PQBP1 (polyglutamine binding protein 1) - Rat Genome Database

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Gene: PQBP1 (polyglutamine binding protein 1) Pan paniscus
Analyze
Symbol: PQBP1
Name: polyglutamine binding protein 1
RGD ID: 11675226
Description: ENCODES a protein that exhibits GTPase binding (ortholog); INVOLVED IN positive regulation of non-motile cilium assembly (ortholog); regulation of dendrite morphogenesis (ortholog); regulation of RNA splicing (ortholog); ASSOCIATED WITH atrial heart septal defect (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN centrosome (ortholog); ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polyglutamine-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,379,690 - 50,392,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,383,075 - 50,395,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,188,244 - 41,200,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,046,351 - 49,058,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,053,030 - 49,058,585 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
PQBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X50,379,690 - 50,392,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X50,383,075 - 50,395,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X41,188,244 - 41,200,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,046,351 - 49,058,587 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,053,030 - 49,058,585 (+)Ensemblpanpan1.1panPan2
PQBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X48,897,930 - 48,903,143 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX48,890,197 - 48,903,402 (+)EnsemblGRCh38hg38GRCh38
GRCh37X48,755,213 - 48,760,420 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X48,640,139 - 48,645,364 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX52,903,108 - 52,908,335 (-)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX46,411,224 - 46,416,455 (+)NCBIHuRef
CHM1_1X48,786,337 - 48,791,564 (+)NCBICHM1_1
T2T-CHM13v2.0X48,308,411 - 48,313,619 (+)NCBIT2T-CHM13v2.0
Pqbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,760,759 - 7,765,469 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,760,758 - 7,765,508 (-)EnsemblGRCm39 Ensembl
GRCm38X7,894,519 - 7,899,269 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,894,519 - 7,899,269 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X7,471,649 - 7,476,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X4,142,378 - 4,147,084 (-)NCBIMGSCv36mm8
MGSCv36X7,051,482 - 7,056,187 (-)NCBIMGSCv36mm8
CeleraX3,570,308 - 3,575,379 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.56NCBI
Pqbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,275,445 - 17,280,018 (+)NCBIGRCr8
mRatBN7.2X14,603,516 - 14,608,091 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX14,603,539 - 14,608,087 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,417,449 - 19,421,632 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,661,479 - 20,665,662 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,926,649 - 16,930,832 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,448,570 - 15,453,130 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,348,138 - 15,453,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,229,838 - 16,234,365 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X26,638,460 - 26,642,640 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX14,688,668 - 14,692,848 (+)NCBICelera
Cytogenetic MapXq12NCBI
Pqbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955543430,853 - 434,205 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955543430,324 - 434,205 (+)NCBIChiLan1.0ChiLan1.0
PQBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,056,660 - 42,060,508 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX42,056,708 - 42,121,818 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX16,432,105 - 16,435,949 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,192,893 - 42,196,738 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX42,192,898 - 42,196,731 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X42,179,100 - 42,182,944 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,167,381 - 42,171,226 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,261,589 - 42,265,433 (+)NCBIUU_Cfam_GSD_1.0
Pqbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X34,585,253 - 34,589,621 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936721825,075 - 832,755 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936721825,171 - 830,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PQBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX42,975,413 - 42,981,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X42,976,086 - 42,981,732 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X47,831,705 - 47,837,374 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PQBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,014,664 - 46,020,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX46,015,250 - 46,023,988 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607611,499,628 - 11,505,316 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pqbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624893681,167 - 684,251 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624893680,929 - 684,251 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034949786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034949791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055106170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063601539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide DQ977309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000054722   ⟹   ENSPPAP00000031857
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,053,030 - 49,058,585 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054738   ⟹   ENSPPAP00000031873
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,054,147 - 49,058,526 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054741   ⟹   ENSPPAP00000031876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX49,054,147 - 49,058,526 (+)Ensembl
RefSeq Acc Id: XM_055106164   ⟹   XP_054962139
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,379,719 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,383,093 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106165   ⟹   XP_054962140
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,379,703 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,383,075 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106166   ⟹   XP_054962141
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,387,068 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,390,441 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106167   ⟹   XP_054962142
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,387,084 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,390,463 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106168   ⟹   XP_054962143
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,387,353 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,390,726 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106169   ⟹   XP_054962144
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,387,374 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,390,764 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_055106170   ⟹   XP_054962145
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,387,372 - 50,392,268 (+)NCBI
NHGRI_mPanPan1X50,390,766 - 50,395,640 (+)NCBI
RefSeq Acc Id: XM_063601539   ⟹   XP_063457609
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X50,379,690 - 50,392,268 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSPPAP00000031857   ⟸   ENSPPAT00000054722
RefSeq Acc Id: ENSPPAP00000031876   ⟸   ENSPPAT00000054741
RefSeq Acc Id: ENSPPAP00000031873   ⟸   ENSPPAT00000054738
RefSeq Acc Id: XP_054962140   ⟸   XM_055106165
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054962139   ⟸   XM_055106164
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054962141   ⟸   XM_055106166
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BQC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054962142   ⟸   XM_055106167
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BQC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054962143   ⟸   XM_055106168
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BQC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054962145   ⟸   XM_055106170
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BQC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054962144   ⟸   XM_055106169
- Peptide Label: isoform X3
- UniProtKB: A0A2R9BQC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063457609   ⟸   XM_063601539
- Peptide Label: isoform X4
Protein Domains
WW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038832 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054722.1 UniProtKB/TrEMBL
  ENSPPAT00000054738.1 UniProtKB/TrEMBL
  ENSPPAT00000054741.1 UniProtKB/TrEMBL
Gene3D-CATH 2.20.70.10 UniProtKB/TrEMBL
  Glutaredoxin UniProtKB/TrEMBL
InterPro WW_dom UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/TrEMBL
NCBI Gene PQBP1 ENTREZGENE
PANTHER 12 KDA HEAT SHOCK PROTEIN UniProtKB/TrEMBL
  12 KDA HEAT SHOCK PROTEIN UniProtKB/TrEMBL
PROSITE WW_DOMAIN_2 UniProtKB/TrEMBL
SMART SM00456 UniProtKB/TrEMBL
Superfamily-SCOP SSF51045 UniProtKB/TrEMBL
UniProt A0A2R9BQC2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BQD1_PANPA UniProtKB/TrEMBL
  A0A2R9BZD8_PANPA UniProtKB/TrEMBL