UBE2D2 (ubiquitin conjugating enzyme E2 D2) - Rat Genome Database

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Gene: UBE2D2 (ubiquitin conjugating enzyme E2 D2) Pan paniscus
Analyze
Symbol: UBE2D2
Name: ubiquitin conjugating enzyme E2 D2
RGD ID: 11671815
Description: ENCODES a protein that exhibits ATP binding (inferred); transferase activity (inferred); ubiquitin conjugating enzyme activity (inferred); INVOLVED IN protein autoubiquitination (inferred); protein K48-linked ubiquitination (inferred); protein modification by small protein conjugation (inferred); PARTICIPATES IN ubiquitin/proteasome degradation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN nucleus (inferred); protein-containing complex (inferred); ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-conjugating enzyme E2 D2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,821,488 - 134,889,981 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,961,832 - 133,030,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,927,150 - 134,995,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,048,385 - 141,115,842 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,048,385 - 141,115,842 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
UBE2D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,821,488 - 134,889,981 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,961,832 - 133,030,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,927,150 - 134,995,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,048,385 - 141,115,842 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,048,385 - 141,115,842 (+)Ensemblpanpan1.1panPan2
UBE2D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,526,240 - 139,628,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,526,431 - 139,628,434 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,940,924 - 139,008,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,920,935 - 138,988,203 (+)NCBINCBI36Build 36hg18NCBI36
Build 345138,920,934 - 138,988,200NCBI
Celera5135,015,760 - 135,083,018 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5134,083,642 - 134,151,382 (+)NCBIHuRef
CHM1_15138,373,349 - 138,440,624 (+)NCBICHM1_1
T2T-CHM13v2.05140,086,420 - 140,153,498 (+)NCBIT2T-CHM13v2.0
Ube2d2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,904,612 - 35,940,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,904,611 - 35,942,547 (+)EnsemblGRCm39 Ensembl
GRCm381835,771,559 - 35,807,172 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,771,558 - 35,809,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv371835,931,213 - 35,966,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,897,581 - 35,933,137 (+)NCBIMGSCv36mm8
Celera1836,227,229 - 36,263,010 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.24NCBI
Ube2d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,638,399 - 27,680,386 (+)NCBIGRCr8
mRatBN7.21827,364,325 - 27,406,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1827,364,303 - 27,406,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1827,491,743 - 27,533,729 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,253,786 - 28,295,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,588,662 - 27,630,661 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,561,957 - 28,603,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,594,892 - 28,603,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01828,273,644 - 28,315,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41828,426,503 - 28,434,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1827,096,239 - 27,136,838 (+)NCBICelera
Cytogenetic Map18p11NCBI
Ube2d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418989,802 - 1,006,262 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418990,124 - 1,043,544 (-)NCBIChiLan1.0ChiLan1.0
UBE2D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,827,994 - 34,884,047 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,827,888 - 34,897,412 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,929,861 - 31,985,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0235,281,731 - 35,338,066 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl235,281,967 - 35,338,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,334,131 - 32,390,460 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,200,956 - 33,257,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,952,551 - 34,008,349 (+)NCBIUU_Cfam_GSD_1.0
Ube2d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,925,200 - 152,993,263 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365318,630,516 - 8,684,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365318,668,954 - 8,686,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2141,398,065 - 141,459,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12141,397,937 - 141,459,821 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22147,425,441 - 147,445,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12342,219,650 - 42,280,931 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2342,220,683 - 42,279,298 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603435,605,912 - 35,667,810 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474332,338,821 - 32,425,478 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474332,338,864 - 32,426,220 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003829199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000059244   ⟹   ENSPPAP00000036352
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5141,048,385 - 141,115,842 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000059251   ⟹   ENSPPAP00000036359
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl5141,087,047 - 141,114,209 (+)Ensembl
RefSeq Acc Id: XM_003829199   ⟹   XP_003829247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v24134,821,488 - 134,889,981 (+)NCBI
NHGRI_mPanPan15132,961,832 - 133,030,281 (+)NCBI
Mhudiblu_PPA_v05134,927,150 - 134,995,298 (+)NCBI
PanPan1.15141,048,385 - 141,115,842 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003829247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000036352
  ENSPPAP00000036352.1
  ENSPPAP00000036359.1
Reference Protein Sequences
RefSeq Acc Id: XP_003829247   ⟸   XM_003829199
- UniProtKB: A0A2R9CDE7 (UniProtKB/TrEMBL),   A0A2R9C3M3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000036352   ⟸   ENSPPAT00000059244
RefSeq Acc Id: ENSPPAP00000036359   ⟸   ENSPPAT00000059251
Protein Domains
UBC core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000040948 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000059244.1 UniProtKB/TrEMBL
  ENSPPAT00000059251.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
KEGG Report pps:100981165 UniProtKB/TrEMBL
NCBI Gene UBE2D2 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/TrEMBL
  UBIQUITIN-CONJUGATING ENZYME E2 D2 UniProtKB/TrEMBL
Pfam UQ_con UniProtKB/TrEMBL
PROSITE UBC_1 UniProtKB/TrEMBL
  UBC_2 UniProtKB/TrEMBL
SMART UBCc UniProtKB/TrEMBL
Superfamily-SCOP SSF54495 UniProtKB/TrEMBL
UniProt A0A2R9C3M3 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CDE7 ENTREZGENE, UniProtKB/TrEMBL