FAM227A (family with sequence similarity 227 member A) - Rat Genome Database

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Gene: FAM227A (family with sequence similarity 227 member A) Pan paniscus
Analyze
Symbol: FAM227A
Name: family with sequence similarity 227 member A
RGD ID: 11670686
Description: ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,433,878 - 48,512,226 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,125,331 - 51,203,654 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,500,521 - 19,571,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,320,378 - 37,389,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,317,585 - 37,383,992 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
FAM227A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22348,433,878 - 48,512,226 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12251,125,331 - 51,203,654 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02219,500,521 - 19,571,585 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12237,320,378 - 37,389,608 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2237,317,585 - 37,383,992 (-)Ensemblpanpan1.1panPan2
FAM227A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,578,118 - 38,656,392 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,578,118 - 38,656,629 (-)EnsemblGRCh38hg38GRCh38
GRCh372238,974,123 - 39,052,397 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362237,317,308 - 37,382,580 (-)NCBINCBI36Build 36hg18NCBI36
Celera2222,779,707 - 22,859,306 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2221,939,924 - 22,018,721 (-)NCBIHuRef
CHM1_12238,932,948 - 39,011,511 (-)NCBICHM1_1
T2T-CHM13v2.02239,042,376 - 39,126,576 (-)NCBIT2T-CHM13v2.0
Fam227a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391579,493,777 - 79,543,157 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1579,496,518 - 79,543,157 (-)EnsemblGRCm39 Ensembl
GRCm381579,609,576 - 79,658,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1579,609,576 - 79,658,956 (-)EnsemblGRCm38mm10GRCm38
MGSCv371579,440,006 - 79,489,386 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361579,439,572 - 79,486,211 (-)NCBIMGSCv36mm8
Celera1581,735,209 - 81,784,370 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.81NCBI
Fam227a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,054,751 - 113,096,898 (-)NCBIGRCr8
mRatBN7.27111,174,362 - 111,216,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,174,362 - 111,216,483 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7112,921,984 - 112,964,201 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,145,524 - 115,187,743 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,114,896 - 115,157,117 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07120,846,166 - 120,891,738 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7120,846,330 - 120,882,392 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07120,839,737 - 120,881,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47117,441,099 - 117,469,873 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17117,479,895 - 117,503,230 (+)NCBI
Celera7107,505,726 - 107,546,948 (-)NCBICelera
Cytogenetic Map7q34NCBI
Fam227a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541324,732,478 - 24,780,909 (-)NCBIChiLan1.0ChiLan1.0
FAM227A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11026,134,876 - 26,228,245 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1026,139,315 - 26,213,928 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1026,090,234 - 26,186,148 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01026,925,832 - 27,021,399 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1026,930,454 - 27,005,601 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11026,647,487 - 26,742,995 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,958,611 - 27,054,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01027,135,506 - 27,231,125 (+)NCBIUU_Cfam_GSD_1.0
Fam227a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,676,099 - 9,729,839 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364922,690,575 - 2,731,287 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM227A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.159,358,405 - 9,419,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,601,911 - 6,697,380 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM227A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11921,246,949 - 21,318,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1921,242,243 - 21,317,748 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045104,442,238 - 104,517,900 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam227a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247529,485,218 - 9,535,562 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000028780   ⟹   ENSPPAP00000006920
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2237,317,585 - 37,383,992 (-)Ensembl
RefSeq Acc Id: XM_034949048   ⟹   XP_034804939
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,433,878 - 48,512,226 (-)NCBI
NHGRI_mPanPan12251,125,331 - 51,203,654 (-)NCBI
Mhudiblu_PPA_v02219,500,521 - 19,571,585 (-)NCBI
RefSeq Acc Id: XM_055105718   ⟹   XP_054961693
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22348,433,878 - 48,494,749 (-)NCBI
NHGRI_mPanPan12251,125,331 - 51,186,154 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034804939 (Get FASTA)   NCBI Sequence Viewer  
  XP_054961693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006920.1
Reference Protein Sequences
RefSeq Acc Id: XP_034804939   ⟸   XM_034949048
- Peptide Label: isoform X1
- UniProtKB: A0A2R8ZPQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000006920   ⟸   ENSPPAT00000028780
RefSeq Acc Id: XP_054961693   ⟸   XM_055105718
- Peptide Label: isoform X2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000025902 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000028780.1 UniProtKB/TrEMBL
InterPro FAM227 UniProtKB/TrEMBL
NCBI Gene FAM227A ENTREZGENE
PANTHER PROTEIN FAM227A UniProtKB/TrEMBL
  PTHR33560 UniProtKB/TrEMBL
Pfam FWWh UniProtKB/TrEMBL
UniProt A0A2R8ZPQ0 ENTREZGENE, UniProtKB/TrEMBL