LOC108349071 (40S ribosomal protein S27-like) - Rat Genome Database

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Gene: LOC108349071 (40S ribosomal protein S27-like) Rattus norvegicus
Analyze
Symbol: LOC108349071
Name: 40S ribosomal protein S27-like
RGD ID: 11496872
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small ribosomal subunit protein eS27-like
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,104,934 - 27,158,377 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2125,336,494 - 25,337,281 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0127,613,313 - 27,613,710 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera124,034,189 - 24,034,586 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse:




References

Genomics

Variants

.
Variants in LOC108349071
332 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
6 4 8 104 1665 71 46 5 8 18 8 5 238 138 41 1695 3 84 151 42 42 42

Sequence


RefSeq Acc Id: XM_063276520   ⟹   XP_063132590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,104,934 - 27,158,377 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063132590 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063132590   ⟸   XM_063276520


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-61993 BioCyc
NCBI Gene LOC108349071 ENTREZGENE
PhenoGen LOC108349071 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108349071  40S ribosomal protein S27-like      Symbol and Name status set to provisional 70820 PROVISIONAL