Fam180b (family with sequence similarity 180 member B) - Rat Genome Database

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Gene: Fam180b (family with sequence similarity 180 member B) Rattus norvegicus
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Symbol: Fam180b
Name: family with sequence similarity 180 member B
RGD ID: 11469551
Description: Orthologous to human FAM180B (family with sequence similarity 180 member B); INTERACTS WITH aristolochic acid A (ortholog); benzo[a]pyrene (ortholog); valproic acid (ortholog).
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,329,796 - 97,330,637 (-)NCBIGRCr8
Rnor_6.0379,718,116 - 79,721,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera376,082,097 - 76,085,025 (-)NCBICelera
Cytogenetic Map3q24NCBI


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Fam180b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,329,796 - 97,330,637 (-)NCBIGRCr8
Rnor_6.0379,718,116 - 79,721,044 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera376,082,097 - 76,085,025 (-)NCBICelera
Cytogenetic Map3q24NCBI
FAM180B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,586,651 - 47,589,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,586,678 - 47,589,194 (+)EnsemblGRCh38hg38GRCh38
GRCh371147,608,203 - 47,610,746 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,564,774 - 47,567,322 (+)NCBINCBI36Build 36hg18NCBI36
Celera1147,750,958 - 47,753,509 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,309,316 - 47,311,836 (+)NCBIHuRef
CHM1_11147,607,471 - 47,609,987 (+)NCBICHM1_1
T2T-CHM13v2.01147,747,055 - 47,749,590 (+)NCBIT2T-CHM13v2.0
Gm32514
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,720,968 - 90,724,283 (-)NCBIGRCm39GRCm39mm39
GRCm38290,890,624 - 90,893,939 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera292,276,637 - 92,278,607 (-)NCBICelera
Cytogenetic Map2E1NCBI
Fam180b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955422709,915 - 713,027 (-)NCBIChiLan1.0ChiLan1.0
FAM180B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,789,095 - 49,793,521 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,808,839 - 49,813,588 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,535,603 - 47,538,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,086,055 - 48,088,538 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,086,017 - 48,088,511 (+)Ensemblpanpan1.1panPan2
FAM180B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11842,065,888 - 42,068,258 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1842,066,604 - 42,068,382 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1840,796,768 - 40,800,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01842,721,307 - 42,725,163 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,722,469 - 42,724,245 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,208,543 - 42,212,400 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,762,858 - 41,766,716 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,492,903 - 42,496,760 (-)NCBIUU_Cfam_GSD_1.0
Fam180b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,552,707 - 19,554,762 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,664,168 - 1,666,101 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,664,341 - 1,666,465 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM180B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl215,027,362 - 15,029,982 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1215,027,360 - 15,029,999 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,203,906 - 16,206,545 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM180B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,730,649 - 17,734,817 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,731,364 - 17,733,574 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038115,022,777 - 115,026,258 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam180b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247671,235,434 - 1,239,032 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063285204   ⟹   XP_063141274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,329,796 - 97,330,637 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063141274 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063141274   ⟸   XM_063285204


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11469551 AgrOrtholog
NCBI Gene Fam180b ENTREZGENE
PhenoGen Fam180b PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 Fam180b  family with sequence similarity 180 member B      Symbol and Name status set to provisional 70820 PROVISIONAL