Tmem167b-ps1 (transmembrane protein 167B, pseudogene 1) - Rat Genome Database

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Gene: Tmem167b-ps1 (transmembrane protein 167B, pseudogene 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tmem167b-ps1 (Ensembl: LOC108349010)
Name: transmembrane protein 167B, pseudogene 1 (Ensembl:protein kish-B)
RGD ID: 11454336
Description: Orthologous to human TMEM167B (transmembrane protein 167B).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC108349010; protein kish-B
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Tmem167b  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,050,042 - 25,050,596 (+)NCBIGRCr8
mRatBN7.22025,051,380 - 25,051,934 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,051,477 - 25,051,701 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_WKY_Bbb_1.02025,683,827 - 25,684,381 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02026,534,434 - 26,537,164 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2026,534,535 - 26,534,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2211,348,762 - 211,352,540 (-)EnsemblRnor6.0rn6Rnor6.0
Celera2026,353,266 - 26,355,996 (+)NCBICelera
Cytogenetic Map20p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600382Edcs3Endometrial carcinoma susceptibility QTL33.50.003uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)20125159026Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127339237Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129191651Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129191651Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129191651Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129191651Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129191651Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578807Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600972Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600972Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20289259726381954Rat
4889870Pur30Proteinuria QTL 30190.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20804241029322208Rat
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low 1 1 2 3 2 2 1
Below cutoff 1 2 2 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000000423   ⟹   ENSRNOP00000066928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2025,051,477 - 25,051,701 (+)Ensembl
Rnor_6.0 Ensembl2026,534,535 - 26,534,759 (+)Ensembl
RefSeq Acc Id: XM_017601854   ⟹   XP_017457343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22025,051,399 - 25,054,106 (+)NCBI
Rnor_6.02026,534,434 - 26,537,164 (+)NCBI
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSX4-F1-model_v2 AlphaFold D3ZSX4 1-74 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701568
Promoter ID:EPDNEW_R12089
Type:multiple initiation site
Name:LOC108349010_1
Description:protein kish-B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02026,534,477 - 26,534,537EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11454336 AgrOrtholog
BioCyc Gene G2FUF-3825 BioCyc
Ensembl Genes ENSRNOG00000000376 Ensembl
  ENSRNOG00000042160 Ensembl
NCBI Gene LOC108349010 ENTREZGENE
PhenoGen Tmem167b-ps1 PhenoGen
RatGTEx ENSRNOG00000000376 RatGTEx
  ENSRNOG00000042160 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Tmem167b-ps1  transmembrane protein 167B, pseudogene 1  LOC108349010  protein kish-B  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108349010  protein kish-B      Symbol and Name status set to provisional 70820 PROVISIONAL