Trav34l (T cell receptor alpha variable 34 like)

Gene: Trav34l (T cell receptor alpha variable 34 like) Rattus norvegicus

Analyze

Symbol:

Trav34l (Ensembl: LOC108353026)

Name:

T cell receptor alpha variable 34 like (Ensembl:uncharacterized LOC108353026)

RGD ID:

11454121

Description:

Predicted to be located in membrane.

Type:

gene (Ensembl: protein-coding)

RefSeq Status:

MODEL

Previously known as:

ENSRNOG00000068621; LOC108353026; uncharacterized LOC108353026

RGD Orthologs

Human

Mouse

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	31,297,513 - 31,299,617 (+)	NCBI		GRCr8
mRatBN7.2	15	27,327,456 - 27,329,554 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	27,327,462 - 27,328,325 (+)	NCBI		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	15	27,327,462 - 27,328,325 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	32,515,873 - 32,517,280 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	15	26,910,427 - 26,911,834 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

Trav34l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	31,297,513 - 31,299,617 (+)	NCBI		GRCr8
mRatBN7.2	15	27,327,456 - 27,329,554 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	27,327,462 - 27,328,325 (+)	NCBI		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	15	27,327,462 - 27,328,325 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	32,515,873 - 32,517,280 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	15	26,910,427 - 26,911,834 (+)	NCBI		Celera
Cytogenetic Map	15	p13	NCBI

TRAV34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	22,207,534 - 22,208,129 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	22,207,522 - 22,208,129 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	22,675,430 - 22,676,025 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	21,745,270 - 21,745,865 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	14	2,538,968 - 2,539,563 (+)	NCBI		Celera
Cytogenetic Map	14	q11.2	NCBI
HuRef	14	2,793,055 - 2,793,650 (+)	NCBI		HuRef
CHM1_1	14	22,675,436 - 22,676,031 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	16,405,299 - 16,405,894 (+)	NCBI		T2T-CHM13v2.0

Trdv1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	54,119,069 - 54,119,674 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	54,119,069 - 54,119,674 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	53,881,612 - 53,882,217 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	53,881,612 - 53,882,217 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	54,501,287 - 54,501,892 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Cytogenetic Map	14	C2	NCBI
cM Map	14	27.55	NCBI

Variants

Variants in Trav34l
13 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
5685002	Bss103	Bone structure and strength QTL 103	2.8		tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	15	14481165	28469888	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001841511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001846266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000103116 ⟹ ENSRNOP00000080146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	27,327,462 - 27,328,325 (+)	Ensembl

RefSeq Acc Id:

XR_001841511

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	32,515,873 - 32,517,280 (+)	NCBI

Sequence:

show sequence

TTGAGTATCCAAGCCTCCCAGCCCAGCTACGCAGGCACTTACCTCTGTGCAGGGAGCGCACAGT
GGTCTATAGACTGCCGCGGGCTGTCTCCAAACCTGCAGCTGGGCCACAGCTGCTCTGACACAGG
GCCCCTGAGGCAGGACTAGAGCACTTGCCAAAATGAGAGACTCGAGGGTGCAGTTGTCTCCCTA
CATAGCAGTATAAAGCTTTGAGGAAGGGGACAAGGGACAGGACCCATCCTTGGCAGCCACTTTC
CTTAAGGTGCTGATACCTGTTACCCCATGGTATAAATGTGCATCCCTTCTACTTGTCCTTGGAG
ACCTTGAGCAGCTCCAAGGCATACAAAGTGCATACATCTAGAATCACACAACGGAGCCTCTGCT
TGCGGACTTTCTCCATCACTTTGTGACCACTATCAAGGCGCTGGGGCAGCACAAGGCAATGGCT
ACTCTTCTTTGATGGCAGCAGAGGCAGGAAGGACCTAAAAATAATATTTACACCGTTAATAAAA
TGGCAGTCTCAAATTGA

hide sequence

RefSeq Acc Id:

XR_001846266

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	15	26,910,427 - 26,911,834 (+)	NCBI

Sequence:

show sequence

TTGAGTATCCAAGCCTCCCAGCCCAGCTACGCAGGCACTTACCTCTGTGCAGGGAGCGCACAGT
GGTCTATAGACTGCCGCGGGCTGTCTCCAAACCTGCAGCTGGGCCACAGCTGCTCTGACACAGG
GCCCCTGAGGCAGGACTAGAGCACTTGCCAAAATGAGAGACTCGAGGGTGCAGTTGTCTCCCTA
CATAGCAGTATAAAGCTTTGAGGAAGGGGACAAGGGACAGGACCCATCCTTGGCAGCCACTTTC
CTTAAGGTGCTGATACCTGTTACCCCATGGTATAAATGTGCATCCCTTCTACTTGTCCTTGGAG
ACCTTGAGCAGCTCCAAGGCATACAAAGTGCATACATCTAGAATCACACAACGGAGCCTCTGCT
TGCGGACTTTCTCCATCACTTTGTGACCACTATCAAGGCGCTGGGGCAGCACAAGGCAATGGCT
ACTCTTCTTTGATGGCAGCAGAGGCAGGAAGGACCTAAAAATAATATTTACACCGTTAATAAAA
TGGCAGTCTCAAATTGA

hide sequence

Protein Sequences


Ensembl Protein	ENSRNOP00000080146.1

RefSeq Acc Id:

ENSRNOP00000080146 ⟸ ENSRNOT00000103116

Protein Domains

Ig-like

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-13828	BioCyc
Ensembl Genes	ENSRNOG00000068621	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000103116.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
NCBI Gene	LOC108353026	ENTREZGENE
PANTHER	T CELL RECEPTOR ALPHA VARIABLE 13N-4	UniProtKB/TrEMBL
	T CELL RECEPTOR ALPHA VARIABLE 39	UniProtKB/TrEMBL
Pfam	V-set	UniProtKB/TrEMBL
PhenoGen	Trav34l	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000068621	RatGTEx
RNAcentral	URS0000CCF089	RNACentral
SMART	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8I6G465_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	Trav34l	T cell receptor alpha variable 34 like	LOC108353026	uncharacterized LOC108353026	Symbol and Name Changed	1299863	APPROVED
2022-06-02	LOC108353026	uncharacterized LOC108353026	ENSRNOG00000068621		Data merged from RGD:150343895	737654	PROVISIONAL
2021-08-31	ENSRNOG00000068621				Symbol and Name status set to provisional	45752	PROVISIONAL
2016-08-02	LOC108353026	uncharacterized LOC108353026			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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