LOC108353077 (ral guanine nucleotide dissociation stimulator-like) - Rat Genome Database

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Gene: LOC108353077 (ral guanine nucleotide dissociation stimulator-like) Rattus norvegicus
Analyze
Symbol: LOC108353077 (Ensembl: LOC100363883)
Name: ral guanine nucleotide dissociation stimulator-like (Ensembl:hypothetical LOC100363883)
RGD ID: 11448581
Description: Predicted to enable guanyl-nucleotide exchange factor activity.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81611,128,927 - 11,131,518 (-)NCBIGRCr8
mRatBN7.21611,121,513 - 11,128,582 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1611,122,718 - 11,158,623 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01612,509,889 - 12,513,017 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map16p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Variants

.
Variants in LOC108353077
86 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017600324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072045   ⟹   ENSRNOP00000067521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1611,122,718 - 11,125,181 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106098   ⟹   ENSRNOP00000084126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1611,122,877 - 11,125,181 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118287   ⟹   ENSRNOP00000094680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1611,122,877 - 11,158,623 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119610   ⟹   ENSRNOP00000090903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1611,156,464 - 11,158,623 (-)Ensembl
RefSeq Acc Id: XM_017600324   ⟹   XP_017455813
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81611,128,927 - 11,131,518 (-)NCBI
mRatBN7.21611,121,513 - 11,128,582 (-)NCBI
Rnor_6.01612,509,889 - 12,513,017 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017455813 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067521.2
  ENSRNOP00000084126
  ENSRNOP00000084126.1
  ENSRNOP00000094680.1
Reference Protein Sequences
RefSeq Acc Id: XP_017455813   ⟸   XM_017600324
- UniProtKB: A0A8I5ZX52 (UniProtKB/TrEMBL),   A0A8I6AS40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000094680   ⟸   ENSRNOT00000118287
RefSeq Acc Id: ENSRNOP00000084126   ⟸   ENSRNOT00000106098
RefSeq Acc Id: ENSRNOP00000067521   ⟸   ENSRNOT00000072045
RefSeq Acc Id: ENSRNOP00000090903   ⟸   ENSRNOT00000119610
Protein Domains
N-terminal Ras-GEF

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12041 BioCyc
Ensembl Genes ENSRNOG00000069329 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072045.3 UniProtKB/TrEMBL
  ENSRNOT00000106098.1 UniProtKB/TrEMBL
  ENSRNOT00000118287.1 UniProtKB/TrEMBL
Gene3D-CATH Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_GEF_dom_sf UniProtKB/TrEMBL
KEGG Report rno:108353077 UniProtKB/TrEMBL
NCBI Gene LOC108353077 ENTREZGENE
PANTHER 1700018F24RIK PROTEIN-RELATED UniProtKB/TrEMBL
  1700018F24RIK PROTEIN-RELATED-RELATED UniProtKB/TrEMBL
PhenoGen LOC108353077 PhenoGen
PROSITE RASGEF_NTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000069329 RatGTEx
Superfamily-SCOP SSF48366 UniProtKB/TrEMBL
UniProt A0A8I5ZX52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AS40 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPG3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108353077  ral guanine nucleotide dissociation stimulator-like      Symbol and Name status set to provisional 70820 PROVISIONAL