Spetex2el2 (Spetex-2E protein like 2) - Rat Genome Database

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Gene: Spetex2el2 (Spetex-2E protein like 2) Rattus norvegicus
Analyze
Symbol: Spetex2el2 (Ensembl: LOC108351878)
Name: Spetex-2E protein like 2 (Ensembl:uncharacterized LOC108351878)
RGD ID: 11447770
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC108351878; uncharacterized LOC108351878; uncharacterized protein LOC108351878; uncharacterized protein Spetex2el2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,822,416 - 2,832,863 (+)NCBIGRCr8
mRatBN7.292,925,303 - 2,935,352 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,926,288 - 2,935,264 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.098,642,064 - 8,829,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Spetex2el2
101 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000083795   ⟹   ENSRNOP00000079556
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,926,288 - 2,935,264 (-)Ensembl
RefSeq Acc Id: XM_039084382   ⟹   XP_038940310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,822,416 - 2,832,863 (+)NCBI
mRatBN7.292,925,303 - 2,935,339 (-)NCBI
RefSeq Acc Id: XM_039084383   ⟹   XP_038940311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,822,418 - 2,832,243 (+)NCBI
mRatBN7.292,926,018 - 2,935,333 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940310 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940311 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071005.2
  ENSRNOP00000079556
  ENSRNOP00000079556.1
Reference Protein Sequences
RefSeq Acc Id: XP_038940310   ⟸   XM_039084382
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JZD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940311   ⟸   XM_039084383
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZNT9 (UniProtKB/TrEMBL),   A0A0G2JZD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000079556   ⟸   ENSRNOT00000083795
Protein Domains
Disks large homolog 5 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28456 BioCyc
Ensembl Genes ENSRNOG00000049503 UniProtKB/TrEMBL
  ENSRNOG00000062425 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083795.2 UniProtKB/TrEMBL
  ENSRNOT00000089904.2 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene LOC108351878 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Spetex2el2 PhenoGen
RatGTEx ENSRNOG00000047581 RatGTEx
  ENSRNOG00000062425 RatGTEx
UniProt A0A0G2JZD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNT9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-16 Spetex2el2  Spetex-2E protein like 2  Spetex2el1  Spetex-2E protein like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Spetex2el1  Spetex-2E protein like 1  LOC108351878  uncharacterized LOC108351878  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108351878  uncharacterized LOC108351878      Symbol and Name status set to provisional 70820 PROVISIONAL