LOC108352824 (SMR1 protein-like) - Rat Genome Database

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Gene: LOC108352824 (SMR1 protein-like) Rattus norvegicus
Analyze
Symbol: LOC108352824
Name: SMR1 protein-like
RGD ID: 11434380
Description: Predicted to be located in extracellular region.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: SMR1-alpha3; VCS-alpha3
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81420,176,794 - 20,185,077 (-)NCBIGRCr8
mRatBN7.21419,900,808 - 19,909,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,901,538 - 19,905,940 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01421,607,919 - 21,612,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1419,232,688 - 19,237,153 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC108352824
122 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: NM_001409039   ⟹   NP_001395968
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81420,176,794 - 20,185,077 (-)NCBI
mRatBN7.21419,900,808 - 19,909,091 (-)NCBI
RefSeq Acc Id: XM_063272801   ⟹   XP_063128871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81420,176,794 - 20,181,939 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395968 (Get FASTA)   NCBI Sequence Viewer  
  XP_063128871 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA54833 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000091628
  ENSRNOP00000091628.1
Reference Protein Sequences
RefSeq Acc Id: NP_001395968   ⟸   NM_001409039
- Peptide Label: precursor
- UniProtKB: A0A8I6AT01 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128871   ⟸   XM_063272801
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AT01 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-16149 BioCyc
Ensembl Genes ENSRNOG00000065981 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000119320 ENTREZGENE
  ENSRNOT00000119320.1 UniProtKB/TrEMBL
InterPro SMR-like UniProtKB/TrEMBL
NCBI Gene LOC108352824 ENTREZGENE
PANTHER PTHR14179 UniProtKB/TrEMBL
  SUBMAXILLARY GLAND ANDROGEN-REGULATED PROTEIN 3B UniProtKB/TrEMBL
Pfam PROL5-SMR UniProtKB/TrEMBL
PhenoGen LOC108352824 PhenoGen
RatGTEx ENSRNOG00000065981 RatGTEx
UniProt A0A8I6AT01 ENTREZGENE, UniProtKB/TrEMBL
  P70634_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108352824  SMR1 protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL