LOC108348751 (uncharacterized LOC108348751) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC108348751 (uncharacterized LOC108348751) Rattus norvegicus
Analyze
Symbol: LOC108348751
Name: uncharacterized LOC108348751
RGD ID: 11431944
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AABR07031278.1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,127,723 - 7,139,750 (-)NCBIGRCr8
mRatBN7.2186,853,237 - 6,865,278 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl186,853,266 - 6,865,230 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0187,118,839 - 7,124,536 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl187,118,285 - 7,118,979 (+)NCBIRnor6.0rn6Rnor6.0
Celera186,876,516 - 6,882,213 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108348751
162 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000081877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,853,266 - 6,865,230 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,853,266 - 6,865,230 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,853,266 - 6,865,230 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000118694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl186,853,266 - 6,859,127 (-)Ensembl
RefSeq Acc Id: XR_001842049
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,127,723 - 7,139,750 (-)NCBI
mRatBN7.2186,853,237 - 6,865,278 (-)NCBI
Rnor_6.0187,118,839 - 7,124,253 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005496363
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,127,723 - 7,139,750 (-)NCBI
mRatBN7.2186,853,241 - 6,865,278 (-)NCBI
RefSeq Acc Id: XR_005496365
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,127,723 - 7,139,750 (-)NCBI
mRatBN7.2186,853,240 - 6,865,278 (-)NCBI
RefSeq Acc Id: XR_005496366
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,127,723 - 7,139,750 (-)NCBI
mRatBN7.2186,853,241 - 6,865,278 (-)NCBI
RefSeq Acc Id: XR_010059636
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,127,723 - 7,139,750 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8272 BioCyc
Ensembl Genes ENSRNOG00000060302 Ensembl, ENTREZGENE
NCBI Gene LOC108348751 ENTREZGENE
PhenoGen LOC108348751 PhenoGen
RatGTEx ENSRNOG00000060302 RatGTEx
RNAcentral URS0000CD01D5 RNACentral
  URS0000CD0543 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC108348751  uncharacterized LOC108348751  AABR07031278.1    Data merged from RGD:15013224 737654 PROVISIONAL
2019-11-08 AABR07031278.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108348751  uncharacterized LOC108348751      Symbol and Name status set to provisional 70820 PROVISIONAL