LOC108352140 (high mobility group protein B4-like) - Rat Genome Database

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Gene: LOC108352140 (high mobility group protein B4-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108352140 (Ensembl: LOC103694587)
Name: high mobility group protein B4-like
RGD ID: 11427469
Description: Predicted to enable DNA binding activity. Predicted to be located in nucleus.
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X135,863,516 - 135,864,214 (+)NCBIGRCr8
mRatBN7.2X130,942,850 - 130,943,537 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX130,942,976 - 130,943,482 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01092,771,319 - 92,772,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in LOC108352140
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017597727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000118192   ⟹   ENSRNOP00000091746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX130,942,976 - 130,943,482 (+)Ensembl
RefSeq Acc Id: XM_017597727   ⟹   XP_017453216
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X135,863,516 - 135,864,214 (+)NCBI
mRatBN7.2X130,942,850 - 130,943,537 (+)NCBI
Rnor_6.01092,771,319 - 92,772,014 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017453216 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086196.1
  ENSRNOP00000087272.1
  ENSRNOP00000091746
  ENSRNOP00000091746.1
Reference Protein Sequences
RefSeq Acc Id: XP_017453216   ⟸   XM_017597727
- UniProtKB: A0A8I6AGB6 (UniProtKB/TrEMBL),   A0A8I6A1Q7 (UniProtKB/TrEMBL),   A0A8I6A6Y4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000091746   ⟸   ENSRNOT00000118192
Protein Domains
HMG box

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1046 BioCyc
Ensembl Genes ENSRNOG00000067113 UniProtKB/TrEMBL
  ENSRNOG00000067186 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000070141 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103726.1 UniProtKB/TrEMBL
  ENSRNOT00000115711.1 UniProtKB/TrEMBL
  ENSRNOT00000118192.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
KEGG Report rno:103694587 UniProtKB/TrEMBL
  rno:108352140 UniProtKB/TrEMBL
NCBI Gene LOC108352140 ENTREZGENE
PANTHER HIGH MOBILITY GROUP PROTEIN B4 UniProtKB/TrEMBL
  HIGH MOBILITY GROUP PROTEIN DSP1 UniProtKB/TrEMBL
Pfam HMG_box UniProtKB/TrEMBL
  HMG_box_2 UniProtKB/TrEMBL
PhenoGen LOC108352140 PhenoGen
PRINTS HIGHMOBLTY12 UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067113 RatGTEx
  ENSRNOG00000067186 RatGTEx
  ENSRNOG00000070141 RatGTEx
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A8I6A1Q7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6Y4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGB6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108352140  high mobility group protein B4-like      Symbol and Name status set to provisional 70820 PROVISIONAL