Rpl23al9 (ribosomal protein L23A like 9) - Rat Genome Database

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Gene: Rpl23al9 (ribosomal protein L23A like 9) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl23al9 (Ensembl: AABR07021384.1)
Name: ribosomal protein L23A like 9
RGD ID: 11419406
Description: Predicted to be involved in translation.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L23a pseudogene; 60S ribosomal protein L23a-like; large ribosomal subunit protein uL23-like; LOC108352551; ribosomal protein L23A like 1; Rpl23al1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81366,444,890 - 66,446,807 (-)NCBIGRCr8
mRatBN7.21363,894,996 - 63,895,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1363,894,996 - 63,895,466 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01369,172,130 - 69,172,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1363,819,013 - 63,819,556 (-)NCBICelera
Cytogenetic Map13q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rpl23al9
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
2303028Bp329Blood pressure QTL 329arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)135849787273485113Rat
724564Uae11Urinary albumin excretion QTL 115.7urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)135949252277046890Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063272742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000049703   ⟹   ENSRNOP00000040232
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1363,894,996 - 63,895,466 (-)Ensembl
Rnor_6.0 Ensembl1369,172,167 - 69,172,643 (-)Ensembl
RefSeq Acc Id: XM_063272742   ⟹   XP_063128812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81366,444,890 - 66,446,807 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063128812 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040232.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000040232   ⟸   ENSRNOT00000049703
RefSeq Acc Id: XP_063128812   ⟸   XM_063272742
- UniProtKB: D4AAL7 (UniProtKB/TrEMBL)
Protein Domains
Large ribosomal subunit protein uL23 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAL7-F1-model_v2 AlphaFold D4AAL7 1-158 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11419406 AgrOrtholog
BioCyc Gene G2FUF-17926 BioCyc
Ensembl Genes ENSRNOG00000029859 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049703.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  Ribosomal_L23 UniProtKB/TrEMBL
  Ribosomal_L23/L15e_core_dom_sf UniProtKB/TrEMBL
  Ribosomal_L23/L25_N UniProtKB/TrEMBL
  Ribosomal_L25/23 UniProtKB/TrEMBL
NCBI Gene LOC108352551 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23A UniProtKB/TrEMBL
  PTHR11620 UniProtKB/TrEMBL
Pfam Ribosomal_L23 UniProtKB/TrEMBL
  Ribosomal_L23eN UniProtKB/TrEMBL
PhenoGen Rpl23al9 PhenoGen
RatGTEx ENSRNOG00000029859 RatGTEx
Superfamily-SCOP SSF54189 UniProtKB/TrEMBL
UniProt D4AAL7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-13 Rpl23al9  ribosomal protein L23A like 9  Rpl23al1  ribosomal protein L23A like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rpl23al1  ribosomal protein L23A like 1  LOC108352551  60S ribosomal protein L23a pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108352551  60S ribosomal protein L23a pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL