LOC108351529 (uncharacterized LOC108351529) - Rat Genome Database

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Gene: LOC108351529 (uncharacterized LOC108351529) Rattus norvegicus
Analyze
Symbol: LOC108351529
Name: uncharacterized LOC108351529
RGD ID: 11416329
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: LOC102552227; uncharacterized LOC102552227
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87124,624,446 - 124,706,050 (-)NCBIGRCr8
mRatBN7.27122,745,859 - 122,826,500 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.07132,829,794 - 132,841,482 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07132,527,655 - 132,531,176 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera7119,236,390 - 119,248,716 (-)NCBICelera
Cytogenetic Map7q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108351529
727 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)790482196135012528Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)791281130135012528Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)791412594129807172Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)796670164135012528Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7102297359133492884Rat
731174Uae23Urinary albumin excretion QTL 232.40.0042urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)7104603555135012528Rat
2306821Bp335Blood pressure QTL 3350.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7106571501135012528Rat
631663Bw6Body weight QTL 63.4body mass (VT:0001259)body weight (CMO:0000012)7111075573134976056Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7111182207135012528Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7112308254133492884Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7112729683133492707Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7116677010124049952Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)7116677189127103496Rat
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7119513385135012528Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001839008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005487301
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,678,355 - 124,705,894 (-)NCBI
mRatBN7.27122,798,802 - 122,826,343 (-)NCBI
RefSeq Acc Id: XR_005487305
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,629,209 - 124,705,895 (-)NCBI
mRatBN7.27122,745,859 - 122,826,344 (-)NCBI
RefSeq Acc Id: XR_005487306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,668,061 - 124,705,894 (-)NCBI
mRatBN7.27122,788,508 - 122,826,343 (-)NCBI
RefSeq Acc Id: XR_010053471
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,678,355 - 124,705,899 (-)NCBI
RefSeq Acc Id: XR_010053472
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,893 (-)NCBI
RefSeq Acc Id: XR_010053473
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,893 (-)NCBI
RefSeq Acc Id: XR_010053474
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,624,446 - 124,705,895 (-)NCBI
RefSeq Acc Id: XR_010053475
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,892 (-)NCBI
RefSeq Acc Id: XR_010053476
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,706,050 (-)NCBI
RefSeq Acc Id: XR_010053477
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,895 (-)NCBI
RefSeq Acc Id: XR_010053478
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,678,355 - 124,705,890 (-)NCBI
RefSeq Acc Id: XR_010053479
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,896 (-)NCBI
RefSeq Acc Id: XR_010053480
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,895 (-)NCBI
RefSeq Acc Id: XR_010053481
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,624,446 - 124,705,890 (-)NCBI
RefSeq Acc Id: XR_010053482
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,896 (-)NCBI
RefSeq Acc Id: XR_010053483
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,896 (-)NCBI
RefSeq Acc Id: XR_010053484
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,897 (-)NCBI
RefSeq Acc Id: XR_010053485
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,896 (-)NCBI
RefSeq Acc Id: XR_010053486
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,897 (-)NCBI
RefSeq Acc Id: XR_010053487
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,897 (-)NCBI
RefSeq Acc Id: XR_010053488
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,898 (-)NCBI
RefSeq Acc Id: XR_010053489
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,899 (-)NCBI
RefSeq Acc Id: XR_010053490
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,899 (-)NCBI
RefSeq Acc Id: XR_010053491
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,899 (-)NCBI
RefSeq Acc Id: XR_010053492
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87124,676,341 - 124,705,899 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-32380 BioCyc
NCBI Gene LOC108351529 ENTREZGENE
PhenoGen LOC108351529 PhenoGen
RNAcentral URS0000CCFD9F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC108351529  uncharacterized LOC108351529  LOC102552227  uncharacterized LOC102552227  Data merged from RGD:7608037 737654 PROVISIONAL
2016-08-02 LOC108351529  uncharacterized LOC108351529      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102552227  uncharacterized LOC102552227      Symbol and Name status set to provisional 70820 PROVISIONAL