LOC108349711 (uncharacterized LOC108349711) - Rat Genome Database

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Gene: LOC108349711 (uncharacterized LOC108349711) Rattus norvegicus
Analyze
Symbol: LOC108349711
Name: uncharacterized LOC108349711
RGD ID: 11403659
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81268,632,551 - 268,640,389 (-)NCBIGRCr8
mRatBN7.21258,646,463 - 258,654,480 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01280,653,842 - 280,661,257 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1254,297,266 - 254,303,068 (-)NCBICelera
Cytogenetic Map1q55NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108349711
70 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
634313Niddm43Non-insulin dependent diabetes mellitus QTL 43blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1199050459259647894Rat
1358890Bp259Blood pressure QTL 2593.06arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1210702053260522016Rat
734768Niddm59Non-insulin dependent diabetes mellitus QTL 59body mass (VT:0001259)body weight (CMO:0000012)1213843987258843987Rat
70211Niddm24Non-insulin dependent diabetes mellitus QTL 243.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1214647894259647894Rat
1549910Bw54Body weight QTL 540.05body mass (VT:0001259)body weight (CMO:0000012)1214647894259647894Rat
61327Eae7Experimental allergic encephalomyelitis QTL 75.6body mass (VT:0001259)change in body weight (CMO:0002045)1216255568260522016Rat
2302040Pia35Pristane induced arthritis QTL 353.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1216255568260522016Rat
731175Uae20Urinary albumin excretion QTL 203.50.0018urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1221264111259647894Rat
10053715Scort24Serum corticosterone level QTL 242.130.0088blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1221414816260522016Rat
724552Glom2Glomerulus QTL 23.30.0001kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)1222363780260522016Rat
1600392Bw123Body weight QTL 1230.001body mass (VT:0001259)body weight (CMO:0000012)1223201027260522016Rat
734767Niddm57Non-insulin dependent diabetes mellitus QTL 57body mass (VT:0001259)body weight (CMO:0000012)1224054293260122809Rat
631843Bw116Body weight QTL 1164.10.016abdominal adipose amount (VT:1000220)abdominal fat pad weight (CMO:0000088)1224054293260122809Rat
734769Niddm58Non-insulin dependent diabetes mellitus QTL 58body mass (VT:0001259)body weight (CMO:0000012)1224569538260122809Rat
631215Stl8Serum triglyceride level QTL 89.270.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1225126575260522016Rat
1300108Rf8Renal function QTL 83.75renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1228581588259647894Rat
1581544Rf52Renal function QTL 520.05urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)1232156370259647894Rat
631536Lnnr2Liver neoplastic nodule remodeling QTL 22.90.0005liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)1233948574260522016Rat
631690Scl5Serum cholesterol level QTL 52.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1236125214260522016Rat
631836Stl31Serum triglyceride level QTL 314.640.00000487blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1237147813260522016Rat
631837Niddm35Non-insulin dependent diabetes mellitus QTL 350.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1238699859259647894Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_001836189
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,634,539 - 268,640,364 (-)NCBI
mRatBN7.21258,647,442 - 258,654,479 (-)NCBI
Rnor_6.01280,655,222 - 280,661,257 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001836190
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,632,551 - 268,640,362 (-)NCBI
mRatBN7.21258,646,466 - 258,654,476 (-)NCBI
Rnor_6.01280,653,842 - 280,661,257 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005499786
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,632,551 - 268,640,388 (-)NCBI
mRatBN7.21258,646,465 - 258,654,479 (-)NCBI
RefSeq Acc Id: XR_005499787
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,632,551 - 268,640,385 (-)NCBI
mRatBN7.21258,646,465 - 258,654,480 (-)NCBI
RefSeq Acc Id: XR_005499789
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,632,551 - 268,640,364 (-)NCBI
mRatBN7.21258,646,463 - 258,654,479 (-)NCBI
RefSeq Acc Id: XR_010063328
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,634,539 - 268,640,389 (-)NCBI
RefSeq Acc Id: XR_010063329
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81268,632,551 - 268,640,377 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-55241 BioCyc
NCBI Gene LOC108349711 ENTREZGENE
PhenoGen LOC108349711 PhenoGen
RNAcentral URS0000CCEEDB RNACentral
  URS0000CCF5ED RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108349711  uncharacterized LOC108349711      Symbol and Name status set to provisional 70820 PROVISIONAL