LOC108352699 (uncharacterized LOC108352699) - Rat Genome Database

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Gene: LOC108352699 (uncharacterized LOC108352699) Rattus norvegicus
Analyze
Symbol: LOC108352699
Name: uncharacterized LOC108352699
RGD ID: 11392357
Description:
Type: ncrna (Ensembl: lincRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,690,648 - 6,738,867 (+)NCBIGRCr8
mRatBN7.2146,386,132 - 6,424,780 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0147,973,142 - 7,998,126 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,973,062 - 7,998,174 (+)EnsemblRnor6.0rn6Rnor6.0
Celera146,529,083 - 6,553,991 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108352699
464 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system appendage
High
Medium
Low 1
Below cutoff 1 1 1 1 31 10 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000084570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl147,973,062 - 7,998,174 (+)Ensembl
RefSeq Acc Id: XR_005493118
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,717 - 6,738,867 (+)NCBI
mRatBN7.2146,386,134 - 6,424,777 (+)NCBI
RefSeq Acc Id: XR_005493120
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,717 - 6,727,209 (+)NCBI
mRatBN7.2146,386,133 - 6,422,605 (+)NCBI
RefSeq Acc Id: XR_005493121
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,717 - 6,738,867 (+)NCBI
mRatBN7.2146,386,134 - 6,424,777 (+)NCBI
RefSeq Acc Id: XR_005493123
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,648 - 6,738,867 (+)NCBI
mRatBN7.2146,386,132 - 6,424,780 (+)NCBI
RefSeq Acc Id: XR_010057432
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,717 - 6,738,867 (+)NCBI
RefSeq Acc Id: XR_010057433
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8146,690,717 - 6,738,867 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-16474 BioCyc
Ensembl Genes ENSRNOG00000061590 Ensembl
NCBI Gene LOC108352699 ENTREZGENE
PhenoGen LOC108352699 PhenoGen
RatGTEx ENSRNOG00000061590 RatGTEx
RNAcentral URS0000CCEB6C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108352699  uncharacterized LOC108352699      Symbol and Name status set to provisional 70820 PROVISIONAL