LOC108350139 (uncharacterized LOC108350139) - Rat Genome Database

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Gene: LOC108350139 (uncharacterized LOC108350139) Rattus norvegicus
Analyze
Symbol: LOC108350139
Name: uncharacterized LOC108350139
RGD ID: 11376688
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82241,950,465 - 242,083,684 (-)NCBIGRCr8
mRatBN7.22239,342,624 - 239,423,222 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.02255,624,550 - 255,672,516 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera2231,306,805 - 231,371,136 (-)NCBICelera
Cytogenetic Map2q45NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108350139
1053 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2229059610249053267Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_001836959
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,018,748 - 242,083,674 (-)NCBI
mRatBN7.22239,358,702 - 239,423,222 (-)NCBI
Rnor_6.02255,624,550 - 255,672,516 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005501401
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,018,751 - 242,083,634 (-)NCBI
mRatBN7.22239,358,705 - 239,423,222 (-)NCBI
RefSeq Acc Id: XR_005501402
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,018,749 - 242,083,665 (-)NCBI
mRatBN7.22239,358,703 - 239,423,222 (-)NCBI
RefSeq Acc Id: XR_005501403
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,014,332 - 242,083,659 (-)NCBI
mRatBN7.22239,342,624 - 239,423,222 (-)NCBI
RefSeq Acc Id: XR_005501404
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,050,074 - 242,083,666 (-)NCBI
mRatBN7.22239,386,281 - 239,423,222 (-)NCBI
RefSeq Acc Id: XR_010064529
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82241,950,465 - 242,083,665 (-)NCBI
RefSeq Acc Id: XR_010064530
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,018,747 - 242,083,681 (-)NCBI
RefSeq Acc Id: XR_010064531
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82242,014,667 - 242,083,684 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50839 BioCyc
NCBI Gene LOC108350139 ENTREZGENE
PhenoGen LOC108350139 PhenoGen
RNAcentral URS0000CCF6FC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108350139  uncharacterized LOC108350139      Symbol and Name status set to provisional 70820 PROVISIONAL