S100b (S100 protein, beta polypeptide, neural) - Rat Genome Database

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Gene: S100b (S100 protein, beta polypeptide, neural) Mus musculus
Analyze
Symbol: S100b
Name: S100 protein, beta polypeptide, neural
RGD ID: 11252
MGI Page MGI
Description: Predicted to enable several functions, including RAGE receptor binding activity; S100 protein binding activity; and metal ion binding activity. Involved in several processes, including adaptive thermogenesis; positive regulation of neuron differentiation; and sympathetic neuron projection extension. Acts upstream of or within memory and regulation of neuronal synaptic plasticity. Located in cytoplasm; neuronal cell body; and nucleus. Is active in extracellular region. Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; aspergillosis; and schizophrenia. Orthologous to human S100B (S100 calcium binding protein B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI850290; Bpb; MGC74317; protein S100-B; S-100 protein beta chain; S-100 protein subunit beta; S100 calcium-binding protein B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,089,670 - 76,097,153 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,089,687 - 76,096,993 (+)EnsemblGRCm39 Ensembl
GRCm381076,253,836 - 76,261,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,716,581 - 75,724,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,697,569 - 75,703,813 (+)NCBIMGSCv36mm8
Celera1077,297,763 - 77,305,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Acute Coronary Syndrome  (ISO)
Alzheimer's disease  (IMP,ISO)
Animal Disease Models  (ISO)
aspergillosis  (ISO)
asphyxia neonatorum  (ISO)
Attention Deficit and Disruptive Behavior Disorders  (ISO)
autistic disorder  (ISO)
Axenfeld-Rieger syndrome type 3  (ISO)
bacterial meningitis  (ISO)
bipolar disorder  (ISO)
borna disease  (ISO)
brain disease  (ISO)
brain edema  (ISO)
Brain Hypoxia-Ischemia  (ISO)
Brain Injuries  (ISO)
brain ischemia  (ISO)
Brain Neoplasms  (ISO)
Cerebral Hemorrhage  (ISO)
Creutzfeldt-Jakob disease  (ISO)
demyelinating disease  (ISO)
Dental Pulp Exposure  (ISO)
depressive disorder  (ISO)
Diffuse Brain Injuries  (ISO)
dilated cardiomyopathy  (ISO)
Down syndrome  (ISO)
epilepsy  (ISO)
Experimental Diabetes Mellitus  (ISO)
Femoral Fractures  (ISO)
genetic disease  (ISO)
Hematoma  (ISO)
hepatic encephalopathy  (ISO)
hypertension  (ISO)
Hypotension  (ISO)
Inflammation  (ISO)
intracranial vasospasm  (ISO)
intrahepatic cholangiocarcinoma  (ISO)
invasive aspergillosis  (IMP)
Machado-Joseph disease  (ISO)
malignant mesothelioma  (ISO)
Mercury Poisoning, Nervous System  (ISO)
middle cerebral artery infarction  (ISO)
migraine without aura  (ISO)
myocardial infarction  (ISO)
Myocardial Reperfusion Injury  (ISO)
nephrotoxicity  (ISO)
neuromyelitis optica  (ISO)
Parkinson's disease  (IEP,ISO)
relapsing-remitting multiple sclerosis  (ISO)
Reperfusion Injury  (ISO)
schizophrenia  (ISO)
Sepsis  (ISO)
sleep apnea  (ISO)
Spinal Fractures  (ISO)
Sporadic Creutzfeldt-Jakob Disease  (ISO)
Stroke  (ISO)
urinary bladder cancer  (IEP)
visual epilepsy  (ISO)
West Nile fever  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-pilocarpine  (ISO)
(R)-lipoic acid  (ISO)
(R)-noradrenaline  (ISO)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-palmitoylglycerol  (ISO)
3',5'-cyclic AMP  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-dihydroxybenzaldehyde  (ISO)
3,7-dihydropurine-6-thione  (ISO)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
aconitine  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
aluminium atom  (ISO)
aluminium(0)  (ISO)
aminoguanidine  (ISO)
ammonia  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
astemizole  (ISO)
azithromycin  (EXP)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
capsaicin  (ISO)
carbofuran  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
choline  (EXP)
chrysin  (EXP)
cobalt atom  (ISO)
cocaine  (ISO)
Cuprizon  (EXP)
cycloheximide  (ISO)
D-glucose  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenziodolium  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
dimethoate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
fluoxetine  (EXP,ISO)
folic acid  (EXP)
fructose  (EXP)
furosemide  (ISO)
glucose  (EXP)
glyphosate  (EXP,ISO)
heparin  (ISO)
hydrogen peroxide  (ISO)
hydroquinone  (ISO)
indometacin  (ISO)
ketamine  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead diacetate  (ISO)
lipoic acid  (ISO)
manganese(II) chloride  (EXP)
mercaptopurine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
Mesaconitine  (EXP)
methylmercury chloride  (ISO)
microcystin-LR  (EXP)
monascin  (ISO)
morphine  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP)
nitric oxide  (EXP,ISO)
nitroprusside  (ISO)
ouabain  (ISO)
oxidopamine  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (ISO)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
purine-6-thiol  (ISO)
quercetin  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (ISO)
risperidone  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP)
sodium dodecyl sulfate  (ISO)
Soman  (ISO)
streptozocin  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
Tungsten carbide  (ISO)
valproic acid  (EXP,ISO)
veliparib  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Effect of endurance exercise training on the expression of GFAP, S100B, and NSE in the striatum of chronic/progressive mouse model of Parkinson's disease. Al-Jarrah MD and Jamous M, NeuroRehabilitation. 2011;28(4):359-63.
2. Intermittent hypoxia during sleep induces reactive gliosis and limited neuronal death in rats: implications for sleep apnea. Aviles-Reyes RX, etal., J Neurochem. 2010 Feb;112(4):854-69. Epub 2009 Dec 10.
3. Melatonin reduces glial reactivity in the hippocampus, cortex, and cerebellum of streptozotocin-induced diabetic rats. Baydas G, etal., Free Radic Biol Med. 2003 Oct 1;35(7):797-804.
4. Systemic markers of inflammation are independently associated with S100B concentration: results of an observational study in subjects with acute ischaemic stroke. Beer C, etal., J Neuroinflammation. 2010 Oct 29;7:71.
5. Trajectory analysis of serum biomarker concentrations facilitates outcome prediction after pediatric traumatic and hypoxemic brain injury. Berger RP, etal., Dev Neurosci. 2010;32(5-6):396-405. Epub 2010 Sep 18.
6. Neurobiochemical markers of brain damage in cerebrospinal fluid of acute ischemic stroke patients. Brouns R, etal., Clin Chem. 2010 Mar;56(3):451-8. Epub 2009 Dec 3.
7. S100B Protein Regulates Astrocyte Shape and Migration via Interaction with Src Kinase: IMPLICATIONS FOR ASTROCYTE DEVELOPMENT, ACTIVATION, AND TUMOR GROWTH. Brozzi F, etal., J Biol Chem. 2009 Mar 27;284(13):8797-811. Epub 2009 Jan 15.
8. Association of increased S100B, S100A6 and S100P in serum levels with acute coronary syndrome and also with the severity of myocardial infarction in cardiac tissue of rat models with ischemia-reperfusion injury. Cai XY, etal., Atherosclerosis. 2011 Aug;217(2):536-42. Epub 2011 May 27.
9. Pulpar tooth injury induces plastic changes in S100B positive astroglial cells in the trigeminal subnucleus caudalis. Canzobre MC and Rios H, Neurosci Lett. 2010 Feb 5;470(1):71-5. Epub 2009 Dec 30.
10. Peripheral administration of human adrenomedullin and its binding protein attenuates stroke-induced apoptosis and brain injury in rats. Chaung WW, etal., Mol Med. 2011;17(9-10):1075-83. doi: 10.2119/molmed.2010.00104. Epub 2011 Jun 17.
11. Serum levels of S100B and NSE proteins in Alzheimer's disease patients. Chaves ML, etal., J Neuroinflammation. 2010 Jan 27;7:6.
12. The role of cerebrospinal fluid 14-3-3 and other proteins in the diagnosis of sporadic Creutzfeldt-Jakob disease in the UK: a 10-year review. Chohan G, etal., J Neurol Neurosurg Psychiatry. 2010 Nov;81(11):1243-8. Epub 2010 Sep 20.
13. Insulin reduces cerebral ischemia/reperfusion injury in the hippocampus of diabetic rats: a role for glycogen synthase kinase-3beta. Collino M, etal., Diabetes. 2009 Jan;58(1):235-42. Epub 2008 Oct 7.
14. Genetically-determined hyperfunction of the S100B/RAGE axis is a risk factor for aspergillosis in stem cell transplant recipients. Cunha C, etal., PLoS One. 2011;6(11):e27962. doi: 10.1371/journal.pone.0027962. Epub 2011 Nov 17.
15. Usefulness of serum S100B as a marker for the acute phase of aquaporin-4 autoimmune syndrome. Fujii C, etal., Neurosci Lett. 2011 Apr 20;494(1):86-8. Epub 2011 Mar 1.
16. Astrocytes are an early target in osmotic demyelination syndrome. Gankam Kengne F, etal., J Am Soc Nephrol. 2011 Oct;22(10):1834-45. Epub 2011 Sep 1.
17. Increased S100B in cerebrospinal fluid of infants with bacterial meningitis: relationship to brain damage and routine cerebrospinal fluid findings. Gazzolo D, etal., Clin Chem. 2004 May;50(5):941-4.
18. Urinary S100B protein measurements: A tool for the early identification of hypoxic-ischemic encephalopathy in asphyxiated full-term infants. Gazzolo D, etal., Crit Care Med. 2004 Jan;32(1):131-6.
19. Brain damage following severe acute normovolemic hemodilution in combination with controlled hypotension in rats. Ge YL, etal., Acta Anaesthesiol Scand. 2007 Nov;51(10):1331-7.
20. A gene expression map of human chromosome 21 orthologues in the mouse. Gitton Y, etal., Nature 2002 Dec 5;420(6915):586-90.
21. Increased serum S-100B and neuron specific enolase - Potential markers of early nervous system involvement in essential hypertension. Gonzalez-Quevedo A, etal., Clin Biochem. 2011 Feb;44(2-3):154-9. Epub 2010 Dec 1.
22. Septic encephalopathy: relationship to serum and cerebrospinal fluid levels of adhesion molecules, lipid peroxides and S-100B protein. Hamed SA, etal., Neuropediatrics. 2009 Apr;40(2):66-72. Epub 2009 Oct 6.
23. S100B and brain natriuretic peptide predict functional neurological outcome after intracerebral haemorrhage. James ML, etal., Biomarkers. 2009 Sep;14(6):388-94.
24. Early reaction of astroglial cells in rat hippocampus to streptozotocin-induced diabetes. Lebed YV, etal., Neurosci Lett. 2008 Oct 24;444(2):181-5. Epub 2008 Aug 8.
25. Elevated serum S100B levels in acute spinal fracture without head injury. Lee SJ, etal., Emerg Med J. 2010 Mar;27(3):209-12.
26. Oral Uncaria rhynchophylla (UR) reduces kainic acid-induced epileptic seizures and neuronal death accompanied by attenuating glial cell proliferation and S100B proteins in rats. Lin YW and Hsieh CL, J Ethnopharmacol. 2011 May 17;135(2):313-20. Epub 2011 Mar 21.
27. SNPs and haplotypes in the S100B gene reveal association with schizophrenia. Liu J, etal., Biochem Biophys Res Commun. 2005 Mar 4;328(1):335-41. doi: 10.1016/j.bbrc.2004.12.175.
28. Fine structure physical mapping of the region of mouse chromosome 10 homologous to human chromosome 21. MacDonald G, etal., Genomics 1991 Oct;11(2):317-23.
29. Increased cerebrospinal fluid levels of S100B protein in rat model of mania induced by ouabain. Machado-Vieira R, etal., Life Sci. 2004 Dec 31;76(7):805-11.
30. Increased S100B serum levels in dilated cardiomyopathy patients. Mazzini GS, etal., J Card Fail. 2007 Dec;13(10):850-4.
31. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
32. MGDs mouse GO annotations MGD data from the GO Consortium
33. MGD IEA MGD IEA
34. Overexpression of human S100B exacerbates cerebral amyloidosis and gliosis in the Tg2576 mouse model of Alzheimer's disease. Mori T, etal., Glia. 2010 Feb;58(3):300-14.
35. Vitamin D and calcium co-therapy mitigates pre-established cadmium nephropathy by regulating renal calcium homeostatic molecules and improving anti-oxidative and anti-inflammatory activities in rat. Obaid AA, etal., J Trace Elem Med Biol. 2023 May 24;79:127221. doi: 10.1016/j.jtemb.2023.127221.
36. Downregulation of an astrocyte-derived inflammatory protein, S100B, reduces vascular inflammatory responses in brains persistently infected with Borna disease virus. Ohtaki N, etal., J Virol. 2007 Jun;81(11):5940-8. Epub 2007 Mar 21.
37. Biochemical brain markers and purinergic parameters in rat CSF after seizure induced by pentylenetetrazol. Oses JP, etal., Brain Res Bull. 2004 Sep 30;64(3):237-42.
38. Circulating S100B is increased after bilateral femur fracture without brain injury in the rat. Pelinka LE, etal., Br J Anaesth. 2003 Oct;91(4):595-7.
39. Markers for different glial cell responses in multiple sclerosis: clinical and pathological correlations. Petzold A, etal., Brain. 2002 Jul;125(Pt 7):1462-73.
40. Neuronal and glial cerebrospinal fluid protein biomarkers are elevated after West Nile virus infection. Petzold A, etal., Muscle Nerve. 2010 Jan;41(1):42-9.
41. Increased serum S100B levels in chronic schizophrenic patients on long-term clozapine or typical antipsychotics. Qi LY, etal., Neurosci Lett. 2009 Sep 22;462(2):113-7. Epub 2009 Jun 17.
42. Human chromosome 21 gene expression atlas in the mouse. Reymond A, etal., Nature 2002 Dec 5;420(6915):582-6.
43. Mouse MP Annotation Import Pipeline RGD automated import pipeline
44. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
45. Treadmill training restores spatial cognitive deficits and neurochemical alterations in the hippocampus of rats submitted to an intracerebroventricular administration of streptozotocin. Rodrigues L, etal., J Neural Transm. 2010 Nov;117(11):1295-305. Epub 2010 Oct 16.
46. PSAPP mice exhibit regionally selective reductions in gliosis and plaque deposition in response to S100B ablation. Roltsch E, etal., J Neuroinflammation. 2010 Nov 16;7:78.
47. Calcium, troponin, calmodulin, S100 proteins: from myocardial basics to new therapeutic strategies. Schaub MC and Heizmann CW, Biochem Biophys Res Commun. 2008 Apr 25;369(1):247-64. Epub 2007 Oct 25.
48. The danger signal S100B integrates pathogen- and danger-sensing pathways to restrain inflammation. Sorci G, etal., PLoS Pathog. 2011 Mar;7(3):e1001315. Epub 2011 Mar 10.
49. Neurofilaments in blood and CSF for diagnosis and prediction of onset in Creutzfeldt-Jakob disease. Steinacker P, etal., Sci Rep. 2016 Dec 8;6:38737. doi: 10.1038/srep38737.
50. Serum S100B is a useful surrogate marker for long-term outcomes in photochemically-induced thrombotic stroke rat models. Tanaka Y, etal., Life Sci. 2007 Aug 2;81(8):657-63. Epub 2007 Jul 21.
51. S100B interaction with the receptor for advanced glycation end products (RAGE): a novel receptor-mediated mechanism for myocyte apoptosis postinfarction. Tsoporis JN, etal., Circ Res. 2010 Jan 8;106(1):93-101. Epub 2009 Nov 12.
52. Object-based analysis of astroglial reaction and astrocyte subtype morphology after ischemic brain injury. Wagner DC, etal., Acta Neurobiol Exp (Wars). 2013;73(1):79-87.
53. Combined prediction of miR-210 and miR-374a for severity and prognosis of hypoxic-ischemic encephalopathy. Wang Z, etal., Brain Behav. 2017 Dec 30;8(1):e00835. doi: 10.1002/brb3.835. eCollection 2018 Jan.
54. Expression of S100 protein family members in the pathogenesis of bladder tumors. Yao R, etal., Anticancer Res. 2007 Sep-Oct;27(5A):3051-8.
55. Brain-derived neurotrophic factor (BDNF) infusion restored astrocytic plasticity in the hippocampus of a rat model of depression. Ye Y, etal., Neurosci Lett. 2011 Sep 26;503(1):15-9. Epub 2011 Aug 6.
56. Elevated S100B and neuron specific enolase levels in patients with migraine-without aura: evidence for neurodegeneration? Yilmaz N, etal., Cell Mol Neurobiol. 2011 May;31(4):579-85. Epub 2011 Feb 4.
57. Risk variants in the S100B gene, associated with elevated S100B levels, are also associated with visuospatial disability of schizophrenia. Zhai J, etal., Behav Brain Res. 2011 Mar 1;217(2):363-8. Epub 2010 Nov 9.
58. Serum concentrations of NSE and S100B in spinocerebellar ataxia type 3/Machado-Joseph disease. Zhou J, etal., Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2011 Jun;36(6):504-10.
59. The usefulness of S100B, NSE, GFAP, NF-H, secretagogin and Hsp70 as a predictive biomarker of outcome in children with traumatic brain injury. Zurek J and Fedora M, Acta Neurochir (Wien). 2011 Oct 7.
Additional References at PubMed
PMID:1359872   PMID:1783381   PMID:1975791   PMID:2323034   PMID:2592414   PMID:7511035   PMID:7546735   PMID:7558021   PMID:7582813   PMID:7749229   PMID:7851892   PMID:7916323  
PMID:8137163   PMID:8202493   PMID:8376406   PMID:8565847   PMID:8611721   PMID:8787758   PMID:8846093   PMID:8889548   PMID:8898859   PMID:8946407   PMID:8949922   PMID:9232833  
PMID:9628829   PMID:9754881   PMID:9834195   PMID:10051316   PMID:10349636   PMID:10395934   PMID:10467564   PMID:10588868   PMID:10613844   PMID:10617132   PMID:10655525   PMID:10837142  
PMID:11027232   PMID:11032813   PMID:11042146   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11222062   PMID:11409899   PMID:11835317   PMID:11872254   PMID:11891290   PMID:11955448  
PMID:12042313   PMID:12377780   PMID:12393261   PMID:12466851   PMID:12477932   PMID:12490199   PMID:12508309   PMID:12526882   PMID:12533614   PMID:12561079   PMID:12618141   PMID:12645009  
PMID:12673835   PMID:12742260   PMID:12812790   PMID:12842915   PMID:14610273   PMID:14625556   PMID:14638863   PMID:14648547   PMID:14681479   PMID:15102707   PMID:15126113   PMID:15236402  
PMID:15248193   PMID:15336958   PMID:15489334   PMID:15555923   PMID:15572147   PMID:15621007   PMID:15699280   PMID:15714282   PMID:15782413   PMID:15810011   PMID:15852015   PMID:15882580  
PMID:15944126   PMID:16014513   PMID:16141072   PMID:16141073   PMID:16267237   PMID:16330018   PMID:16467531   PMID:16518823   PMID:16537572   PMID:16600520   PMID:16938360   PMID:17024657  
PMID:17042795   PMID:17078026   PMID:17178400   PMID:17331210   PMID:17362503   PMID:17391983   PMID:17436285   PMID:17537790   PMID:17553984   PMID:17661397   PMID:17729158   PMID:17942321  
PMID:18024993   PMID:18031722   PMID:18090917   PMID:18215621   PMID:18287078   PMID:18451356   PMID:18501628   PMID:18551627   PMID:18599158   PMID:18638525   PMID:18641643   PMID:18649404  
PMID:18669640   PMID:18728187   PMID:18812013   PMID:18854036   PMID:18945900   PMID:19298847   PMID:19345204   PMID:19373938   PMID:19389366   PMID:19544582   PMID:19679874   PMID:19701198  
PMID:19713945   PMID:19718438   PMID:19723505   PMID:20069545   PMID:20096683   PMID:20099023   PMID:20203209   PMID:20387078   PMID:20457761   PMID:20463215   PMID:20549747   PMID:20554876  
PMID:20610746   PMID:20825492   PMID:20830809   PMID:20881139   PMID:20935640   PMID:21048147   PMID:21122816   PMID:21125652   PMID:21146588   PMID:21147077   PMID:21220101   PMID:21264954  
PMID:21267068   PMID:21319224   PMID:21376255   PMID:21545793   PMID:21677750   PMID:21693512   PMID:21693575   PMID:21776083   PMID:21779383   PMID:21856951   PMID:21857657   PMID:21873635  
PMID:21943152   PMID:21957238   PMID:22046273   PMID:22056141   PMID:22071110   PMID:22103411   PMID:22156770   PMID:22160720   PMID:22173850   PMID:22223678   PMID:22234186   PMID:22266424  
PMID:22461560   PMID:22508049   PMID:22522171   PMID:22542597   PMID:22689348   PMID:22705452   PMID:22766236   PMID:22828627   PMID:22906231   PMID:22918885   PMID:22951639   PMID:22956844  
PMID:23000886   PMID:23100423   PMID:23132855   PMID:23169921   PMID:23196656   PMID:23223288   PMID:23293287   PMID:23382203   PMID:23482493   PMID:23695674   PMID:23719262   PMID:23729438  
PMID:23744272   PMID:23804363   PMID:23806210   PMID:23821580   PMID:23828756   PMID:23862023   PMID:23895693   PMID:23899512   PMID:23948251   PMID:24120991   PMID:24236178   PMID:24239551  
PMID:24301385   PMID:24466267   PMID:24582971   PMID:24652767   PMID:24717433   PMID:24808824   PMID:24859200   PMID:24931760   PMID:24952961   PMID:24979729   PMID:24983448   PMID:25044744  
PMID:25079316   PMID:25151262   PMID:25152033   PMID:25176044   PMID:25285789   PMID:25327963   PMID:25331604   PMID:25382142   PMID:25433207   PMID:25482070   PMID:25556712   PMID:25564653  
PMID:25757744   PMID:25817898   PMID:25883935   PMID:25888505   PMID:25934499   PMID:25995483   PMID:26115514   PMID:26204512   PMID:26257608   PMID:26348989   PMID:26387477   PMID:26395491  
PMID:26499172   PMID:26571399   PMID:26576643   PMID:26644518   PMID:26651999   PMID:26657772   PMID:26740489   PMID:26858600   PMID:26907191   PMID:27076429   PMID:27142930   PMID:27196066  
PMID:27291295   PMID:27294512   PMID:27318131   PMID:27392482   PMID:27601207   PMID:27693255   PMID:27707970   PMID:27798843   PMID:27871073   PMID:27914912   PMID:27965439   PMID:28087714  
PMID:28174179   PMID:28266561   PMID:28280459   PMID:28373281   PMID:28402856   PMID:28656980   PMID:28684471   PMID:28728023   PMID:28965759   PMID:28970581   PMID:28984873   PMID:29285798  
PMID:29326173   PMID:29483282   PMID:29499206   PMID:29732603   PMID:29748916   PMID:29779941   PMID:29807017   PMID:29899142   PMID:30076898   PMID:30127721   PMID:30174314   PMID:30229393  
PMID:30266827   PMID:30292786   PMID:30348677   PMID:30472119   PMID:30668728   PMID:30759972   PMID:30819894   PMID:30870413   PMID:30870432   PMID:30973865   PMID:31043739   PMID:31065682  
PMID:31082736   PMID:31143101   PMID:31200100   PMID:31318166   PMID:31586559   PMID:31690636   PMID:31696965   PMID:31724774   PMID:31801076   PMID:31953387   PMID:32017713   PMID:32024956  
PMID:32081718   PMID:32220631   PMID:32240725   PMID:32291340   PMID:32325033   PMID:32393787   PMID:32579270   PMID:32735823   PMID:33116259   PMID:33460952   PMID:33462112   PMID:33938018  
PMID:34010654   PMID:34046991   PMID:34107249   PMID:34351428   PMID:34407390   PMID:34419458   PMID:34508581   PMID:34587162   PMID:34615523   PMID:34620853   PMID:34737342   PMID:34741005  
PMID:34772946   PMID:34815315   PMID:34884823   PMID:34935271   PMID:35019839   PMID:35087169   PMID:35089129   PMID:35126044   PMID:35361962   PMID:35379995   PMID:35858542   PMID:35876806  
PMID:35906071   PMID:36029179   PMID:36044858   PMID:36130507   PMID:36265906   PMID:36305367   PMID:36496200   PMID:36517477   PMID:36573432   PMID:36576725   PMID:36641753   PMID:36737666  
PMID:36894021   PMID:36899866   PMID:36915679   PMID:36916004   PMID:37456993   PMID:37607547   PMID:38101413   PMID:38159478   PMID:38195497   PMID:38278860  


Genomics

Comparative Map Data
S100b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,089,670 - 76,097,153 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1076,089,687 - 76,096,993 (+)EnsemblGRCm39 Ensembl
GRCm381076,253,836 - 76,261,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,716,581 - 75,724,064 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361075,697,569 - 75,703,813 (+)NCBIMGSCv36mm8
Celera1077,297,763 - 77,305,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.76NCBI
S100B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382146,598,604 - 46,605,082 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2146,598,604 - 46,605,208 (-)EnsemblGRCh38hg38GRCh38
GRCh372148,018,517 - 48,024,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,842,959 - 46,849,463 (-)NCBINCBI36Build 36hg18NCBI36
Build 342146,842,958 - 46,849,424NCBI
Celera2133,131,698 - 33,138,202 (-)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2133,398,429 - 33,404,960 (-)NCBIHuRef
CHM1_12147,579,370 - 47,585,892 (-)NCBICHM1_1
T2T-CHM13v2.02144,984,829 - 44,991,348 (-)NCBIT2T-CHM13v2.0
S100b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82012,372,345 - 12,381,159 (-)NCBIGRCr8
mRatBN7.22012,372,866 - 12,381,619 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2012,372,881 - 12,394,743 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2013,071,830 - 13,080,530 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02012,432,755 - 12,441,455 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02012,904,538 - 12,913,238 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02013,130,633 - 13,142,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2013,130,636 - 13,142,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02015,287,745 - 15,296,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,791,440 - 12,824,508 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12012,791,666 - 12,824,735 (-)NCBI
Celera2013,867,276 - 13,875,895 (-)NCBICelera
Cytogenetic Map20p12NCBI
S100b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,972,584 - 42,980,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,972,584 - 42,980,510 (-)NCBIChiLan1.0ChiLan1.0
S100B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22242,780,225 - 42,786,453 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12137,589,861 - 37,596,083 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02133,063,845 - 33,070,073 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12146,197,750 - 46,203,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2146,197,750 - 46,203,953 (-)Ensemblpanpan1.1panPan2
S100B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13139,783,990 - 39,788,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3139,784,506 - 39,788,183 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3139,014,186 - 39,018,506 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03139,427,666 - 39,431,986 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13139,288,949 - 39,293,268 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03139,249,760 - 39,254,080 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03139,768,041 - 39,772,361 (-)NCBIUU_Cfam_GSD_1.0
S100B
(Sus scrofa - pig)		 No map positions available.
S100B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1290,188,820 - 90,194,986 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl290,188,639 - 90,195,023 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605418,611,924 - 18,618,244 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474531,645,927 - 31,652,832 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474531,645,927 - 31,652,846 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S100b
137 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:261
Interacting mature miRNAs:294
Transcripts:ENSMUST00000036387
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
AI850290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371075,723,547 - 75,723,689UniSTSGRCm37
Celera1077,304,729 - 77,304,871UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10871.11UniSTS
UniSTS:224308  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381076,260,202 - 76,260,357UniSTSGRCm38
MGSCv371075,722,947 - 75,723,102UniSTSGRCm37
Celera1077,304,129 - 77,304,284UniSTS
Cytogenetic Map10C1UniSTS
cM Map1041.0UniSTS
S100b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1041.0UniSTS
AI850290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381076,260,802 - 76,260,944UniSTSGRCm38
MGSCv371075,723,547 - 75,723,689UniSTSGRCm37
Celera1077,304,729 - 77,304,871UniSTS
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH10871.11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000036387   ⟹   ENSMUSP00000047968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1076,089,687 - 76,096,993 (+)Ensembl
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)Ensembl
RefSeq Acc Id: NM_009115   ⟹   NP_033141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391076,089,670 - 76,097,153 (+)NCBI
GRCm381076,253,836 - 76,261,319 (+)ENTREZGENE
MGSCv371075,716,581 - 75,724,064 (+)RGD
Celera1077,297,763 - 77,305,246 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033141   ⟸   NM_009115
- UniProtKB: P50114 (UniProtKB/Swiss-Prot),   Q3UY00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000047968   ⟸   ENSMUST00000036387
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P50114-F1-model_v2 AlphaFold P50114 1-92 view protein structure

Promoters
RGD ID:6819876
Promoter ID:MM_KWN:4622
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain
Transcripts:NM_009115
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,716,371 - 75,716,871 (+)MPROMDB
RGD ID:8672370
Promoter ID:EPDNEW_M14215
Type:initiation region
Name:S100b_1
Description:Mus musculus S100 protein, beta polypeptide, neural , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381076,253,909 - 76,253,969EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98217 AgrOrtholog
Ensembl Genes ENSMUSG00000033208 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000036387 ENTREZGENE
  ENSMUST00000036387.8 UniProtKB/Swiss-Prot
Gene3D-CATH EF-hand UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98217 ENTREZGENE
NCBI Gene 20203 ENTREZGENE
PANTHER PROTEIN S100-A1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EF-hand_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen S100b PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_CABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P50114 ENTREZGENE
  Q3UY00 ENTREZGENE, UniProtKB/TrEMBL
  S100B_MOUSE UniProtKB/Swiss-Prot