Nr3c1 (nuclear receptor subfamily 3, group C, member 1) - Rat Genome Database

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Gene: Nr3c1 (nuclear receptor subfamily 3, group C, member 1) Mus musculus
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Symbol: Nr3c1
Name: nuclear receptor subfamily 3, group C, member 1
RGD ID: 10691
MGI Page MGI
Description: Enables several functions, including identical protein binding activity; nuclear glucocorticoid receptor activity; and protein kinase binding activity. Involved in several processes, including glial cell differentiation; glucocorticoid receptor signaling pathway; and positive regulation of miRNA transcription. Acts upstream of or within several processes, including maternal behavior; regulation of glucocorticoid biosynthetic process; and regulation of gluconeogenesis. Located in cytosol; membrane; and nucleus. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and leg muscle. Used to study primary hyperaldosteronism. Human ortholog(s) of this gene implicated in several diseases, including anorexia nervosa; lung disease (multiple); major depressive disorder; obesity; and renal cell carcinoma. Orthologous to human NR3C1 (nuclear receptor subfamily 3 group C member 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G; glucocorticoid receptor; glucocorticoid receptor 1; glucocorticoid receptor subtype P; GR; Grl; Grl-1; Grl1; nuclear receptor subfamily 3 group C member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391839,543,598 - 39,652,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1839,543,598 - 39,652,474 (-)EnsemblGRCm39 Ensembl
GRCm381839,410,545 - 39,519,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1839,410,545 - 39,519,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv371839,570,199 - 39,646,899 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361839,537,961 - 39,615,820 (-)NCBIMGSCv36mm8
Celera1840,761,405 - 40,838,026 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1821.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
46, XX Disorders of Sex Development  (ISO)
anorexia nervosa  (ISO)
asthma  (ISO)
atrial fibrillation  (ISO)
bipolar disorder  (ISO)
brain ischemia  (ISO)
Burns  (ISO)
cataract  (ISO)
chronic obstructive pulmonary disease  (ISO)
cocaine abuse  (ISO)
Cocaine-Related Disorders  (ISO)
congestive heart failure  (ISO)
coronary artery disease  (ISO)
Cushing Syndrome  (IMP,ISO)
depressive disorder  (ISO)
Drug-Related Side Effects and Adverse Reactions  (ISO)
Edema  (ISO)
end stage renal disease  (ISO)
endometriosis  (ISO)
Endotoxemia  (ISO)
Experimental Autoimmune Encephalomyelitis  (IMP)
Experimental Diabetes Mellitus  (ISO)
familial adenomatous polyposis 1  (ISO)
fetal alcohol spectrum disorder  (ISO)
Fetal Growth Retardation  (ISO)
genetic disease  (ISO)
Glucocorticoid Receptor Deficiency  (ISO)
glucose metabolism disease  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
hypertension  (IMP,ISO)
hypokalemia  (ISO)
interstitial lung disease  (ISO)
lipoid nephrosis  (ISO)
lung disease  (ISO)
lung non-small cell carcinoma  (ISO)
lupus nephritis  (IEP,ISO)
major depressive disorder  (ISO)
Malocclusion  (ISO)
mood disorder  (ISO)
muscular atrophy  (ISO)
nephrotic syndrome  (ISO)
nephrotic syndrome type 2  (ISO)
Neurodevelopmental Disorders  (ISO)
obesity  (ISO)
obstructive lung disease  (ISO)
obstructive sleep apnea  (ISO)
ocular hypertension  (ISO)
opioid abuse  (ISO)
Perennial Allergic Rhinitis  (ISO)
polycystic ovary syndrome  (ISO)
post-traumatic stress disorder  (ISO)
Prenatal Exposure Delayed Effects  (ISO)
primary biliary cholangitis  (ISO)
primary hyperaldosteronism  (IAGP)
prostate cancer  (ISO)
Prostatic Neoplasms  (ISO)
psychotic disorder  (ISO)
pulmonary sarcoidosis  (ISO)
renal cell carcinoma  (ISO)
rheumatoid arthritis  (ISO)
schizophrenia  (ISO)
Sepsis  (IEP,ISO)
sinusitis  (ISO)
status epilepticus  (ISO)
stress-related disorder  (ISO)
Stroke  (ISO)
Transplant Rejection  (ISO)
type 2 diabetes mellitus  (ISO)
uveitis  (ISO)
visual epilepsy  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(-)-anisomycin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
(3,4-dihydroxyphenyl)acetic acid  (EXP)
(S)-amphetamine  (EXP)
(S)-colchicine  (ISO)
(S)-nicotine  (EXP,ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2,3,4,7,8-Hexachlorodibenzofuran  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1,4-dithiothreitol  (ISO)
1-[2-(benzhydryloxy)ethyl]-4-(3-phenylpropyl)piperazine  (EXP)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-bromopropane  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-naphthyl isothiocyanate  (ISO)
11-deoxycorticosterone  (ISO)
11-deoxycortisol  (ISO)
15-deoxy-Delta(12,14)-prostaglandin J2  (EXP,ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17alpha-hydroxyprogesterone  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',4,4'-tetrachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-Trimethylbenzaldehyde  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-(3,4-dimethoxyphenyl)-5-\{[2-(3,4-dimethoxyphenyl)ethyl](methyl)amino\}-2-(propan-2-yl)pentanenitrile  (EXP)
2-aminophenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-Dimethylbenzaldehyde  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3,5,6-trichloro-2-pyridinol  (EXP)
3,5,6-trichloropyridine-2-one  (EXP)
3,5-di-tert-Butyl-4-hydroxybenzaldehyde  (ISO)
3-methylcholanthrene  (ISO)
3-phenoxybenzoic acid  (EXP,ISO)
3alpha-hydroxy-5beta-pregnan-20-one  (EXP)
4'-hydroxydiclofenac  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxynon-2-enal  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetamide  (ISO)
acrolein  (ISO)
actinomycin D  (EXP)
aflatoxin B1  (ISO)
agomelatine  (EXP)
albuterol  (ISO)
aldehydo-D-glucose  (EXP)
aldosterone  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-pinene  (ISO)
amiodarone  (ISO)
amitriptyline  (EXP)
ammonium chloride  (ISO)
amphetamine  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (EXP)
arsenic acid  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
Aurin  (ISO)
avobenzone  (ISO)
aziridines  (EXP,ISO)
azoxystrobin  (ISO)
beclomethasone  (ISO)
benzbromarone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzoyl peroxide  (EXP)
betamethasone  (ISO)
betulin  (ISO)
bifenthrin  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol A diglycidyl ether  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (ISO)
budesonide  (ISO)
butachlor  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (EXP)
Butylparaben  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (EXP,ISO)
carbon nanotube  (EXP)
celecoxib  (ISO)
CGP 52608  (ISO)
chlorpromazine  (EXP)
choline  (EXP)
chromium(6+)  (ISO)
ciclopirox  (ISO)
cidofovir anhydrous  (ISO)
ciglitazone  (EXP)
cisplatin  (EXP,ISO)
citalopram  (ISO)
clodronic acid  (ISO)
clofibrate  (ISO)
clotrimazole  (ISO)
clozapine  (EXP)
cobalt atom  (ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (ISO)
compound 48/80  (EXP)
copper(II) sulfate  (ISO)
corticosterone  (EXP,ISO)
corticotropin  (ISO)
cortisol  (EXP,ISO)
cortisone  (ISO)
cortivazol  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cycloheximide  (EXP,ISO)
cyclosporin A  (EXP,ISO)
Cyclosporin H  (EXP)
cyhalothrin  (ISO)
cypermethrin  (ISO)
D-glucose  (EXP)
daunorubicin  (ISO)
DDE  (EXP,ISO)
DDT  (ISO)
deflazacort  (ISO)
deguelin  (ISO)
dehydroepiandrosterone  (ISO)
desipramine  (ISO)
dexamethasone  (EXP,ISO)
Diallyl sulfide  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (EXP)
diclofenac  (ISO)
Dicyclohexyl phthalate  (EXP)
diethyl hydrogen phosphate  (ISO)
diethyl phthalate  (EXP)
Diisodecyl phthalate  (EXP)
diisopropyl fluorophosphate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
dopamine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
elemental selenium  (ISO)
endrin  (EXP)
entinostat  (ISO)
enzacamene  (ISO)
ethanol  (EXP,ISO)
ethiofencarb  (ISO)
ethyl myristate  (ISO)
farglitazar  (ISO)
fenchone  (ISO)
fenpyroximate  (ISO)
fenvalerate  (ISO)
fludrocortisone  (ISO)
flumethasone  (ISO)
fluoranthene  (EXP)
fluoxetine  (EXP,ISO)
flutamide  (ISO)
fluticasone  (ISO)
folic acid  (EXP,ISO)
folpet  (EXP)
formaldehyde  (ISO)
formoterol fumarate  (ISO)
fulvestrant  (ISO)
fumonisin B1  (EXP)
furan  (ISO)
Fusarenone X  (EXP)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (ISO)
geraniol  (ISO)
ginsenoside Re  (ISO)
glafenine  (ISO)
glucose  (EXP)
hexadecanoic acid  (ISO)
homovanillic acid  (EXP)
hydralazine  (ISO)
hydrogen cyanide  (EXP)
hydrogen peroxide  (ISO)
ibuprofen  (EXP,ISO)
idazoxan  (ISO)
irinotecan  (ISO)
isoquinolines  (ISO)
ketoconazole  (EXP,ISO)
L-1,4-dithiothreitol  (ISO)
L-ascorbic acid  (ISO)
L-ethionine  (ISO)
L-methionine  (EXP)
lamotrigine  (ISO)
Laurolactam  (ISO)
lead diacetate  (EXP)
lead(0)  (EXP,ISO)
leflunomide  (ISO)
linuron  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium atom  (EXP,ISO)
lithium chloride  (ISO)
lithium hydride  (EXP,ISO)
LY 379268  (ISO)
medroxyprogesterone acetate  (ISO)
melatonin  (EXP,ISO)
menadione  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
metformin  (ISO)
methamphetamine  (EXP,ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
methylparaben  (EXP)
methylprednisolone aceponate  (ISO)
methylseleninic acid  (ISO)
methyltestosterone  (ISO)
miconazole  (ISO)
mifepristone  (EXP,ISO)
mirex  (ISO)
mitomycin C  (EXP)
mitoxantrone  (ISO)
molybdate  (ISO)
mometasone furoate  (ISO)
Monobutylphthalate  (ISO)
morphine  (ISO)
N,O-dimethyltyramine  (EXP)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-butylbenzenesulfonamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP,ISO)
nimesulide  (ISO)
nitric oxide  (ISO)
okadaic acid  (EXP)
omeprazole  (ISO)
onapristone  (ISO)
oxaliplatin  (ISO)
oxybenzone  (ISO)
ozone  (EXP,ISO)
paracetamol  (ISO)
paraquat  (ISO)
pararosaniline free base  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP,ISO)
Phenoxybenzamine  (EXP)
phenylbutazone  (ISO)
phenylephrine  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
phorone  (ISO)
phosgene  (EXP)
pirinixic acid  (EXP,ISO)
Polygodial  (ISO)
potassium chloride  (ISO)
potassium chromate  (ISO)
potassium cyanide  (EXP)
prednisolone  (ISO)
prednisone  (EXP)
prednylidene  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (EXP,ISO)
promegestone  (ISO)
propiconazole  (EXP)
propylparaben  (ISO)
protoporphyrin  (ISO)
puromycin  (EXP)
pyrimidifen  (ISO)
quercetin  (EXP,ISO)
raloxifene  (ISO)
reactive oxygen species  (ISO)
reserpine  (ISO)
resmethrin  (ISO)
resveratrol  (EXP,ISO)
rifampicin  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
S-methyl methanethiosulfonate  (ISO)
Salmeterol xinafoate  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
selenium atom  (ISO)
selenous acid  (ISO)
senecionine  (ISO)
silicon dioxide  (EXP)
sirolimus  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
spiperone  (EXP)
spiroxamine  (ISO)
succimer  (EXP)
sulfasalazine  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
tamoxifen  (EXP,ISO)
Tanshinone I  (ISO)
tauroursodeoxycholic acid  (ISO)
tebufenpyrad  (ISO)
tenofovir disoproxil fumarate  (ISO)
terbutaline  (ISO)
teriflunomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetramethrin  (ISO)
tetraphene  (ISO)
thifluzamide  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
thyroxine  (ISO)
titanium dioxide  (EXP)
tolcapone  (ISO)
tolterodine tartrate  (ISO)
tolylfluanid  (EXP,ISO)
topotecan  (ISO)
torcetrapib  (ISO)
triamcinolone  (ISO)
triamcinolone acetonide  (EXP,ISO)
tributyl phosphate  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
trichostatin A  (ISO)
trifluoperazine  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
Tris(2-ethylhexyl) phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
undecan-2-one  (ISO)
urethane  (ISO)
ursodeoxycholic acid  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
venlafaxine hydrochloride  (ISO)
verapamil  (EXP)
vinclozolin  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc oxide  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adrenal gland development  (IMP)
androgen metabolic process  (ISO)
astrocyte differentiation  (IMP)
cellular response to dexamethasone stimulus  (ISO)
cellular response to glucocorticoid stimulus  (ISO)
cellular response to magnesium ion  (ISO)
cellular response to steroid hormone stimulus  (ISO)
cellular response to transforming growth factor beta stimulus  (ISO)
chromatin organization  (IEA)
chromatin remodeling  (ISO)
circadian rhythm  (ISO)
corticosteroid receptor signaling pathway  (ISO)
female pregnancy  (ISO)
gene expression  (IMP)
glucocorticoid mediated signaling pathway  (IEA)
glucocorticoid metabolic process  (IMP)
glucocorticoid receptor signaling pathway  (IDA,IMP)
intracellular steroid hormone receptor signaling pathway  (IBA)
lung development  (ISO)
mammary gland duct morphogenesis  (IMP)
maternal behavior  (IGI)
microglia differentiation  (IMP)
motor behavior  (IMP)
muscle atrophy  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of DNA-templated transcription  (ISO)
negative regulation of synaptic plasticity  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
negative regulation of vascular permeability  (ISO)
neuroinflammatory response  (IMP)
positive regulation of cell growth involved in cardiac muscle cell development  (ISO)
positive regulation of dendritic spine development  (ISO)
positive regulation of glucocorticoid receptor signaling pathway  (ISO)
positive regulation of glutamate secretion  (ISO)
positive regulation of miRNA transcription  (IDA,ISO)
positive regulation of neuron apoptotic process  (IGI)
positive regulation of transcription by RNA polymerase II  (ISO)
regulation of cell population proliferation  (ISO)
regulation of DNA-templated transcription  (IDA,ISO)
regulation of glucocorticoid biosynthetic process  (IMP)
regulation of gluconeogenesis  (IMP)
regulation of glucose metabolic process  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
response to activity  (ISO)
response to arsenic-containing substance  (ISO)
response to calcium ion  (ISO)
response to corticosterone  (ISO)
response to dexamethasone  (ISO)
response to electrical stimulus  (ISO)
response to inactivity  (ISO)
response to insulin  (ISO)
response to mercury ion  (ISO)
synaptic transmission, glutamatergic  (IMP)
transcription initiation-coupled chromatin remodeling  (ISO)

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adipose tissue distribution  (IAGP)
abnormal adrenal chromaffin cell morphology  (IAGP)
abnormal adrenal cortex morphology  (IAGP)
abnormal adrenal gland morphology  (IAGP)
abnormal adrenal gland zona fasciculata morphology  (IAGP)
abnormal adrenal gland zona glomerulosa morphology  (IAGP)
abnormal adrenal gland zona reticularis morphology  (IAGP)
abnormal alveolocapillary membrane morphology  (IAGP)
abnormal atrial thrombosis  (IAGP)
abnormal behavioral response to addictive substance  (IAGP)
abnormal blood-brain barrier function  (IAGP)
abnormal bone mineral density  (IAGP)
abnormal bone ossification  (IAGP)
abnormal branching involved in terminal bronchiole morphogenesis  (IAGP)
abnormal calcium ion homeostasis  (IAGP)
abnormal cecum morphology  (IAGP)
abnormal circulating corticosterone level  (IAGP)
abnormal fear/anxiety-related behavior  (IAGP)
abnormal heart echocardiography feature  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal hypothalamus physiology  (IAGP)
abnormal interferon level  (IAGP)
abnormal interleukin level  (IAGP)
abnormal interleukin-6 secretion  (IAGP)
abnormal liver physiology  (IAGP)
abnormal lung development  (IAGP)
abnormal lung morphology  (IAGP)
abnormal mammary gland alveolus morphology  (IAGP)
abnormal mammary gland growth during pregnancy  (IAGP)
abnormal monocyte cell number  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal osteoblast differentiation  (IAGP)
abnormal osteoblast physiology  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal pulmonary alveolus epithelial cell morphology  (IAGP)
abnormal pulmonary alveolus morphology  (IAGP)
abnormal respiratory system development  (IAGP)
abnormal response to CNS ischemic injury  (IAGP)
abnormal surfactant secretion  (IAGP)
abnormal thoracic cavity morphology  (IAGP)
abnormal thymocyte apoptosis  (IAGP)
abnormal tumor necrosis factor level  (IAGP)
absent adrenal medulla  (IAGP)
absent adrenergic chromaffin cells  (IAGP)
absent circulating adrenaline  (IAGP)
absent long-term depression  (IAGP)
atelectasis  (IAGP)
behavioral despair  (IAGP)
cardiac fibrosis  (IAGP)
cardiac hypertrophy  (IAGP)
cecum inflammation  (IAGP)
congestive heart failure  (IAGP)
cyanosis  (IAGP)
decreased adrenal gland zona fasciculata size  (IAGP)
decreased adrenaline level  (IAGP)
decreased anxiety-related response  (IAGP)
decreased B cell number  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased bone trabecula number  (IAGP)
decreased cardiac muscle contractility  (IAGP)
decreased CD4-positive, alpha-beta T cell number  (IAGP)
decreased CD8-positive, alpha-beta T cell number  (IAGP)
decreased circulating adrenocorticotropin level  (IAGP)
decreased circulating corticosterone level  (IAGP)
decreased circulating noradrenaline level  (IAGP)
decreased circulating testosterone level  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased erythroid progenitor cell number  (IAGP)
decreased locomotor activity  (IAGP)
decreased macrophage cell number  (IAGP)
decreased noradrenaline level  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased single-positive T cell number  (IAGP)
decreased survivor rate  (IAGP)
decreased susceptibility to neuronal excitotoxicity  (IAGP)
decreased T cell apoptosis  (IAGP)
decreased thymocyte apoptosis  (IAGP)
decreased type I pneumocyte number  (IAGP)
dilated heart left ventricle  (IAGP)
enlarged adrenal glands  (IAGP)
enlarged adrenocortical cell nuclei  (IAGP)
enlarged adrenocortical cells  (IAGP)
enlarged heart  (IAGP)
heart inflammation  (IAGP)
hypersecretion of corticotropin-releasing hormone  (IAGP)
impaired lung alveolus development  (IAGP)
increased adrenal gland zona fasciculata size  (IAGP)
increased adrenocorticotropin level  (IAGP)
increased body length  (IAGP)
increased bone trabecular spacing  (IAGP)
increased circulating adrenocorticotropin level  (IAGP)
increased circulating aldosterone level  (IAGP)
increased circulating angiotensinogen level  (IAGP)
increased circulating corticosterone level  (IAGP)
increased circulating glucocorticoid level  (IAGP)
increased heart left ventricle weight  (IAGP)
increased heart weight  (IAGP)
increased interleukin-1 beta secretion  (IAGP)
increased liver triglyceride level  (IAGP)
increased lung weight  (IAGP)
increased mean systemic arterial blood pressure  (IAGP)
increased myocardial fiber size  (IAGP)
increased renin activity  (IAGP)
increased susceptibility to endotoxin shock  (IAGP)
increased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
increased systemic arterial systolic blood pressure  (IAGP)
increased type II pneumocyte number  (IAGP)
lethality, complete penetrance  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
osteoporosis  (IAGP)
pathological neovascularization  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
poor circulation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
pulmonary hyperplasia  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
small adrenal glands  (IAGP)
thick pulmonary interalveolar septum  (IAGP)
thick ventricular wall  (IAGP)
thin adrenal cortex  (IAGP)
thymus hypoplasia  (IAGP)
References

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PMID:22206943   PMID:22215440   PMID:22232675   PMID:22235328   PMID:22294744   PMID:22354783   PMID:22380541   PMID:22447981   PMID:22491064   PMID:22565294   PMID:22585571   PMID:22622902  
PMID:22633955   PMID:22653054   PMID:22696295   PMID:22717988   PMID:22848740   PMID:22900281   PMID:22917621   PMID:22919064   PMID:22922362   PMID:22922815   PMID:22940619   PMID:22951731  
PMID:22962254   PMID:22962255   PMID:22980941   PMID:22988430   PMID:23071095   PMID:23159735   PMID:23185000   PMID:23248291   PMID:23293024   PMID:23313770   PMID:23329050   PMID:23339081  
PMID:23425966   PMID:23428870   PMID:23493372   PMID:23508109   PMID:23516508   PMID:23595884   PMID:23637179   PMID:23665916   PMID:23671185   PMID:23696835   PMID:23703529   PMID:23726907  
PMID:23727405   PMID:23733748   PMID:23751362   PMID:23756710   PMID:23803465   PMID:23878367   PMID:23878391   PMID:23897430   PMID:23950223   PMID:23977333   PMID:23979842   PMID:23980098  
PMID:24004655   PMID:24013726   PMID:24053134   PMID:24082121   PMID:24217809   PMID:24370181   PMID:24399741   PMID:24424066   PMID:24574986   PMID:24603680   PMID:24618690   PMID:24642507  
PMID:24736997   PMID:24755251   PMID:24755652   PMID:24777604   PMID:24817119   PMID:24933248   PMID:24952961   PMID:25057793   PMID:25061560   PMID:25099603   PMID:25135720   PMID:25135974  
PMID:25168761   PMID:25193158   PMID:25254959   PMID:25299055   PMID:25317829   PMID:25358639   PMID:25401790   PMID:25447332   PMID:25510864   PMID:25535891   PMID:25575455   PMID:25661788  
PMID:25733567   PMID:25746451   PMID:25772595   PMID:25793778   PMID:25810297   PMID:25827749   PMID:25847991   PMID:25866873   PMID:25970251   PMID:25995337   PMID:26001834   PMID:26046806  
PMID:26061727   PMID:26068518   PMID:26135882   PMID:26183376   PMID:26268211   PMID:26287126   PMID:26440998   PMID:26479079   PMID:26481542   PMID:26581598   PMID:26598666   PMID:26651607  
PMID:26711253   PMID:26712002   PMID:26712006   PMID:26889940   PMID:26901633   PMID:27057751   PMID:27106108   PMID:27133954   PMID:27150575   PMID:27177020   PMID:27226320   PMID:27240530  
PMID:27367842   PMID:27451392   PMID:27551048   PMID:27554624   PMID:27576532   PMID:27578785   PMID:27578791   PMID:27596806   PMID:27600171   PMID:27650854   PMID:27686098   PMID:27754788  
PMID:27777311   PMID:27784782   PMID:27888447   PMID:27903902   PMID:28049829   PMID:28196601   PMID:28240298   PMID:28287112   PMID:28288100   PMID:28314773   PMID:28359725   PMID:28484221  
PMID:28515280   PMID:28650975   PMID:28751364   PMID:28768721   PMID:28782590   PMID:28852159   PMID:28928247   PMID:28965332   PMID:28986096   PMID:29030008   PMID:29038250   PMID:29069356  
PMID:29141867   PMID:29174640   PMID:29217668   PMID:29230949   PMID:29266408   PMID:29324769   PMID:29396162   PMID:29424686   PMID:29440508   PMID:29514097   PMID:29579167   PMID:29618057  
PMID:29657031   PMID:29672221   PMID:29746256   PMID:29789551   PMID:29795232   PMID:29890290   PMID:29934589   PMID:29941090   PMID:29965797   PMID:30003950   PMID:30006609   PMID:30038578  
PMID:30126083   PMID:30127438   PMID:30188986   PMID:30455377   PMID:30487639   PMID:30532187   PMID:30580022   PMID:30615908   PMID:30627088   PMID:30649271   PMID:30655507   PMID:30698747  
PMID:30742779   PMID:30824750   PMID:30917317   PMID:30922125   PMID:30936873   PMID:30946837   PMID:30992401   PMID:31108170   PMID:31149632   PMID:31176306   PMID:31182610   PMID:31189975  
PMID:31337711   PMID:31474871   PMID:31534216   PMID:31559673   PMID:31657630   PMID:31675485   PMID:31711918   PMID:31776290   PMID:31846734   PMID:31869387   PMID:31929189   PMID:32199911  
PMID:32226647   PMID:32289320   PMID:32333646   PMID:32381682   PMID:32460513   PMID:32487073   PMID:32510471   PMID:32571841   PMID:32707034   PMID:32937153   PMID:33065020   PMID:33078371  
PMID:33144612   PMID:33316454   PMID:33510451   PMID:33548499   PMID:33567280   PMID:33650028   PMID:33679723   PMID:33684964   PMID:33790284   PMID:33790465   PMID:33821329   PMID:33836079  
PMID:33852855   PMID:33888696   PMID:33941859   PMID:34039610   PMID:34077736   PMID:34145364   PMID:34194038   PMID:34215821   PMID:34302744   PMID:34308664   PMID:34337361   PMID:34343616  
PMID:34413386   PMID:34639172   PMID:34669484   PMID:34699114   PMID:34731602   PMID:34764952   PMID:34861075   PMID:34954109   PMID:35007536   PMID:35011674   PMID:35120589   PMID:35151464  
PMID:35263658   PMID:35281733   PMID:35316097   PMID:35363257   PMID:35568187   PMID:35614477   PMID:35636458   PMID:35717025   PMID:35733193   PMID:36012509   PMID:36071319   PMID:36098746  
PMID:36100039   PMID:36109497   PMID:36111785   PMID:36172380   PMID:36187119   PMID:36261014   PMID:36403974   PMID:36418174   PMID:36657650   PMID:36691038   PMID:36702319   PMID:36717247  
PMID:36766792   PMID:36834731   PMID:36873102   PMID:37039556   PMID:37080971   PMID:37105394   PMID:37463052   PMID:37527657   PMID:37610219   PMID:37688915   PMID:37839992   PMID:37925931  
PMID:38273366  


Genomics

Comparative Map Data
Nr3c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391839,543,598 - 39,652,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1839,543,598 - 39,652,474 (-)EnsemblGRCm39 Ensembl
GRCm381839,410,545 - 39,519,421 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1839,410,545 - 39,519,421 (-)EnsemblGRCm38mm10GRCm38
MGSCv371839,570,199 - 39,646,899 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361839,537,961 - 39,615,820 (-)NCBIMGSCv36mm8
Celera1840,761,405 - 40,838,026 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1821.09NCBI
NR3C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385143,277,931 - 143,435,512 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5143,277,931 - 143,435,512 (-)EnsemblGRCh38hg38GRCh38
GRCh375142,657,496 - 142,815,077 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365142,637,689 - 142,795,270 (-)NCBINCBI36Build 36hg18NCBI36
Build 345142,639,324 - 142,763,087NCBI
Celera5138,738,770 - 138,896,297 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5137,804,733 - 137,962,312 (-)NCBIHuRef
CHM1_15142,091,205 - 142,248,804 (-)NCBICHM1_1
T2T-CHM13v2.05143,809,293 - 143,966,896 (-)NCBIT2T-CHM13v2.0
Nr3c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81831,522,783 - 31,644,508 (-)NCBIGRCr8
mRatBN7.21831,271,681 - 31,393,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1831,271,681 - 31,393,375 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1831,375,854 - 31,463,901 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01832,142,851 - 32,230,932 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01831,471,103 - 31,559,156 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,728,373 - 32,704,022 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,728,373 - 31,749,647 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01832,347,227 - 32,348,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01831,408,742 - 31,442,725 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41832,371,496 - 32,459,145 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11832,406,765 - 32,494,411 (-)NCBI
Celera1830,905,394 - 30,993,522 (-)NCBICelera
RH 3.4 Map18442.9RGD
Cytogenetic Map18p11NCBI
Nr3c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541510,494,640 - 10,586,221 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541510,494,704 - 10,585,778 (+)NCBIChiLan1.0ChiLan1.0
NR3C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24138,522,276 - 138,977,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15136,661,826 - 137,116,821 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05138,634,278 - 139,089,171 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15144,741,452 - 144,865,341 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5144,741,452 - 144,865,269 (-)Ensemblpanpan1.1panPan2
NR3C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,124,568 - 38,242,510 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,123,190 - 38,240,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha235,173,176 - 35,283,390 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0238,573,084 - 38,692,463 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl238,573,084 - 38,690,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1235,654,977 - 35,765,222 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0236,468,553 - 36,579,023 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0237,270,194 - 37,380,458 (-)NCBIUU_Cfam_GSD_1.0
Nr3c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213149,386,116 - 149,482,864 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650410,959,192 - 11,056,856 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650410,960,069 - 11,056,834 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NR3C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2144,822,939 - 144,956,451 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12144,822,937 - 144,956,451 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22151,051,816 - 151,185,046 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NR3C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12345,904,926 - 46,031,804 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2345,904,873 - 46,031,125 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603431,810,840 - 31,935,849 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nr3c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247742,495,304 - 2,602,632 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247742,496,276 - 2,603,894 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nr3c1
3303 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3814
Count of miRNA genes:787
Interacting mature miRNAs:1069
Transcripts:ENSMUST00000025300, ENSMUST00000097592, ENSMUST00000115567, ENSMUST00000115571, ENSMUST00000124115, ENSMUST00000131885, ENSMUST00000150483, ENSMUST00000152853
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse

Markers in Region
X04435  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381839,414,301 - 39,414,401UniSTSGRCm38
MGSCv371839,573,955 - 39,574,055UniSTSGRCm37
Celera1840,765,161 - 40,765,261UniSTS
Cytogenetic Map18B3UniSTS
cM Map1820.0UniSTS
Whitehead_YAC18 UniSTS
D18Mit17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381839,486,861 - 39,487,074UniSTSGRCm38
MGSCv371839,646,515 - 39,646,728UniSTSGRCm37
Celera1840,837,669 - 40,837,855UniSTS
Cytogenetic Map18B3UniSTS
cM Map1820.0UniSTS
Whitehead Genetic1814.2UniSTS
Whitehead_YAC18 UniSTS
Nr3c1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371839,646,560 - 39,646,767UniSTSGRCm37
MGSCv371839,646,000 - 39,646,463UniSTSGRCm37
Celera1840,837,714 - 40,837,894UniSTS
Celera1840,837,154 - 40,837,617UniSTS
Cytogenetic Map18B3UniSTS
cM Map1820.0UniSTS
cM Map1820.0UniSTS
NR3C1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381839,486,346 - 39,486,809UniSTSGRCm38
MGSCv371839,646,000 - 39,646,463UniSTSGRCm37
Celera1840,837,154 - 40,837,617UniSTS
Cytogenetic Map18B3UniSTS
Nr3c1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B3UniSTS
Nr3c1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381839,486,906 - 39,487,113UniSTSGRCm38
MGSCv371839,646,560 - 39,646,767UniSTSGRCm37
Celera1840,837,714 - 40,837,894UniSTS
Cytogenetic Map18B3UniSTS
cM Map1820.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA124418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC007995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC124417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC129913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY232938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN720992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ504162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU118151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU118152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM236293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MG946717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X04435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X13358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X13359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X66367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z97061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000025300   ⟹   ENSMUSP00000025300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,545,040 - 39,622,899 (-)Ensembl
GRCm38.p6 Ensembl1839,411,987 - 39,489,846 (-)Ensembl
RefSeq Acc Id: ENSMUST00000097592   ⟹   ENSMUSP00000095199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,547,535 - 39,620,285 (-)Ensembl
GRCm38.p6 Ensembl1839,414,482 - 39,487,232 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115567   ⟹   ENSMUSP00000111229
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,543,598 - 39,623,727 (-)Ensembl
GRCm38.p6 Ensembl1839,410,545 - 39,490,674 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115571   ⟹   ENSMUSP00000111233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,543,600 - 39,620,298 (-)Ensembl
GRCm38.p6 Ensembl1839,410,547 - 39,487,245 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124115   ⟹   ENSMUSP00000119630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,619,897 - 39,624,354 (-)Ensembl
GRCm38.p6 Ensembl1839,486,844 - 39,491,301 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131885   ⟹   ENSMUSP00000121144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,620,139 - 39,622,336 (-)Ensembl
GRCm38.p6 Ensembl1839,487,086 - 39,489,283 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150483   ⟹   ENSMUSP00000119432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,620,213 - 39,624,352 (-)Ensembl
GRCm38.p6 Ensembl1839,487,160 - 39,491,299 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152853   ⟹   ENSMUSP00000120082
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,557,489 - 39,622,941 (-)Ensembl
GRCm38.p6 Ensembl1839,424,436 - 39,489,888 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237944   ⟹   ENSMUSP00000157832
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1839,620,181 - 39,652,474 (-)Ensembl
GRCm38.p6 Ensembl1839,487,128 - 39,519,421 (-)Ensembl
RefSeq Acc Id: NM_001361209   ⟹   NP_001348138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,598 - 39,623,723 (-)NCBI
GRCm381839,410,545 - 39,490,670 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361210   ⟹   NP_001348139
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,598 - 39,623,966 (-)NCBI
GRCm381839,410,545 - 39,490,913 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361211   ⟹   NP_001348140
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,598 - 39,622,829 (-)NCBI
GRCm381839,410,545 - 39,489,776 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361212   ⟹   NP_001348141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,598 - 39,652,474 (-)NCBI
GRCm381839,410,545 - 39,519,421 (-)NCBI
Sequence:
RefSeq Acc Id: NM_008173   ⟹   NP_032199
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,598 - 39,622,332 (-)NCBI
GRCm381839,410,545 - 39,489,279 (-)NCBI
MGSCv371839,570,199 - 39,646,899 (-)RGD
Celera1840,761,405 - 40,838,026 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525658   ⟹   XP_006525721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,543,610 - 39,623,017 (-)NCBI
GRCm381839,410,557 - 39,490,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525659   ⟹   XP_006525722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,623,859 (-)NCBI
GRCm381839,411,987 - 39,490,744 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525660   ⟹   XP_006525723
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,028 - 39,622,485 (-)NCBI
GRCm381839,412,256 - 39,489,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525661   ⟹   XP_006525724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,028 - 39,624,598 (-)NCBI
GRCm381839,412,256 - 39,491,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525662   ⟹   XP_006525725
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,652,485 (-)NCBI
GRCm381839,411,987 - 39,519,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525663   ⟹   XP_006525726
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,028 - 39,623,538 (-)NCBI
GRCm381839,411,987 - 39,490,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525664   ⟹   XP_006525727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,624,070 (-)NCBI
GRCm381839,411,987 - 39,490,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525665   ⟹   XP_006525728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,028 - 39,622,582 (-)NCBI
GRCm381839,412,256 - 39,489,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250338   ⟹   XP_030106198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,623,011 (-)NCBI
GRCm381839,411,173 - 39,490,169 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250339   ⟹   XP_030106199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,624,598 (-)NCBI
GRCm381839,411,553 - 39,491,917 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160990   ⟹   XP_036016883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391839,545,018 - 39,623,464 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001348138 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348139 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348140 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348141 (Get FASTA)   NCBI Sequence Viewer  
  NP_032199 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525721 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525722 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525723 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525724 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525725 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525726 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525727 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525728 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106198 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106199 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016883 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16462 (Get FASTA)   NCBI Sequence Viewer  
  AAI29913 (Get FASTA)   NCBI Sequence Viewer  
  AAI29914 (Get FASTA)   NCBI Sequence Viewer  
  ABF57998 (Get FASTA)   NCBI Sequence Viewer  
  ABV31979 (Get FASTA)   NCBI Sequence Viewer  
  ABV31980 (Get FASTA)   NCBI Sequence Viewer  
  ADM18962 (Get FASTA)   NCBI Sequence Viewer  
  AXY05355 (Get FASTA)   NCBI Sequence Viewer  
  BAE33113 (Get FASTA)   NCBI Sequence Viewer  
  BAE33674 (Get FASTA)   NCBI Sequence Viewer  
  CAA28031 (Get FASTA)   NCBI Sequence Viewer  
  CAA31738 (Get FASTA)   NCBI Sequence Viewer  
  CAA31739 (Get FASTA)   NCBI Sequence Viewer  
  CAA47010 (Get FASTA)   NCBI Sequence Viewer  
  EDL10061 (Get FASTA)   NCBI Sequence Viewer  
  EDL10062 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000025300
  ENSMUSP00000025300.7
  ENSMUSP00000095199
  ENSMUSP00000095199.3
  ENSMUSP00000111229
  ENSMUSP00000111229.2
  ENSMUSP00000111233
  ENSMUSP00000111233.2
  ENSMUSP00000119432.2
  ENSMUSP00000119630.2
  ENSMUSP00000120082.2
  ENSMUSP00000121144.2
  ENSMUSP00000157832.2
GenBank Protein P06537 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_032199   ⟸   NM_008173
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525725   ⟸   XM_006525662
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525724   ⟸   XM_006525661
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525727   ⟸   XM_006525664
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525722   ⟸   XM_006525659
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525726   ⟸   XM_006525663
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525721   ⟸   XM_006525658
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525728   ⟸   XM_006525665
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525723   ⟸   XM_006525660
- Peptide Label: isoform X1
- UniProtKB: E9PYV1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001348141   ⟸   NM_001361212
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348139   ⟸   NM_001361210
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348138   ⟸   NM_001361209
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001348140   ⟸   NM_001361211
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106198   ⟸   XM_030250338
- Peptide Label: isoform X2
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106199   ⟸   XM_030250339
- Peptide Label: isoform X2
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000119432   ⟸   ENSMUST00000150483
RefSeq Acc Id: ENSMUSP00000157832   ⟸   ENSMUST00000237944
RefSeq Acc Id: ENSMUSP00000119630   ⟸   ENSMUST00000124115
RefSeq Acc Id: ENSMUSP00000120082   ⟸   ENSMUST00000152853
RefSeq Acc Id: ENSMUSP00000121144   ⟸   ENSMUST00000131885
RefSeq Acc Id: ENSMUSP00000111229   ⟸   ENSMUST00000115567
RefSeq Acc Id: ENSMUSP00000111233   ⟸   ENSMUST00000115571
RefSeq Acc Id: ENSMUSP00000025300   ⟸   ENSMUST00000025300
RefSeq Acc Id: ENSMUSP00000095199   ⟸   ENSMUST00000097592
RefSeq Acc Id: XP_036016883   ⟸   XM_036160990
- Peptide Label: isoform X2
- UniProtKB: Q61628 (UniProtKB/Swiss-Prot),   Q3U2M7 (UniProtKB/Swiss-Prot),   Q3U126 (UniProtKB/Swiss-Prot),   Q06VW2 (UniProtKB/Swiss-Prot),   P06537 (UniProtKB/Swiss-Prot),   E9PYV1 (UniProtKB/Swiss-Prot),   E9PUR6 (UniProtKB/Swiss-Prot),   E0ZPU5 (UniProtKB/Swiss-Prot),   Q61629 (UniProtKB/Swiss-Prot)
Protein Domains
NR LBD   Nuclear receptor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P06537-F1-model_v2 AlphaFold P06537 1-792 view protein structure

Promoters
RGD ID:13677656
Promoter ID:EPDNEW_M22977
Type:initiation region
Name:Nr3c1_2
Description:Mus musculus nuclear receptor subfamily 3, group C, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22978  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381839,489,805 - 39,489,865EPDNEW
RGD ID:13677658
Promoter ID:EPDNEW_M22978
Type:initiation region
Name:Nr3c1_1
Description:Mus musculus nuclear receptor subfamily 3, group C, member 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22977  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381839,490,682 - 39,490,742EPDNEW
RGD ID:6829416
Promoter ID:MM_KWN:25118
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver
Transcripts:ENSMUST00000115569,   NM_008173,   UC008ESY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361839,645,791 - 39,646,702 (-)MPROMDB
RGD ID:6829418
Promoter ID:MM_KWN:25119
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   Spleen
Transcripts:ENSMUST00000025300,   OTTMUST00000058604,   UC008ESZ.1,   UC008ETA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361839,648,791 - 39,650,147 (-)MPROMDB
RGD ID:6829417
Promoter ID:MM_KWN:25120
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000115567,   OTTMUST00000058602,   OTTMUST00000058603,   UC008ETB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361839,650,226 - 39,651,452 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95824 AgrOrtholog
Ensembl Genes ENSMUSG00000024431 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000025300 ENTREZGENE
  ENSMUST00000025300.13 UniProtKB/Swiss-Prot
  ENSMUST00000097592 ENTREZGENE
  ENSMUST00000097592.9 UniProtKB/Swiss-Prot
  ENSMUST00000115567 ENTREZGENE
  ENSMUST00000115567.8 UniProtKB/Swiss-Prot
  ENSMUST00000115571 ENTREZGENE
  ENSMUST00000115571.8 UniProtKB/Swiss-Prot
  ENSMUST00000124115.2 UniProtKB/TrEMBL
  ENSMUST00000131885.2 UniProtKB/TrEMBL
  ENSMUST00000150483.2 UniProtKB/TrEMBL
  ENSMUST00000152853.2 UniProtKB/TrEMBL
  ENSMUST00000237944.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.565.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.50.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Glcrtcd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NHR-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucl_hrmn_rcpt_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nuclear_hrmn_rcpt UniProtKB/Swiss-Prot
  Znf_hrmn_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_NHR/GATA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14815 UniProtKB/Swiss-Prot
MGD MGI:95824 ENTREZGENE
NCBI Gene 14815 ENTREZGENE
PANTHER GLUCOCORTICOID RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KNIRPS-RELATED PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GCR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hormone_recep UniProtKB/Swiss-Prot
  zf-C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB NR3C1 RGD
PhenoGen Nr3c1 PhenoGen
PRINTS GLCORTICOIDR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STRDHORMONER UniProtKB/Swiss-Prot
  STROIDFINGER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NR_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR_REC_DBD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HOLI UniProtKB/Swiss-Prot
  ZnF_C4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48508 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A385HBV1_MOUSE UniProtKB/TrEMBL
  A0A494B9W1_MOUSE UniProtKB/TrEMBL
  D3YTK8_MOUSE UniProtKB/TrEMBL
  D3Z280_MOUSE UniProtKB/TrEMBL
  E0ZPU5 ENTREZGENE
  E9PUR6 ENTREZGENE
  E9PYV1 ENTREZGENE
  E9Q310_MOUSE UniProtKB/TrEMBL
  E9Q8A6_MOUSE UniProtKB/TrEMBL
  GCR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q05DD1_MOUSE UniProtKB/TrEMBL
  Q06VW2 ENTREZGENE
  Q3U126 ENTREZGENE
  Q3U2M7 ENTREZGENE
  Q61628 ENTREZGENE
  Q61629 ENTREZGENE
UniProt Secondary E0ZPU5 UniProtKB/Swiss-Prot
  E9PUR6 UniProtKB/Swiss-Prot
  E9PYV1 UniProtKB/Swiss-Prot
  Q06VW2 UniProtKB/Swiss-Prot
  Q3U126 UniProtKB/Swiss-Prot
  Q3U2M7 UniProtKB/Swiss-Prot
  Q61628 UniProtKB/Swiss-Prot
  Q61629 UniProtKB/Swiss-Prot