Fgf1 (fibroblast growth factor 1) - Rat Genome Database

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Gene: Fgf1 (fibroblast growth factor 1) Mus musculus
Analyze
Symbol: Fgf1
Name: fibroblast growth factor 1
RGD ID: 10577
MGI Page MGI
Description: Predicted to enable several functions, including Hsp70 protein binding activity; S100 protein binding activity; and signaling receptor binding activity. Acts upstream of or within several processes, including organ induction; positive regulation of epithelial cell proliferation; and positive regulation of nitrogen compound metabolic process. Located in extracellular matrix and extracellular space. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in brain ischemia; cleft lip; myocardial infarction; schizophrenia; and urinary bladder cancer. Orthologous to human FGF1 (fibroblast growth factor 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: acidic fibroblast growth factor; aFGF; Dffrx; Fam; Fgf; Fgf-1; Fgf2b; Fgfa; fibroblast growth factor 1 (acidic); fibroblast growth factor 2b; HBGF-1; heparin-binding growth factor 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,971,725 - 39,062,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,971,726 - 39,062,525 (-)EnsemblGRCm39 Ensembl
GRCm381838,838,672 - 38,929,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,838,673 - 38,929,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,998,327 - 39,078,353 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,965,154 - 39,044,673 (-)NCBIMGSCv36mm8
Celera1840,186,840 - 40,265,902 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
(R)-noradrenaline  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
2-tert-butylhydroquinone  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
9-cis-retinoic acid  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-4-oxoretinoic acid  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-hexachlorocyclohexane  (ISO)
amlexanox  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimycin A  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
aspartame  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
Calcimycin  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP,ISO)
captan  (EXP)
carbachol  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorogenic acid  (ISO)
chloroquine  (ISO)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (EXP,ISO)
cyproconazole  (EXP)
D-glucose  (EXP,ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (EXP)
diclofenac  (EXP)
dieldrin  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
ethanolamine  (ISO)
ethylparaben  (ISO)
fipronil  (ISO)
fluoxetine  (ISO)
flutamide  (ISO)
folpet  (EXP)
fucoxanthin  (EXP)
fumaraldehyde  (EXP)
furan  (ISO)
gamma-aminobutyric acid  (ISO)
gamma-tocopherol  (ISO)
genistein  (ISO)
glucose  (EXP,ISO)
glutathione  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
heparan sulfate  (ISO)
heparin  (EXP,ISO)
histamine  (ISO)
hydrogen peroxide  (EXP,ISO)
hydroxytyrosol  (ISO)
indole-3-methanol  (ISO)
isobutyl nitrite  (EXP)
isotretinoin  (ISO)
KT 5720  (ISO)
kynurenic acid  (EXP,ISO)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
leptomycin B  (EXP)
lipopolysaccharide  (EXP)
LY294002  (EXP,ISO)
metformin  (EXP)
methapyrilene  (ISO)
methidathion  (EXP)
methotrexate  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (EXP,ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
nitric oxide  (ISO)
nitrofen  (ISO)
Osajin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP)
PD-166866  (ISO)
PD173074  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP,ISO)
phorbol 13-acetate 12-myristate  (EXP)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
Pomiferin  (ISO)
potassium chloride  (ISO)
potassium dichromate  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP,ISO)
propiconazole  (EXP)
propranolol  (ISO)
puerarin  (ISO)
quercetin  (ISO)
quinolinic acid  (EXP,ISO)
rebaudioside A  (ISO)
resveratrol  (ISO)
rimonabant  (EXP)
Rosavin  (ISO)
rotenone  (EXP)
rottlerin  (EXP)
SB 203580  (ISO)
SB 431542  (ISO)
serotonin  (ISO)
sildenafil citrate  (ISO)
silicon dioxide  (ISO)
sirolimus  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (EXP)
steviol  (ISO)
stevioside  (ISO)
succimer  (EXP)
sulforaphane  (ISO)
tanespimycin  (ISO)
tetrachloromethane  (EXP,ISO)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (ISO)
thyroxine  (EXP)
titanium dioxide  (EXP)
tocopherol  (ISO)
Triptolide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
wortmannin  (EXP,ISO)
XAV939  (ISO)
zinc atom  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Spinal cord repair in adult paraplegic rats: partial restoration of hind limb function. Cheng H, etal., Science. 1996 Jul 26;273(5274):510-3.
2. Increased immunodetection of acidic fibroblast growth factor in bladder cancer, detectable in urine. Chopin DK, etal., J Urol. 1993 Oct;150(4):1126-30.
3. Controlled delivery of fibroblast growth factor-1 and neuregulin-1 from biodegradable microparticles promotes cardiac repair in a rat myocardial infarction model through activation of endogenous regeneration. Formiga FR, etal., J Control Release. 2014 Jan 10;173:132-9. doi: 10.1016/j.jconrel.2013.10.034. Epub 2013 Nov 5.
4. Expressions of the fibroblast growth factor family (FGF-1, -2 and -4) mRNA in endometrial cancers. Fujimoto J, etal., Tumour Biol. 1996;17(4):226-33.
5. Molecular profiling of cervical cancer progression. Hagemann T, etal., Br J Cancer. 2007 Jan 29;96(2):321-8.
6. An association screen of myelin-related genes implicates the chromosome 22q11 PIK4CA gene in schizophrenia. Jungerius BJ, etal., Mol Psychiatry. 2008 Nov;13(11):1060-8. Epub 2007 Sep 25.
7. Expression of acidic fibroblast growth factor and basic fibroblast growth factor in nasal polyps. Kim HJ, etal., Acta Otolaryngol. 2006 Jun;126(6):600-5.
8. Improvement of gait patterns in step-trained, complete spinal cord-transected rats treated with a peripheral nerve graft and acidic fibroblast growth factor. Lee YS, etal., Exp Neurol. 2010 Aug;224(2):429-37. Epub 2010 May 19.
9. Increased acidic fibroblast growth factor concentrations in the serum and cerebrospinal fluid of patients with Alzheimer's disease. Mashayekhi F, etal., J Clin Neurosci. 2010 Mar;17(3):357-9. Epub 2010 Jan 15.
10. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14. Investigation of FGF1 and FGFR gene polymorphisms in a group of Iranian patients with nonsyndromic cleft lip with or without cleft palate. Rafiqdoost Z, etal., Int J Pediatr Otorhinolaryngol. 2014 May;78(5):731-6. doi: 10.1016/j.ijporl.2014.01.024. Epub 2014 Jan 27.
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Assessment of the VEGF, bFGF, aFGF and IL8 angiogenic activity in urinary bladder carcinoma, using the mice cutaneous angiogenesis test. Rogala E, etal., Anticancer Res. 2001 Nov-Dec;21(6B):4259-63.
18. Transgenic expression of human FGF-1 protects against hypoxic-ischemic injury in perinatal brain by intervening at caspase-XIAP signaling cascades. Russell JC, etal., Neurobiol Dis. 2006 Jun;22(3):677-90. Epub 2006 Apr 24.
19. Cloning, expression, and chromosomal localization of a novel cadherin-related protein, protocadherin-3. Sago H, etal., Genomics 1995 Oct 10;29(3):631-40.
20. Involvement of acidic fibroblast growth factor in spinal cord injury repair processes revealed by a proteomics approach. Tsai MC, etal., Mol Cell Proteomics. 2008 Sep;7(9):1668-87. Epub 2008 May 14.
21. Mutations that cause osteoglophonic dysplasia define novel roles for FGFR1 in bone elongation. White KE, etal., Am J Hum Genet. 2005 Feb;76(2):361-7. Epub 2004 Dec 28.
22. Fibroblast growth factors (FGF) in human myometrium and uterine leiomyomas in various stages of tumour growth. Wolanska M and Bankowski E, Biochimie. 2006 Feb;88(2):141-6. Epub 2005 Aug 22.
23. Acidic fibroblast growth factor for repair of human spinal cord injury: a clinical trial. Wu JC, etal., J Neurosurg Spine. 2011 Sep;15(3):216-27. Epub 2011 Jun 10.
24. Protective effects of mutant of acidic fibroblast growth factor against cerebral ischaemia-reperfusion injury in rats. Xu H, etal., Injury. 2009 Sep;40(9):963-7. Epub 2009 Jun 3.
25. [Expression of aFGF and bFGF in ovarian cancer and their effect on ovarian cancer cell proliferation]. Zhang Y, etal., Ai Zheng. 2003 Nov;22(11):1162-5.
Additional References at PubMed
PMID:1280156   PMID:1354640   PMID:1354644   PMID:1528849   PMID:1543906   PMID:1701865   PMID:2071145   PMID:2318343   PMID:3523756   PMID:7499532   PMID:7506544   PMID:7510692  
PMID:7539358   PMID:7590736   PMID:7682010   PMID:7693700   PMID:7730342   PMID:7873879   PMID:7930669   PMID:8054975   PMID:8094372   PMID:8170478   PMID:8186145   PMID:8407940  
PMID:8575338   PMID:8585128   PMID:8601591   PMID:8661157   PMID:8835096   PMID:8854867   PMID:8870641   PMID:8883961   PMID:8884266   PMID:8889548   PMID:8898217   PMID:8939980  
PMID:8972905   PMID:8973357   PMID:9056643   PMID:9385055   PMID:9417917   PMID:9428423   PMID:9461194   PMID:9486824   PMID:9598344   PMID:9640334   PMID:9740653   PMID:10207015  
PMID:10349636   PMID:10373120   PMID:10440569   PMID:10542131   PMID:10545953   PMID:10688672   PMID:10704889   PMID:10903182   PMID:10974033   PMID:11042159   PMID:11076861   PMID:11110696  
PMID:11130978   PMID:11165488   PMID:11175337   PMID:11217851   PMID:11335076   PMID:11401444   PMID:11690635   PMID:11698278   PMID:11731698   PMID:11782400   PMID:11900978   PMID:12095987  
PMID:12121735   PMID:12128203   PMID:12192060   PMID:12421715   PMID:12466851   PMID:12477932   PMID:12666204   PMID:14507672   PMID:14517998   PMID:14559220   PMID:14592461   PMID:14610273  
PMID:14645517   PMID:14681479   PMID:15010206   PMID:15080504   PMID:15108315   PMID:15199124   PMID:15306695   PMID:15314170   PMID:15381701   PMID:15483628   PMID:15489334   PMID:15574884  
PMID:15576401   PMID:15607950   PMID:15767668   PMID:15800000   PMID:15830353   PMID:15963767   PMID:16015590   PMID:16123981   PMID:16141072   PMID:16141073   PMID:16263090   PMID:16439359  
PMID:16495214   PMID:16602821   PMID:16728399   PMID:16818445   PMID:16929488   PMID:16930531   PMID:17027650   PMID:17090159   PMID:17187775   PMID:17196193   PMID:17481602   PMID:17548887  
PMID:17583691   PMID:17616529   PMID:17643421   PMID:17660197   PMID:17807638   PMID:17852407   PMID:17963525   PMID:18058912   PMID:18281280   PMID:18287559   PMID:18411303   PMID:18505824  
PMID:18694942   PMID:18718461   PMID:18784255   PMID:18799693   PMID:19168680   PMID:19233122   PMID:19408015   PMID:19411759   PMID:19544582   PMID:19561198   PMID:19564414   PMID:19574212  
PMID:20040496   PMID:20189986   PMID:20299672   PMID:20348033   PMID:20568245   PMID:20883684   PMID:21119013   PMID:21223962   PMID:21223966   PMID:21267068   PMID:21677750   PMID:21731673  
PMID:21873635   PMID:21876757   PMID:22323595   PMID:22396766   PMID:22522926   PMID:22606265   PMID:22643896   PMID:22682244   PMID:23133671   PMID:23293024   PMID:23322300   PMID:24198358  
PMID:24569637   PMID:24595027   PMID:24952961   PMID:25043058   PMID:25139991   PMID:25209997   PMID:25217174   PMID:25589163   PMID:25685806   PMID:25721301   PMID:26748348   PMID:26847131  
PMID:26881702   PMID:27046834   PMID:27443835   PMID:27638903   PMID:27770432   PMID:27922003   PMID:28031461   PMID:28076781   PMID:28502041   PMID:28655615   PMID:28813681   PMID:28818950  
PMID:28939119   PMID:29031500   PMID:29048426   PMID:29268138   PMID:29360039   PMID:29845277   PMID:30063763   PMID:30320493   PMID:30352686   PMID:30728831   PMID:30783098   PMID:30972920  
PMID:31924792   PMID:32094117   PMID:32325033   PMID:32554499   PMID:32817243   PMID:33020467   PMID:33762571   PMID:33994863   PMID:34358309   PMID:34831221   PMID:34929174   PMID:34990928  
PMID:35020897   PMID:36161959   PMID:36225175   PMID:36625595   PMID:37608351   PMID:37948457   PMID:38301966  


Genomics

Comparative Map Data
Fgf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,971,725 - 39,062,532 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,971,726 - 39,062,525 (-)EnsemblGRCm39 Ensembl
GRCm381838,838,672 - 38,929,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,838,673 - 38,929,472 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,998,327 - 39,078,353 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,965,154 - 39,044,673 (-)NCBIMGSCv36mm8
Celera1840,186,840 - 40,265,902 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.74NCBI
FGF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,592,178 - 142,698,070 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5142,592,178 - 142,698,070 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,971,743 - 142,077,635 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,953,306 - 142,045,812 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,953,306 - 142,045,812NCBI
Celera5138,053,068 - 138,158,948 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5137,119,474 - 137,224,982 (-)NCBIHuRef
CHM1_15141,405,414 - 141,511,305 (-)NCBICHM1_1
T2T-CHM13v2.05143,123,428 - 143,229,306 (-)NCBIT2T-CHM13v2.0
Fgf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,937,670 - 31,023,786 (-)NCBIGRCr8
mRatBN7.21830,686,555 - 30,772,667 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,686,581 - 30,772,357 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,793,473 - 30,814,440 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,554,441 - 31,575,416 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,888,710 - 30,909,676 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01832,273,830 - 32,359,831 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1832,273,770 - 32,359,824 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,951,411 - 32,037,426 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41831,785,480 - 31,806,452 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11831,815,644 - 31,836,615 (-)NCBI
Celera1830,325,334 - 30,346,306 (-)NCBICelera
RH 3.4 Map18442.3RGD
Cytogenetic Map18p11NCBI
Fgf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,151,266 - 11,247,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,151,330 - 11,245,554 (+)NCBIChiLan1.0ChiLan1.0
FGF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,837,020 - 137,929,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,976,573 - 136,069,372 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,949,100 - 138,054,553 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15144,056,387 - 144,161,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5144,056,387 - 144,078,001 (-)Ensemblpanpan1.1panPan2
FGF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1237,467,431 - 37,554,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl237,470,985 - 37,554,619 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha234,520,400 - 34,607,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,924,029 - 38,010,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,924,031 - 38,011,099 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1235,002,929 - 35,089,106 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,815,172 - 35,902,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,617,132 - 36,703,569 (-)NCBIUU_Cfam_GSD_1.0
Fgf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,016,744 - 150,111,186 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650411,590,637 - 11,685,194 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650411,590,687 - 11,684,410 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2144,133,392 - 144,241,323 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12144,133,846 - 144,241,345 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22150,317,372 - 150,435,039 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12345,220,827 - 45,328,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2345,220,800 - 45,328,328 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603432,516,959 - 32,624,610 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,779,170 - 1,867,300 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,779,168 - 1,867,321 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fgf1
3171 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3229
Count of miRNA genes:773
Interacting mature miRNAs:976
Transcripts:ENSMUST00000040647, ENSMUST00000115582, ENSMUST00000117566, ENSMUST00000131348, ENSMUST00000134864, ENSMUST00000139972, ENSMUST00000147607
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226723Tibw9_mtibia width 9, proximal, 16 week (mouse)18320000060933072Mouse
1558849W3q15_mweight 3 weeks QTL 15 (mouse)Not determined18504111961272643Mouse
1558873Hrtfm7_mheart failure modifier 7 (mouse)Not determined18808696442087106Mouse
13504732Cath6_mcarotid atherosclerosis 6 (mouse)181363712647637126Mouse
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
1300994Pvcan3_mprotection against vaginal candidiasis 3 (mouse)Not determined181619964050199776Mouse
1301307Phospq1_mphospholipid QTL 1 (mouse)Not determined181813970452139859Mouse
1300638Im7_mimmunoregulatory 7 (mouse)Not determined181901887453018992Mouse
1558743Kcal1_mkilocalorie 1 (mouse)Not determined181901887453018992Mouse
11532709Sluc41_msusceptibility to lung cancer 41 (mouse)182095369457590708Mouse
13463476Hctq8_mhematocrit QTL 8 (mouse)182121758055217727Mouse
1300877Adip8_madiposity 8 (mouse)Not determined182261991456620127Mouse
11532710Sluc41a_msusceptibility to lung cancer 41a (mouse)182261991456620127Mouse
11532715Sluc41b_msusceptibility to lung cancer 41b (mouse)182261991456620127Mouse
11532716Sluc41c_msusceptibility to lung cancer 41c (mouse)182261991456620127Mouse
1301570Sluc14_msusceptibility to lung cancer 14 (mouse)Not determined182261991456620127Mouse
4142031Moen1_mmodifier of engrailed QTL 1 (mouse)Not determined182411556058115730Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12904950Smmq3_msoleus muscle mass QTL 3 (mouse)182605687560056875Mouse
25823167Hrsq5_mhost response to SARS QTL 5, D3% weight (mouse)182724111558827077Mouse
25823171Hrsq10_mhost response to SARS QTL 10, D4% weight (mouse)182724111558827077Mouse
25823174Hrsq11_mhost response to SARS QTL 11, log titer (mouse)182724111558827077Mouse
1301400Lmr13_mleishmaniasis resistance 13 (mouse)Not determined182810938062109518Mouse
4141857Mhysq5_mmale hybrid sterility QTL 5 (mouse)Not determined2813060462130739Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
11041903Lmr27_mleishmaniasis resistance 27 (mouse)183618756745109518Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse

Markers in Region
AU015741  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,872,276 - 38,872,514UniSTSGRCm38
MGSCv371839,031,930 - 39,032,168UniSTSGRCm37
Celera1840,219,500 - 40,219,738UniSTS
Cytogenetic Map18B3UniSTS
cM Map1819.0UniSTS
Whitehead/MRC_RH18566.6UniSTS
AF067190  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,840,541 - 38,840,673UniSTSGRCm38
MGSCv371839,000,195 - 39,000,327UniSTSGRCm37
Celera1840,188,742 - 40,188,874UniSTS
Cytogenetic Map18B3UniSTS
cM Map1819.0UniSTS
Whitehead/MRC_RH18561.78UniSTS
PMC135637P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,840,853 - 38,841,097UniSTSGRCm38
MGSCv371839,000,507 - 39,000,751UniSTSGRCm37
Celera1840,189,054 - 40,189,298UniSTS
Cytogenetic Map18B3UniSTS
cM Map1819.0UniSTS
stSG622867  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,859,026 - 38,860,362UniSTSGRCm38
MGSCv371839,018,680 - 39,020,016UniSTSGRCm37
Celera1840,206,394 - 40,207,730UniSTS
Cytogenetic Map18B3UniSTS
cM Map1819.0UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,840,239 - 38,841,186UniSTSGRCm38
MGSCv371838,999,893 - 39,000,840UniSTSGRCm37
Celera1840,188,440 - 40,189,387UniSTS
Cytogenetic Map18B3UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381838,840,250 - 38,840,493UniSTSGRCm38
MGSCv371838,999,904 - 39,000,147UniSTSGRCm37
Celera1840,188,451 - 40,188,694UniSTS
Cytogenetic Map18B3UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B3UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B3UniSTS
cM Map1819.0UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B3UniSTS
Fgf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18B3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017317832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF012926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF067190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF067191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH006762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR130353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M30641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U67610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000040647   ⟹   ENSMUSP00000045710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,971,726 - 39,051,824 (-)Ensembl
GRCm38.p6 Ensembl1838,838,673 - 38,918,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000115582   ⟹   ENSMUSP00000111245
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,973,230 - 38,999,800 (-)Ensembl
GRCm38.p6 Ensembl1838,840,177 - 38,866,747 (-)Ensembl
RefSeq Acc Id: ENSMUST00000117566   ⟹   ENSMUSP00000113292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,974,960 - 38,991,801 (-)Ensembl
GRCm38.p6 Ensembl1838,841,907 - 38,858,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131348   ⟹   ENSMUSP00000123293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,971,728 - 39,062,457 (-)Ensembl
GRCm38.p6 Ensembl1838,838,675 - 38,929,404 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134864   ⟹   ENSMUSP00000122105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,991,621 - 39,062,210 (-)Ensembl
GRCm38.p6 Ensembl1838,858,568 - 38,929,157 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139972   ⟹   ENSMUSP00000122390
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,980,137 - 38,999,185 (-)Ensembl
GRCm38.p6 Ensembl1838,847,084 - 38,866,132 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,980,178 - 38,991,914 (-)Ensembl
GRCm38.p6 Ensembl1838,847,125 - 38,858,861 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235922   ⟹   ENSMUSP00000157856
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,979,630 - 39,062,525 (-)Ensembl
GRCm38.p6 Ensembl1838,846,577 - 38,929,472 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236060   ⟹   ENSMUSP00000158462
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,979,630 - 38,999,800 (-)Ensembl
GRCm38.p6 Ensembl1838,846,577 - 38,866,747 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236630   ⟹   ENSMUSP00000157968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,974,952 - 39,000,056 (-)Ensembl
GRCm38.p6 Ensembl1838,841,899 - 38,867,003 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237356   ⟹   ENSMUSP00000157389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1838,979,630 - 39,000,056 (-)Ensembl
GRCm38.p6 Ensembl1838,846,577 - 38,867,003 (-)Ensembl
RefSeq Acc Id: NM_010197   ⟹   NP_034327
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,726 - 39,051,752 (-)NCBI
GRCm381838,838,673 - 38,918,699 (-)NCBI
MGSCv371838,998,327 - 39,078,353 (-)RGD
Celera1840,186,840 - 40,265,902 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525641   ⟹   XP_006525704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 38,999,804 (-)NCBI
GRCm381838,838,672 - 38,866,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525642   ⟹   XP_006525705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 38,999,806 (-)NCBI
GRCm381838,838,672 - 38,866,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525644   ⟹   XP_006525707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,062,523 (-)NCBI
GRCm381838,838,672 - 38,929,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525645   ⟹   XP_006525708
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 38,999,804 (-)NCBI
GRCm381838,838,672 - 38,866,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525647   ⟹   XP_006525710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,062,523 (-)NCBI
GRCm381838,838,672 - 38,929,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525648   ⟹   XP_006525711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,014,722 (-)NCBI
GRCm381838,838,672 - 38,881,680 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006525649   ⟹   XP_006525712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,013,309 (-)NCBI
GRCm381838,838,672 - 38,875,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246841   ⟹   XP_011245143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,013,309 (-)NCBI
GRCm381838,838,672 - 38,875,057 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246842   ⟹   XP_011245144
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,051,979 (-)NCBI
GRCm381838,838,672 - 38,918,928 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246843   ⟹   XP_011245145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,052,073 (-)NCBI
GRCm381838,838,672 - 38,919,020 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317830   ⟹   XP_017173319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,052,034 (-)NCBI
GRCm381838,838,672 - 38,918,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317831   ⟹   XP_017173320
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,062,523 (-)NCBI
GRCm381838,838,672 - 38,929,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017317832   ⟹   XP_017173321
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,987,397 - 38,999,812 (-)NCBI
GRCm381838,854,344 - 38,866,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160985   ⟹   XP_036016878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,062,523 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160986   ⟹   XP_036016879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,043,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160987   ⟹   XP_036016880
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,971,725 - 39,039,495 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160988   ⟹   XP_036016881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391838,987,397 - 39,062,532 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_034327 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525704 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525705 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525707 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525708 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525710 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525711 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525712 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245143 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245144 (Get FASTA)   NCBI Sequence Viewer  
  XP_011245145 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173319 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173320 (Get FASTA)   NCBI Sequence Viewer  
  XP_017173321 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016878 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016879 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016880 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016881 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37618 (Get FASTA)   NCBI Sequence Viewer  
  AAB94020 (Get FASTA)   NCBI Sequence Viewer  
  AAC52907 (Get FASTA)   NCBI Sequence Viewer  
  AAC52969 (Get FASTA)   NCBI Sequence Viewer  
  AAD15898 (Get FASTA)   NCBI Sequence Viewer  
  AAH37601 (Get FASTA)   NCBI Sequence Viewer  
  BAC29035 (Get FASTA)   NCBI Sequence Viewer  
  EDL10065 (Get FASTA)   NCBI Sequence Viewer  
  EDL10066 (Get FASTA)   NCBI Sequence Viewer  
  EDL10067 (Get FASTA)   NCBI Sequence Viewer  
  EDL10068 (Get FASTA)   NCBI Sequence Viewer  
  EDL10069 (Get FASTA)   NCBI Sequence Viewer  
  EDL10070 (Get FASTA)   NCBI Sequence Viewer  
  EDL10071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000045710
  ENSMUSP00000045710.5
  ENSMUSP00000111245
  ENSMUSP00000111245.2
  ENSMUSP00000113292.2
  ENSMUSP00000122105.2
  ENSMUSP00000122390.2
  ENSMUSP00000123293
  ENSMUSP00000123293.2
  ENSMUSP00000157389.2
  ENSMUSP00000157856.2
  ENSMUSP00000157968
  ENSMUSP00000157968.2
  ENSMUSP00000158462.2
GenBank Protein P61148 (Get FASTA)   NCBI Sequence Viewer  
  VDK10933 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_034327   ⟸   NM_010197
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525710   ⟸   XM_006525647
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525707   ⟸   XM_006525644
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525711   ⟸   XM_006525648
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525712   ⟸   XM_006525649
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006525705   ⟸   XM_006525642
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006525704   ⟸   XM_006525641
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006525708   ⟸   XM_006525645
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245145   ⟸   XM_011246843
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245144   ⟸   XM_011246842
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011245143   ⟸   XM_011246841
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017173320   ⟸   XM_017317831
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017173319   ⟸   XM_017317830
- Peptide Label: isoform X4
- UniProtKB: P10935 (UniProtKB/Swiss-Prot),   P61148 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173321   ⟸   XM_017317832
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSMUSP00000122390   ⟸   ENSMUST00000139972
RefSeq Acc Id: ENSMUSP00000157389   ⟸   ENSMUST00000237356
RefSeq Acc Id: ENSMUSP00000157968   ⟸   ENSMUST00000236630
RefSeq Acc Id: ENSMUSP00000158462   ⟸   ENSMUST00000236060
RefSeq Acc Id: ENSMUSP00000045710   ⟸   ENSMUST00000040647
RefSeq Acc Id: ENSMUSP00000123293   ⟸   ENSMUST00000131348
RefSeq Acc Id: ENSMUSP00000111245   ⟸   ENSMUST00000115582
RefSeq Acc Id: ENSMUSP00000122105   ⟸   ENSMUST00000134864
RefSeq Acc Id: ENSMUSP00000157856   ⟸   ENSMUST00000235922
RefSeq Acc Id: ENSMUSP00000113292   ⟸   ENSMUST00000117566
RefSeq Acc Id: XP_036016878   ⟸   XM_036160985
- Peptide Label: isoform X4
- UniProtKB: P61148 (UniProtKB/Swiss-Prot),   P10935 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016879   ⟸   XM_036160986
- Peptide Label: isoform X4
- UniProtKB: P61148 (UniProtKB/Swiss-Prot),   P10935 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016880   ⟸   XM_036160987
- Peptide Label: isoform X4
- UniProtKB: P61148 (UniProtKB/Swiss-Prot),   P10935 (UniProtKB/Swiss-Prot),   Q6ZWS1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016881   ⟸   XM_036160988
- Peptide Label: isoform X7
- UniProtKB: D6RCX9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P61148-F1-model_v2 AlphaFold P61148 1-155 view protein structure

Promoters
RGD ID:13677642
Promoter ID:EPDNEW_M22970
Type:single initiation site
Name:Fgf1_3
Description:Mus musculus fibroblast growth factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22971  EPDNEW_M22972  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381838,841,996 - 38,842,056EPDNEW
RGD ID:13677644
Promoter ID:EPDNEW_M22971
Type:initiation region
Name:Fgf1_1
Description:Mus musculus fibroblast growth factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22970  EPDNEW_M22972  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381838,918,649 - 38,918,709EPDNEW
RGD ID:13677646
Promoter ID:EPDNEW_M22972
Type:multiple initiation site
Name:Fgf1_2
Description:Mus musculus fibroblast growth factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M22970  EPDNEW_M22971  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381838,929,472 - 38,929,532EPDNEW
RGD ID:6829237
Promoter ID:MM_KWN:25102
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000048209,   UC008ESN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361839,026,236 - 39,026,736 (-)MPROMDB
RGD ID:6829236
Promoter ID:MM_KWN:25104
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000048206
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361839,078,031 - 39,079,282 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95515 AgrOrtholog
Ensembl Genes ENSMUSG00000036585 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000040647 ENTREZGENE
  ENSMUST00000040647.11 UniProtKB/Swiss-Prot
  ENSMUST00000115582 ENTREZGENE
  ENSMUST00000115582.8 UniProtKB/Swiss-Prot
  ENSMUST00000117566.8 UniProtKB/TrEMBL
  ENSMUST00000131348 ENTREZGENE
  ENSMUST00000131348.8 UniProtKB/TrEMBL
  ENSMUST00000134864.2 UniProtKB/TrEMBL
  ENSMUST00000139972.2 UniProtKB/TrEMBL
  ENSMUST00000235922.2 UniProtKB/TrEMBL
  ENSMUST00000236060.2 UniProtKB/TrEMBL
  ENSMUST00000236630 ENTREZGENE
  ENSMUST00000236630.2 UniProtKB/Swiss-Prot
  ENSMUST00000237356.2 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.20.90.30 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL1/FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14164 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95515 ENTREZGENE
NCBI Gene 14164 ENTREZGENE
PANTHER PTHR11486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11486:SF86 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fgf1 PhenoGen
PRINTS HBGFFGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL1HBGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BBG9_MOUSE UniProtKB/TrEMBL
  D3Z192_MOUSE UniProtKB/TrEMBL
  D3Z6E2_MOUSE UniProtKB/TrEMBL
  D3Z6H1_MOUSE UniProtKB/TrEMBL
  D6RCX9 ENTREZGENE, UniProtKB/TrEMBL
  FGF1_MOUSE UniProtKB/Swiss-Prot
  O54837_MOUSE UniProtKB/TrEMBL
  P10935 ENTREZGENE
  P61148 ENTREZGENE
  Q6ZWS1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P10935 UniProtKB/Swiss-Prot