Adarb1 (adenosine deaminase, RNA-specific, B1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Adarb1 (adenosine deaminase, RNA-specific, B1) Mus musculus
Analyze
Symbol: Adarb1
Name: adenosine deaminase, RNA-specific, B1
RGD ID: 10082
MGI Page MGI
Description: Predicted to enable adenosine deaminase activity; double-stranded RNA binding activity; and identical protein binding activity. Involved in adenosine to inosine editing. Acts upstream of or within several processes, including motor neuron apoptotic process; nerve development; and spinal cord ventral commissure morphogenesis. Located in nucleus. Is expressed in several structures, including arterial blood vessel; brain; genitourinary system; heart; and sensory organ. Used to study amyotrophic lateral sclerosis. Orthologous to human ADARB1 (adenosine deaminase RNA specific B1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 1700057H01Rik; AD; Adar2; AW124433; AW558573; BB220382; D10Bwg0447e; double-stranded RNA-specific editase 1; dsRNA adenosine deaminase; RED; Red1; RNA-editing deaminase 1; RNA-editing enzyme 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,126,561 - 77,254,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,126,560 - 77,254,104 (-)EnsemblGRCm39 Ensembl
GRCm381077,290,727 - 77,418,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,290,726 - 77,418,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,753,472 - 76,881,018 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361076,734,449 - 76,861,989 (-)NCBIMGSCv36mm8
Celera1078,334,514 - 78,460,578 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
17alpha-ethynylestradiol  (EXP)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-Dioxo-6-nitro-7-sulfamoylbenzo(f)quinoxaline  (ISO)
2,4-dinitrobenzenesulfonic acid  (EXP)
2,6-dinitrotoluene  (ISO)
2-methylcholine  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alachlor  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arachidonic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
C60 fullerene  (ISO)
caffeine  (ISO)
calciol  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chlormequat chloride  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (EXP)
disulfiram  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
fenvalerate  (ISO)
fluoxetine  (EXP)
folic acid  (EXP)
FR900359  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxyacetic acid  (ISO)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
Monobutylphthalate  (ISO)
N,N-diethyl-m-toluamide  (ISO)
nitrofen  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrogallol  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
triacsin C  (ISO)
triadimefon  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
troglitazone  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. TDP-43 pathology in sporadic ALS occurs in motor neurons lacking the RNA editing enzyme ADAR2. Aizawa H, etal., Acta Neuropathol. 2010 Jul;120(1):75-84. doi: 10.1007/s00401-010-0678-x. Epub 2010 Apr 7.
2. Acute spinal cord injury persistently reduces R/G RNA editing of AMPA receptors. Barbon A, etal., J Neurochem. 2010 Jul;114(2):397-407. doi: 10.1111/j.1471-4159.2010.06767.x. Epub 2010 Apr 23.
3. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
4. A gene expression map of human chromosome 21 orthologues in the mouse. Gitton Y, etal., Nature 2002 Dec 5;420(6915):586-90.
5. A-to-I editing of microRNAs: regulating the regulators? Gommans WM Semin Cell Dev Biol. 2012 May;23(3):251-7. doi: 10.1016/j.semcdb.2011.09.018. Epub 2011 Oct 5.
6. Profound downregulation of the RNA editing enzyme ADAR2 in ALS spinal motor neurons. Hideyama T, etal., Neurobiol Dis. 2012 Mar;45(3):1121-8. doi: 10.1016/j.nbd.2011.12.033. Epub 2011 Dec 28.
7. Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2. Higuchi M, etal., Nature 2000 Jul 6;406(6791):78-81.
8. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
9. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
10. MGDs mouse GO annotations MGD data from the GO Consortium
11. MGD IEA MGD IEA
12. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
13. ADAR2-dependent RNA editing of AMPA receptor subunit GluR2 determines vulnerability of neurons in forebrain ischemia. Peng PL, etal., Neuron. 2006 Mar 2;49(5):719-33.
14. Human chromosome 21 gene expression atlas in the mouse. Reymond A, etal., Nature 2002 Dec 5;420(6915):582-6.
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Hyperphagia-mediated obesity in transgenic mice misexpressing the RNA-editing enzyme ADAR2. Singh M, etal., J Biol Chem. 2007 Aug 3;282(31):22448-59. Epub 2007 Jun 12.
Additional References at PubMed
PMID:8889548   PMID:9143496   PMID:10051316   PMID:10349636   PMID:10613844   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12459255   PMID:12477932   PMID:12709013   PMID:14610273  
PMID:14612560   PMID:15939761   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16369484   PMID:16382140   PMID:16602821   PMID:16956888   PMID:17369310   PMID:17967808   PMID:18430892  
PMID:18684997   PMID:18799693   PMID:19156214   PMID:19325227   PMID:19361536   PMID:19420382   PMID:20651031   PMID:20826656   PMID:21267068   PMID:21467037   PMID:21615684   PMID:21632755  
PMID:21677750   PMID:21788117   PMID:21847096   PMID:21873635   PMID:22102833   PMID:22284185   PMID:22310477   PMID:22645261   PMID:22916266   PMID:23139803   PMID:23250437   PMID:23323881  
PMID:23571754   PMID:24025532   PMID:24115583   PMID:24440630   PMID:24443933   PMID:24608178   PMID:25260591   PMID:25582055   PMID:26383032   PMID:26669816   PMID:26768488   PMID:26817845  
PMID:27350567   PMID:27893733   PMID:28045133   PMID:28126736   PMID:28288114   PMID:28395340   PMID:28640668   PMID:28874170   PMID:29694894   PMID:30287844   PMID:30697154   PMID:30945056  
PMID:31039163   PMID:31138677   PMID:31815657   PMID:31941663   PMID:31956894   PMID:32169840   PMID:33712600   PMID:33983932   PMID:36221913   PMID:36527980   PMID:36615779   PMID:37100060  
PMID:38157956  


Genomics

Comparative Map Data
Adarb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391077,126,561 - 77,254,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1077,126,560 - 77,254,104 (-)EnsemblGRCm39 Ensembl
GRCm381077,290,727 - 77,418,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1077,290,726 - 77,418,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv371076,753,472 - 76,881,018 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361076,734,449 - 76,861,989 (-)NCBIMGSCv36mm8
Celera1078,334,514 - 78,460,578 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
ADARB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382145,074,578 - 45,226,563 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2145,073,853 - 45,226,560 (+)EnsemblGRCh38hg38GRCh38
GRCh372146,494,493 - 46,646,478 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362145,318,943 - 45,470,902 (+)NCBINCBI36Build 36hg18NCBI36
Build 342145,318,942 - 45,470,902NCBI
Celera2131,601,137 - 31,754,043 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2131,920,569 - 32,018,419 (+)NCBIHuRef
CHM1_12146,055,410 - 46,207,429 (+)NCBICHM1_1
T2T-CHM13v2.02143,436,861 - 43,590,594 (+)NCBIT2T-CHM13v2.0
Adarb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82011,222,171 - 11,350,416 (+)NCBIGRCr8
mRatBN7.22011,222,569 - 11,350,854 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2011,222,583 - 11,350,852 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2011,919,732 - 12,047,120 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02011,280,701 - 11,408,103 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02011,752,435 - 11,879,837 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02011,972,352 - 12,101,022 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2011,972,381 - 12,101,047 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02014,137,226 - 14,264,945 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42011,616,718 - 11,747,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12011,678,671 - 11,744,168 (+)NCBI
Celera2012,725,154 - 12,852,814 (+)NCBICelera
Cytogenetic Map20p12NCBI
Adarb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540741,886,286 - 41,962,897 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540741,886,286 - 41,962,846 (+)NCBIChiLan1.0ChiLan1.0
ADARB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22241,127,906 - 41,286,535 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12135,998,325 - 36,156,517 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02131,374,841 - 31,532,721 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12144,663,136 - 44,816,756 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2144,715,931 - 44,815,748 (+)Ensemblpanpan1.1panPan2
ADARB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13138,715,529 - 38,799,353 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3138,678,184 - 38,796,521 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3137,859,697 - 37,997,419 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03138,267,094 - 38,405,109 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3138,321,094 - 38,405,109 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13138,129,384 - 38,267,671 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03138,090,539 - 38,229,180 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03138,604,578 - 38,742,906 (+)NCBIUU_Cfam_GSD_1.0
Adarb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497137,992,436 - 38,073,951 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367781,053,871 - 1,137,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367781,056,259 - 1,137,772 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADARB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13207,691,174 - 207,791,802 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113207,746,915 - 207,791,809 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213217,610,539 - 217,651,965 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADARB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1288,780,954 - 88,915,672 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl288,833,707 - 88,918,066 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605416,962,483 - 17,101,687 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adarb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474530,549,257 - 30,635,269 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474530,549,195 - 30,635,081 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Adarb1
4381 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:15807
Count of miRNA genes:956
Interacting mature miRNAs:1398
Transcripts:ENSMUST00000020496, ENSMUST00000098374, ENSMUST00000105404, ENSMUST00000105406, ENSMUST00000126073, ENSMUST00000144547, ENSMUST00000146319, ENSMUST00000149738, ENSMUST00000150227, ENSMUST00000150512, ENSMUST00000154607, ENSMUST00000155117, ENSMUST00000156583
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101010826587401095Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101270405184079784Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101270405184079784Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101270405184079784Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101270405184079784Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1270405184079784Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1270405184079784Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1270405184079784Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1270405184079784Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4672040382491121Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104933801283338157Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined104984818783848412Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined104984818783848412Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined104984818783848412Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined104984822283848397Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined104984822283848397Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105109149085091639Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105109149085091639Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105149340082491121Mouse
14746991Manh68_mmandible shape 68 (mouse)105228049786280497Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7398721682491121Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse

Markers in Region
BB220382  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,294,472 - 77,294,593UniSTSGRCm38
MGSCv371076,757,217 - 76,757,338UniSTSGRCm37
Celera1078,338,259 - 78,338,380UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
Whitehead/MRC_RH10879.43UniSTS
Adarb1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,312,443 - 77,313,566UniSTSGRCm38
MGSCv371076,775,188 - 76,776,311UniSTSGRCm37
Celera1078,356,246 - 78,357,369UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
MDB0447  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,290,816 - 77,290,917UniSTSGRCm38
MGSCv371076,753,561 - 76,753,662UniSTSGRCm37
Celera1078,334,603 - 78,334,704UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
Whitehead_YAC10 UniSTS
D10Jhu56  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,407,245 - 77,407,474UniSTSGRCm38
MGSCv371076,869,990 - 76,870,219UniSTSGRCm37
Celera1078,449,550 - 78,449,779UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.5UniSTS
D10Jhu58  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,399,133 - 77,399,319UniSTSGRCm38
MGSCv371076,861,878 - 76,862,064UniSTSGRCm37
Celera1078,441,438 - 78,441,624UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.5UniSTS
RH125148  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,316,183 - 77,316,312UniSTSGRCm38
MGSCv371076,778,928 - 76,779,057UniSTSGRCm37
Celera1078,359,986 - 78,360,115UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
RH125208  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,290,789 - 77,290,897UniSTSGRCm38
MGSCv371076,753,534 - 76,753,642UniSTSGRCm37
Celera1078,334,576 - 78,334,684UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
AW124433  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,291,140 - 77,291,220UniSTSGRCm38
MGSCv371076,753,885 - 76,753,965UniSTSGRCm37
Celera1078,334,927 - 78,335,007UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
Whitehead/MRC_RH10879.11UniSTS
Whitehead/MRC_RH10876.13UniSTS
UniSTS:224324  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,316,191 - 77,316,366UniSTSGRCm38
MGSCv371076,778,936 - 76,779,111UniSTSGRCm37
Celera1078,359,994 - 78,360,170UniSTS
Cytogenetic Map10CUniSTS
cM Map1041.4UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
D10Bwg0424e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,316,130 - 77,316,314UniSTSGRCm38
MGSCv371076,778,875 - 76,779,059UniSTSGRCm37
Celera1078,359,933 - 78,360,117UniSTS
Cytogenetic Map10CUniSTS
cM Map1043.0UniSTS
D10Bwg0447e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381077,290,733 - 77,290,905UniSTSGRCm38
MGSCv371076,753,478 - 76,753,650UniSTSGRCm37
Celera1078,334,520 - 78,334,692UniSTS
Cytogenetic Map10CUniSTS
cM Map1043.0UniSTS
cM Map1041.4UniSTS
Adarb1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001024838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_130895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_004429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_021486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC153830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF291049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF403106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF403107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF403108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF403109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF411054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF525421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW124433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW558573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY162454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB220382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB622419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE628136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE628888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF017513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY281644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ115965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ169505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R75314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  R75315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020496   ⟹   ENSMUSP00000020496
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,560 - 77,254,099 (-)Ensembl
GRCm38.p6 Ensembl1077,290,726 - 77,418,265 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098374   ⟹   ENSMUSP00000095976
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,560 - 77,254,104 (-)Ensembl
GRCm38.p6 Ensembl1077,290,726 - 77,418,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105404   ⟹   ENSMUSP00000101044
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,561 - 77,254,061 (-)Ensembl
GRCm38.p6 Ensembl1077,290,727 - 77,418,227 (-)Ensembl
RefSeq Acc Id: ENSMUST00000105406   ⟹   ENSMUSP00000101046
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,562 - 77,254,104 (-)Ensembl
GRCm38.p6 Ensembl1077,290,728 - 77,418,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000126073   ⟹   ENSMUSP00000114608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,561 - 77,254,061 (-)Ensembl
GRCm38.p6 Ensembl1077,290,727 - 77,418,227 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144547   ⟹   ENSMUSP00000122102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,126,561 - 77,254,104 (-)Ensembl
GRCm38.p6 Ensembl1077,290,727 - 77,418,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146319
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,161,549 - 77,176,010 (-)Ensembl
GRCm38.p6 Ensembl1077,325,715 - 77,340,176 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,151,944 - 77,254,045 (-)Ensembl
GRCm38.p6 Ensembl1077,316,110 - 77,418,211 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,158,625 - 77,254,072 (-)Ensembl
GRCm38.p6 Ensembl1077,322,791 - 77,418,238 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150512
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,161,172 - 77,253,688 (-)Ensembl
GRCm38.p6 Ensembl1077,325,338 - 77,417,854 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,151,958 - 77,254,099 (-)Ensembl
GRCm38.p6 Ensembl1077,316,124 - 77,418,265 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155117
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,161,624 - 77,206,075 (-)Ensembl
GRCm38.p6 Ensembl1077,325,790 - 77,370,241 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156583
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1077,161,363 - 77,254,051 (-)Ensembl
GRCm38.p6 Ensembl1077,325,529 - 77,418,217 (-)Ensembl
RefSeq Acc Id: NM_001024837   ⟹   NP_001020008
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,107 (-)NCBI
GRCm381077,290,727 - 77,418,273 (-)ENTREZGENE
MGSCv371076,753,472 - 76,881,018 (-)RGD
Celera1078,334,514 - 78,460,578 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001024838   ⟹   NP_001020009
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,107 (-)NCBI
GRCm381077,290,727 - 77,418,273 (-)NCBI
Sequence:
RefSeq Acc Id: NM_130895   ⟹   NP_570965
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,107 (-)NCBI
GRCm381077,290,727 - 77,418,273 (-)ENTREZGENE
MGSCv371076,753,472 - 76,881,018 (-)RGD
Celera1078,334,514 - 78,460,578 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_004429
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,107 (-)NCBI
GRCm381077,290,727 - 77,418,273 (-)ENTREZGENE
MGSCv371076,753,472 - 76,881,018 (-)RGD
Celera1078,334,514 - 78,460,578 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_021486
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,107 (-)NCBI
GRCm381077,290,727 - 77,418,273 (-)ENTREZGENE
MGSCv371076,753,472 - 76,881,018 (-)RGD
Celera1078,334,514 - 78,460,578 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513062   ⟹   XP_006513125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,179,809 (-)NCBI
GRCm381077,290,727 - 77,343,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513063   ⟹   XP_006513126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,179,809 (-)NCBI
GRCm381077,290,727 - 77,343,975 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006513064   ⟹   XP_006513127
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,125 (-)NCBI
GRCm381077,290,727 - 77,418,292 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244823   ⟹   XP_030100683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,234,902 (-)NCBI
GRCm381077,290,727 - 77,398,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155500   ⟹   XP_036011393
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155501   ⟹   XP_036011394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,254,125 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155502   ⟹   XP_036011395
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,175,805 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155503   ⟹   XP_036011396
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391077,126,561 - 77,176,019 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001020008 (Get FASTA)   NCBI Sequence Viewer  
  NP_001020009 (Get FASTA)   NCBI Sequence Viewer  
  NP_570965 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513125 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513126 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513127 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100683 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011393 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011394 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011395 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011396 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK17102 (Get FASTA)   NCBI Sequence Viewer  
  AAL01301 (Get FASTA)   NCBI Sequence Viewer  
  AAL01302 (Get FASTA)   NCBI Sequence Viewer  
  AAL01303 (Get FASTA)   NCBI Sequence Viewer  
  AAL01304 (Get FASTA)   NCBI Sequence Viewer  
  AAM83099 (Get FASTA)   NCBI Sequence Viewer  
  AAN86546 (Get FASTA)   NCBI Sequence Viewer  
  ACN49026 (Get FASTA)   NCBI Sequence Viewer  
  BAE23623 (Get FASTA)   NCBI Sequence Viewer  
  BAE23858 (Get FASTA)   NCBI Sequence Viewer  
  BAE24831 (Get FASTA)   NCBI Sequence Viewer  
  BAE27830 (Get FASTA)   NCBI Sequence Viewer  
  EDL31810 (Get FASTA)   NCBI Sequence Viewer  
  EDL31811 (Get FASTA)   NCBI Sequence Viewer  
  EDL31812 (Get FASTA)   NCBI Sequence Viewer  
  EDL31813 (Get FASTA)   NCBI Sequence Viewer  
  EDL31814 (Get FASTA)   NCBI Sequence Viewer  
  EDL31815 (Get FASTA)   NCBI Sequence Viewer  
  EDL31816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000020496
  ENSMUSP00000020496.8
  ENSMUSP00000095976
  ENSMUSP00000095976.3
  ENSMUSP00000101044.3
  ENSMUSP00000101046.2
  ENSMUSP00000114608.2
  ENSMUSP00000122102.2
GenBank Protein Q91ZS8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020008   ⟸   NM_001024837
- Peptide Label: isoform 2
- UniProtKB: Q91ZS9 (UniProtKB/Swiss-Prot),   Q91ZS7 (UniProtKB/Swiss-Prot),   Q91ZS6 (UniProtKB/Swiss-Prot),   Q8K3X1 (UniProtKB/Swiss-Prot),   Q3UHM7 (UniProtKB/Swiss-Prot),   Q99MU8 (UniProtKB/Swiss-Prot),   Q91ZS8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_570965   ⟸   NM_130895
- Peptide Label: isoform 1
- UniProtKB: Q91ZS8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006513127   ⟸   XM_006513064
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513125   ⟸   XM_006513062
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006513126   ⟸   XM_006513063
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001020009   ⟸   NM_001024838
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030100683   ⟸   XM_030244823
- Peptide Label: isoform X3
- UniProtKB: Q91ZS9 (UniProtKB/Swiss-Prot),   Q91ZS8 (UniProtKB/Swiss-Prot),   Q91ZS7 (UniProtKB/Swiss-Prot),   Q91ZS6 (UniProtKB/Swiss-Prot),   Q8K3X1 (UniProtKB/Swiss-Prot),   Q3UHM7 (UniProtKB/Swiss-Prot),   Q99MU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000101044   ⟸   ENSMUST00000105404
RefSeq Acc Id: ENSMUSP00000101046   ⟸   ENSMUST00000105406
RefSeq Acc Id: ENSMUSP00000122102   ⟸   ENSMUST00000144547
RefSeq Acc Id: ENSMUSP00000020496   ⟸   ENSMUST00000020496
RefSeq Acc Id: ENSMUSP00000114608   ⟸   ENSMUST00000126073
RefSeq Acc Id: ENSMUSP00000095976   ⟸   ENSMUST00000098374
RefSeq Acc Id: XP_036011393   ⟸   XM_036155500
- Peptide Label: isoform X3
- UniProtKB: Q91ZS9 (UniProtKB/Swiss-Prot),   Q91ZS8 (UniProtKB/Swiss-Prot),   Q91ZS7 (UniProtKB/Swiss-Prot),   Q91ZS6 (UniProtKB/Swiss-Prot),   Q8K3X1 (UniProtKB/Swiss-Prot),   Q3UHM7 (UniProtKB/Swiss-Prot),   Q99MU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036011394   ⟸   XM_036155501
- Peptide Label: isoform X3
- UniProtKB: Q91ZS9 (UniProtKB/Swiss-Prot),   Q91ZS8 (UniProtKB/Swiss-Prot),   Q91ZS7 (UniProtKB/Swiss-Prot),   Q91ZS6 (UniProtKB/Swiss-Prot),   Q8K3X1 (UniProtKB/Swiss-Prot),   Q3UHM7 (UniProtKB/Swiss-Prot),   Q99MU8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036011396   ⟸   XM_036155503
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036011395   ⟸   XM_036155502
- Peptide Label: isoform X3
- UniProtKB: Q91ZS9 (UniProtKB/Swiss-Prot),   Q91ZS8 (UniProtKB/Swiss-Prot),   Q91ZS7 (UniProtKB/Swiss-Prot),   Q91ZS6 (UniProtKB/Swiss-Prot),   Q8K3X1 (UniProtKB/Swiss-Prot),   Q3UHM7 (UniProtKB/Swiss-Prot),   Q99MU8 (UniProtKB/Swiss-Prot)
Protein Domains
A to I editase   DRBM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91ZS8-F1-model_v2 AlphaFold Q91ZS8 1-711 view protein structure

Promoters
RGD ID:6848966
Promoter ID:MM_XEF:718
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001032693,   NM_001032752,   NM_001095092,   NM_001102720,   NM_001111074,   NM_130584,   NM_131610,   NM_166903,   NM_204240,   NR_004440
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361076,784,976 - 76,785,476 (-)MPROMDB
RGD ID:6818885
Promoter ID:MM_KWN:4660
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000048631
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361076,802,921 - 76,803,421 (-)MPROMDB
RGD ID:6818915
Promoter ID:MM_KWN:4662
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000020496,   ENSMUST00000098374,   NR_004429,   NR_021486,   NR_027377,   OTTMUST00000048626,   OTTMUST00000048628,   OTTMUST00000048629,   OTTMUST00000048630,   OTTMUST00000048632,   UC007FVM.1,   UC007FVN.1,   UC007FVQ.1,   UC007FVR.1,   UC007FVS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361076,879,811 - 76,881,332 (-)MPROMDB
RGD ID:8672410
Promoter ID:EPDNEW_M14236
Type:single initiation site
Name:Adarb1_2
Description:Mus musculus adenosine deaminase, RNA-specific, B1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14237  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381077,397,519 - 77,397,579EPDNEW
RGD ID:8672412
Promoter ID:EPDNEW_M14237
Type:initiation region
Name:Adarb1_1
Description:Mus musculus adenosine deaminase, RNA-specific, B1 , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14236  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381077,418,238 - 77,418,298EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:891999 AgrOrtholog
Ensembl Genes ENSMUSG00000020262 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020496 ENTREZGENE
  ENSMUST00000020496.14 UniProtKB/Swiss-Prot
  ENSMUST00000098374 ENTREZGENE
  ENSMUST00000098374.9 UniProtKB/Swiss-Prot
  ENSMUST00000105404 ENTREZGENE
  ENSMUST00000105404.9 UniProtKB/TrEMBL
  ENSMUST00000105406.8 UniProtKB/Swiss-Prot
  ENSMUST00000126073.8 UniProtKB/TrEMBL
  ENSMUST00000144547 ENTREZGENE
  ENSMUST00000144547.8 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro A_deamin UniProtKB/Swiss-Prot
  ADAR2_DSRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADAR2_DSRM_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  dsRBD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:110532 UniProtKB/Swiss-Prot
MGD MGI:891999 ENTREZGENE
NCBI Gene 110532 ENTREZGENE
PANTHER DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1 UniProtKB/Swiss-Prot
  EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN UniProtKB/Swiss-Prot
  LOQUACIOUS, ISOFORM B UniProtKB/TrEMBL
  LOQUACIOUS, ISOFORM B UniProtKB/TrEMBL
Pfam A_deamin UniProtKB/Swiss-Prot
  dsrm UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adarb1 PhenoGen
PROSITE A_DEAMIN_EDITASE UniProtKB/Swiss-Prot
  DS_RBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ADEAMc UniProtKB/Swiss-Prot
  DSRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D6RDS5_MOUSE UniProtKB/TrEMBL
  D6RGS1_MOUSE UniProtKB/TrEMBL
  Q3UHM7 ENTREZGENE
  Q3UTX2_MOUSE UniProtKB/TrEMBL
  Q3UUK2_MOUSE UniProtKB/TrEMBL
  Q8K3X1 ENTREZGENE
  Q91ZS6 ENTREZGENE
  Q91ZS7 ENTREZGENE
  Q91ZS8 ENTREZGENE
  Q91ZS9 ENTREZGENE
  Q99MU8 ENTREZGENE
  RED1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary C3TTQ1 UniProtKB/Swiss-Prot
  Q3UHM7 UniProtKB/Swiss-Prot
  Q8K3X1 UniProtKB/Swiss-Prot
  Q91ZS6 UniProtKB/Swiss-Prot
  Q91ZS7 UniProtKB/Swiss-Prot
  Q91ZS9 UniProtKB/Swiss-Prot
  Q99MU8 UniProtKB/Swiss-Prot