Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

GENE - TERM ANNOTATION REPORT

8 Annotations Found.

An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with PRKN (Homo sapiens)
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: (PMID:10973942), (PMID:11439185), (PMID:12150907), (PMID:12628165), (PMID:12925569), (PMID:16227987), (PMID:19229105), (PMID:19880420), (PMID:20823226), (PMID:21376232), (PMID:23685073), (PMID:23858059), (PMID:25621951), (PMID:32047033)
  • Original References(s): PMID:10973942 PMID:11439185 PMID:12150907 PMID:12628165 PMID:12925569 PMID:16227987 PMID:19229105 PMID:19880420 PMID:20823226 PMID:21376232 PMID:23685073 PMID:23858059 PMID:25621951 PMID:32047033


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from sequence or structural similarity (ISS)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from sequence or structural similarity with UniProtKB:O60260
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000024
  • Original References(s): GO_REF:0000024


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from electronic annotation (IEA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from electronic annotation with UniProtKB:O60260 & ensembl:ENSP00000355865
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000107
  • Original References(s): GO_REF:0000107


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from electronic annotation (IEA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from electronic annotation with UniProtKB:Q9WVS6 & ensembl:ENSMUSP00000140587
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000107
  • Original References(s): GO_REF:0000107


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from sequence or structural similarity (ISS)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from sequence or structural similarity with UniProtKB:Q7KTX7
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000024
  • Original References(s): GO_REF:0000024


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from electronic annotation (IEA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from electronic annotation with PANTHER:PTHR11685:SF471
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000118
  • Original References(s): GO_REF:0000118


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from biological aspect of ancestor (IBA)
    		•  
  • The annotation was made from RGD automated data pipeline
  • The annotation has been inferred from biological aspect of ancestor with FB:FBgn0017418 & FB:FBgn0041100 & MGI:1355296 & PANTHER:PTN000188395 & SGD:S000001725 & TAIR:locus:2050100 & TAIR:locus:2057401 & TAIR:locus:2101074 & UniProtKB:O60260 & UniProtKB:P50876 & UniProtKB:Q6ZMZ0 & UniProtKB:Q9UBS8
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: GO_REF:0000033
  • Original References(s): GO_REF:0000033


    • An association has been curated linking Prkn and ubiquitin protein ligase activity in Rattus norvegicus.        

  • The association was inferred from sequence orthology (ISO)
    		•  
  • The annotation was made from RGD pipelines: Rat ISO annotations derived from the GO annotations of orthologous genes in other species.
  • The annotation has been inferred from sequence orthology with Prkn (Mus musculus)
  • 351 RGD objects have been annotated to ubiquitin protein ligase activity  (GO:0061630)
  • 67 papers in RGD have been used to annotate Prkn
  • Qualifier: enables
  • Curation Notes: (PMID:20064468), (PMID:28063983)
  • Original References(s): PMID:20064468 PMID:28063983


    • Go Back to source page   Continue to Ontology report