CHOLESTEROL BIOSYNTHETIC PATHWAY (PW:0000454)

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Description

The study of cholesterol spans decades of research and has garnered several Nobel prizes. Cholesterol, a major end product of the isoprenoid biosynthetic pathway, is an essential component of cell membranes and lipid rafts and is the precursor for the synthesis of steroid hormones and bile acids. Cholesterol is derived from diet or via de novo synthesis from acetyl-CoA. The biosynthetic pathway requires some 30 reactions involving enzymes localized in the cytosol, ER membrane and po

Pathway Diagram:

Ariadne Genomics Inc. 5-phosphomevalonate Lss lanosterol to cholesterol enzymes Pmvk 5-phosphomevalonate ---> 5-pyrophosphomevalonate Mvd squalene epoxide ---> lanosterol Sqle Fdft1 Fdps Idi1 Mvk Hmgcr Hmgcs1 Acat2 5-pyrophosphomevalonate ---> isopentenyl pyrophosphate lanosterol ---> cholesterol cholesterol squalene epoxide squalene HMG-CoA acetoacetyl-CoA acetyl-CoA squalene ---> squalene epoxide isopentenyl pyrophosphate ---> geranyl pyrophosphate farnesyl pyrophosphate ---> squalene acetyl-CoA ---> HMG-CoA dimethylallyl pyrophosphate ---> geranyl pyrophosphate mevalonate ---> 5-phosphomevalonate dimethylallyl pyrophosphate <--> isopentenyl pyrophosphate acetoacetyl-CoA <--> acetyl-CoA acetoacetyl-CoA ---> HMG-CoA HMG-CoA ---> mevalonate isopentenyl pyrophosphate ---> farnesyl pyrophosphate geranyl pyrophosphate ---> farnesyl pyrophosphate mevalonate 5-pyrophosphomevalonate isopentenyl pyrophosphate dimethylallyl pyrophosphate geranyl pyrophosphate farnesyl pyrophosphate lanosterol
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Genes in Pathway:

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  • Human
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cholesterol biosynthetic pathway term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Acat2 acetyl-CoA acetyltransferase 2 GBrowse link ISS 1 41,922,020 41,940,074 RGD:2316857 RGD
G Cyp51 cytochrome P450, family 51 GBrowse link IDA 4 26,752,677 26,771,131 RGD:2316902 RGD
G Cyp51 cytochrome P450, family 51 GBrowse link ISS 4 26,752,677 26,771,131 RGD:2316857 RGD
G Cyp51 cytochrome P450, family 51 GBrowse link ISS 4 26,752,677 26,771,131 RGD:2316868 RGD
G Dhcr24 24-dehydrocholesterol reductase GBrowse link ISS 5 127,637,438 127,662,621 RGD:2316857 RGD
G Dhcr24 24-dehydrocholesterol reductase GBrowse link ISS 5 127,637,438 127,662,621 RGD:2316868 RGD
G Dhcr7 7-dehydrocholesterol reductase GBrowse link IMP 1 204,245,562 204,258,913 RGD:2316918 RGD
G Dhcr7 7-dehydrocholesterol reductase GBrowse link ISS 1 204,245,562 204,258,913 RGD:2316857 RGD
G Dhcr7 7-dehydrocholesterol reductase GBrowse link ISS 1 204,245,562 204,258,913 RGD:2316868 RGD
G Ebp emopamil binding protein (sterol isomerase) GBrowse link ISS X 26,331,199 26,337,542 RGD:2316857 RGD
G Ebp emopamil binding protein (sterol isomerase) GBrowse link ISS X 26,331,199 26,337,542 RGD:2316868 RGD
G Fdft1 farnesyl diphosphate farnesyl transferase 1 GBrowse link ISS 15 42,425,336 42,453,390 RGD:2316857 RGD
G Fdft1 farnesyl diphosphate farnesyl transferase 1 GBrowse link IMP 15 42,425,336 42,453,390 RGD:1626611 RGD
G Fdps farnesyl diphosphate synthase GBrowse link ISS 2 181,138,474 181,177,903 RGD:2316857 RGD
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase GBrowse link ISS 2 27,127,504 27,149,580 RGD:2316857 RGD
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) GBrowse link ISS 2 51,737,090 51,754,583 RGD:2316857 RGD
G Idi1 isopentenyl-diphosphate delta isomerase 1 GBrowse link ISS 17 72,557,196 72,563,149 RGD:2316857 RGD
G Lbr lamin B receptor GBrowse link ISS 13 97,814,439 97,834,860 RGD:2316857 RGD
G Lbr lamin B receptor GBrowse link ISS 13 97,814,439 97,834,860 RGD:2316868 RGD
G Lss lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) GBrowse link ISS 20 12,507,575 12,534,612 RGD:2316857 RGD
G Lss lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) GBrowse link IDA 20 12,507,575 12,534,612 RGD:2316919 RGD
G Lss lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) GBrowse link IMP 20 12,507,575 12,534,612 RGD:1626611 RGD
G Mvd mevalonate (diphospho) decarboxylase GBrowse link ISS 19 52,722,306 52,732,312 RGD:2316857 RGD
G Mvk mevalonate kinase ISS RGD:2316857 RGD
G Nsdhl NAD(P) dependent steroid dehydrogenase-like GBrowse link ISS X 158,923,025 158,954,914 RGD:2316857 RGD
G Nsdhl NAD(P) dependent steroid dehydrogenase-like GBrowse link ISS X 158,923,025 158,954,914 RGD:2316868 RGD
G Pmvk phosphomevalonate kinase GBrowse link ISS 2 181,655,658 181,665,214 RGD:2316857 RGD
G Sc5d sterol-C5-desaturase GBrowse link IDA 8 45,229,976 45,238,924 RGD:2316911 RGD
G Sc5d sterol-C5-desaturase GBrowse link ISS 8 45,229,976 45,238,924 RGD:2316857 RGD
G Sc5d sterol-C5-desaturase GBrowse link ISS 8 45,229,976 45,238,924 RGD:2316868 RGD
G Sqle squalene epoxidase GBrowse link ISS 7 96,096,897 96,111,772 RGD:2316857 RGD

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Small MoleculeHMG-CoA3-hydroxy-3-methylglutaryl-conezyme A
Small MoleculeAcetyl-CoAacetyl coenzyme A
Small MoleculeDMAPPdimethylallyl pyrophosphate
Small MoleculeFPPfarnesyl pyrophosphate
Small MoleculeGPPgeranyl pyrophosphate
Small MoleculeIPPisopentenyl pyrophosphate
Small MoleculeMevalonate-PPmevalonate pyrophosphate
Gene Grouplanosterol to cholesterol enzymesThe conversion of lanosterol to cholesterol in the cholesterol biosynthetic pathway requires several reaction and enzyme types in some 19 reaction steps

Pathway Gene Annotations

Disease Annotations Associated with Genes in the cholesterol biosynthetic pathway
Disease TermsGene Symbols
Pelger-Huet AnomalyLbr
Diabetes MellitusHmgcr
CataractFdft1
DementiaHmgcr
Intellectual DisabilityAcat2
Metabolism, Inborn ErrorsHmgcr
Muscle HypotoniaDhcr7
DyslipidemiasHmgcr
Chondrodysplasia PunctataEbp
ObesityHmgcs1 , Sqle
Diabetes Mellitus, Type 2Hmgcr
Metabolic Syndrome XAcat2 , Hmgcr
Lipid Metabolism, Inborn ErrorsDhcr24 , Mvk
Muscular DiseasesHmgcr
Hypertension, PulmonaryHmgcr
ArteriosclerosisAcat2
Acute Kidney InjuryHmgcr
Porokeratosis, disseminated superficial actinic 1Mvk
Kidney Failure, ChronicHmgcr
Ichthyosiform Erythroderma, CongenitalEbp , Nsdhl
Alzheimer DiseaseHmgcr
Hepatolenticular DegenerationHmgcr
Huntington DiseaseHmgcr
UveitisHmgcr
Gallbladder DiseasesAcat2
BacteremiaHmgcr
Parkinson DiseaseHmgcr
HypercholesterolemiaHmgcr , Acat2
Chondrodysplasia punctata 2, X-linked dominantEbp
Non-alcoholic Fatty Liver DiseaseHmgcr
Angina, UnstableHmgcr
Arthritis, ExperimentalHmgcr
AsthmaHmgcr
Brain InjuriesHmgcr
CholelithiasisSqle
Coronary DiseaseHmgcr
Coronary Artery DiseaseAcat2 , Hmgcr
Diabetes Mellitus, ExperimentalHmgcr , Hmgcs1
Encephalomyelitis, Autoimmune, ExperimentalHmgcr
Neuritis, Autoimmune, ExperimentalHmgcr
Spinal Cord CompressionHmgcs1
Surgical Wound DehiscenceHmgcr
Reperfusion InjuryHmgcr
Smith-Lemli-Opitz SyndromeDhcr7
StrokeHmgcr
Mevalonate Kinase DeficiencyMvk
Acute Lung InjuryHmgcr
Drug-Induced Liver Injury, ChronicHmgcr
HYDROPS-ECTOPIC CALCIFICATION-MOTH-EATEN SKELETAL DYSPLASIALbr
CK SYNDROMENsdhl
REYNOLDS SYNDROMELbr
Congenital Hemidysplasia with Ichthyosiform Erythroderma and Limb DefectsNsdhl
DesmosterolosisDhcr24
Pathway Annotations Associated with Genes in the cholesterol biosynthetic pathway
Pathway TermsGene Symbols
pyruvate metabolic pathwayAcat2
tryptophan metabolic pathwayAcat2
fatty acid metabolic pathwayAcat2
glyoxylate and dicarboxylate metabolic pathwayAcat2
propanoate metabolic pathwayAcat2
butanoate metabolic pathwayAcat2 , Hmgcs1
ketone bodies metabolic pathwayAcat2 , Hmgcs1
valine, leucine and isoleucine degradation pathwayAcat2 , Hmgcs1
lysine degradation pathwayAcat2
metabolic syndrome pathwayHmgcr
terpenoid biosynthetic pathwayHmgcr , Fdps , Hmgcs1 , Mvd , Mvk , Idi1 , Acat2 , Pmvk
cholesterol biosynthetic pathwayCyp51 , Hmgcr , Fdft1 , Fdps , Hmgcs1 , Sc5d , Lbr , Lss , Ebp , Mvd , Mvk , Dhcr7 , Idi1 , Dhcr24 , Pmvk , Nsdhl , Acat2 , Sqle
statin pharmacodynamics pathwayHmgcr
ketone bodies biosynthetic pathwayHmgcs1
bile acid transport pathwayHmgcr
forkhead class A signaling pathwayHmgcs1
influenza A virus infection pathwayFdps
steroid biosynthetic pathwayCyp51 , Fdft1 , Sc5d , Lss , Ebp , Dhcr7 , Dhcr24 , Nsdhl , Sqle

References Associated with the cholesterol biosynthetic pathway:

Ontology Path Diagram:

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