|
|
|
CHOLESTEROL BIOSYNTHETIC PATHWAY (PW:0000454)
DescriptionThe study of cholesterol spans decades of research and has
garnered several Nobel prizes. Cholesterol, a major end product of the
isoprenoid biosynthetic pathway, is an essential component of cell membranes
and lipid rafts and is the precursor for the synthesis of steroid hormones and
bile acids. Cholesterol is derived from diet or via de novo synthesis from acetyl-CoA. The biosynthetic pathway
requires some 30 reactions involving enzymes localized in the cytosol, ER membrane
and possibly peroxisomes. The biosynthesis of the 27-carbon molecule from the
initial 2-carbon acetyl-CoA building block involves the formation of mevalonate
in the rate-determining step of the reaction leading to the formation of IPP.
IPP is the substrate for the synthesis of sterols such as cholesterol and of
non-sterol isoprenoids used in a variety of cellular functions. Briefly described,
Acat2 interconverts acetyl-CoA and acetoacetyl-CoA which are condensed into
HMG-CoA by Hmgcs1. The reduction of HMG-CoA to mevalonate is catalyzed by
Hmgcr. The enzyme is the target of statin drugs acting as competitive
inhibitors. Mevalonate is phosphorylated twice sequentially by Mvk and Pmvk,
respectively; the mevalonate-PP product is decarboxylated and then dehydrated
by Mvd to yield IPP. IPP is kept in equilibrium with DMAPP by Idi1. Fdps
catalyzes the head-to-tail condensation of IPP and DMAPP to form GPP first, and
then of GPP and IPP to form FPP. Two molecules of FPP are condensed and then
reduced to form squalene by Fdft1 in the first committed sterol step in the
pathway. An oxygen-dependent step requiring FAD and NADPH followed by cyclization
reactions carried out by Sqle and Lss respectively, convert squalene to lanosterol.
Fdft1, Sqle and Lss enzymes are also targets for the development of cholesterol-lowering
drugs. As these enzymes act downstream of Hmgcr, drugs that inhibit their
function would not interfere with the production of IPP-derived non-sterol
compounds, as explained above (eg. dolichol, ubiquinone). The pathway from
lanosterol to cholesterol involves a series of demethylation, reduction and
oxidation reactions which may proceed via two alternative routes; the exact sequence
of events is still to be established. The availability of cholesterol is
tightly regulated by post-translational modifications, at the transcriptional
level and by feedback mechanisms - the role of the SREBP signaling pathway in the
control of cholesterol synthesis and transport is a notable example. High
levels of cholesterol are associated with cardiovascular diseases, hence the
targeting of biosynthetic enzymes for the development of drugs. On the other
hand, defects in some of the enzymes have been associated with a variety of
disorders and syndromes. To see the Ontology
Report for annotations, GViewer and download click here
[Click here to see the ontology report for associated GO
term - GO:0006695 and entry at Reactome - REACT_9405.2]...(less)
|
Pathway Diagram:
|
|
|
Genes in Pathway:
cholesterol biosynthetic pathway
|
| G |
Acat2 |
acetyl-CoA acetyltransferase 2 |
|
|
ISS |
1 |
41,922,020 |
41,940,074 |
RGD:2316857 |
RGD |
| G |
Cyp51 |
cytochrome P450, family 51 |
|
|
IDA |
4 |
26,752,677 |
26,771,131 |
RGD:2316902 |
RGD |
| G |
Cyp51 |
cytochrome P450, family 51 |
|
|
ISS |
4 |
26,752,677 |
26,771,131 |
RGD:2316857 |
RGD |
| G |
Cyp51 |
cytochrome P450, family 51 |
|
|
ISS |
4 |
26,752,677 |
26,771,131 |
RGD:2316868 |
RGD |
| G |
Dhcr24 |
24-dehydrocholesterol reductase |
|
|
ISS |
5 |
127,637,438 |
127,662,621 |
RGD:2316857 |
RGD |
| G |
Dhcr24 |
24-dehydrocholesterol reductase |
|
|
ISS |
5 |
127,637,438 |
127,662,621 |
RGD:2316868 |
RGD |
| G |
Dhcr7 |
7-dehydrocholesterol reductase |
|
|
IMP |
1 |
204,245,562 |
204,258,913 |
RGD:2316918 |
RGD |
| G |
Dhcr7 |
7-dehydrocholesterol reductase |
|
|
ISS |
1 |
204,245,562 |
204,258,913 |
RGD:2316857 |
RGD |
| G |
Dhcr7 |
7-dehydrocholesterol reductase |
|
|
ISS |
1 |
204,245,562 |
204,258,913 |
RGD:2316868 |
RGD |
| G |
Ebp |
emopamil binding protein (sterol isomerase) |
|
|
ISS |
X |
26,331,199 |
26,337,542 |
RGD:2316857 |
RGD |
| G |
Ebp |
emopamil binding protein (sterol isomerase) |
|
|
ISS |
X |
26,331,199 |
26,337,542 |
RGD:2316868 |
RGD |
| G |
Fdft1 |
farnesyl diphosphate farnesyl transferase 1 |
|
|
ISS |
15 |
42,425,336 |
42,453,390 |
RGD:2316857 |
RGD |
| G |
Fdft1 |
farnesyl diphosphate farnesyl transferase 1 |
|
|
IMP |
15 |
42,425,336 |
42,453,390 |
RGD:1626611 |
RGD |
| G |
Fdps |
farnesyl diphosphate synthase |
|
|
ISS |
2 |
181,138,474 |
181,177,903 |
RGD:2316857 |
RGD |
| G |
Hmgcr |
3-hydroxy-3-methylglutaryl-CoA reductase |
|
|
ISS |
2 |
27,127,504 |
27,149,580 |
RGD:2316857 |
RGD |
| G |
Hmgcs1 |
3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble) |
|
|
ISS |
2 |
51,737,090 |
51,754,583 |
RGD:2316857 |
RGD |
| G |
Idi1 |
isopentenyl-diphosphate delta isomerase 1 |
|
|
ISS |
17 |
72,557,196 |
72,563,149 |
RGD:2316857 |
RGD |
| G |
Lbr |
lamin B receptor |
|
|
ISS |
13 |
97,814,439 |
97,834,860 |
RGD:2316857 |
RGD |
| G |
Lbr |
lamin B receptor |
|
|
ISS |
13 |
97,814,439 |
97,834,860 |
RGD:2316868 |
RGD |
| G |
Lss |
lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) |
|
|
ISS |
20 |
12,507,575 |
12,534,612 |
RGD:2316857 |
RGD |
| G |
Lss |
lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) |
|
|
IDA |
20 |
12,507,575 |
12,534,612 |
RGD:2316919 |
RGD |
| G |
Lss |
lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) |
|
|
IMP |
20 |
12,507,575 |
12,534,612 |
RGD:1626611 |
RGD |
| G |
Mvd |
mevalonate (diphospho) decarboxylase |
|
|
ISS |
19 |
52,722,306 |
52,732,312 |
RGD:2316857 |
RGD |
| G |
Mvk |
mevalonate kinase |
|
|
ISS |
|
|
|
RGD:2316857 |
RGD |
| G |
Nsdhl |
NAD(P) dependent steroid dehydrogenase-like |
|
|
ISS |
X |
158,923,025 |
158,954,914 |
RGD:2316857 |
RGD |
| G |
Nsdhl |
NAD(P) dependent steroid dehydrogenase-like |
|
|
ISS |
X |
158,923,025 |
158,954,914 |
RGD:2316868 |
RGD |
| G |
Pmvk |
phosphomevalonate kinase |
|
|
ISS |
2 |
181,655,658 |
181,665,214 |
RGD:2316857 |
RGD |
| G |
Sc5d |
sterol-C5-desaturase |
|
|
IDA |
8 |
45,229,976 |
45,238,924 |
RGD:2316911 |
RGD |
| G |
Sc5d |
sterol-C5-desaturase |
|
|
ISS |
8 |
45,229,976 |
45,238,924 |
RGD:2316857 |
RGD |
| G |
Sc5d |
sterol-C5-desaturase |
|
|
ISS |
8 |
45,229,976 |
45,238,924 |
RGD:2316868 |
RGD |
| G |
Sqle |
squalene epoxidase |
|
|
ISS |
7 |
96,096,897 |
96,111,772 |
RGD:2316857 |
RGD |
|
|
|
Pathway Gene Annotations |
|
Disease Annotations Associated with Genes in the cholesterol biosynthetic pathway
|
|
|
|
| Acat2 | Arteriosclerosis , Coronary Artery Disease , Gallbladder Diseases , Hypercholesterolemia , Intellectual Disability , Metabolic Syndrome X | |
| Dhcr24 | Desmosterolosis , Lipid Metabolism, Inborn Errors | | Dhcr7 | Muscle Hypotonia , Smith-Lemli-Opitz Syndrome | | Ebp | Chondrodysplasia Punctata , Chondrodysplasia punctata 2, X-linked dominant , Ichthyosiform Erythroderma, Congenital | | Fdft1 | Cataract | |
| Hmgcr | Acute Kidney Injury , Acute Lung Injury , Alzheimer Disease , Angina, Unstable , Arthritis, Experimental , Asthma , Bacteremia , Brain Injuries , Coronary Artery Disease , Coronary Disease , Dementia , Diabetes Mellitus , Diabetes Mellitus, Experimental , Diabetes Mellitus, Type 2 , Drug-Induced Liver Injury, Chronic , Dyslipidemias , Encephalomyelitis, Autoimmune, Experimental , Hepatolenticular Degeneration , Huntington Disease , Hypercholesterolemia , Hypertension, Pulmonary , Kidney Failure, Chronic , Metabolic Syndrome X , Metabolism, Inborn Errors , Muscular Diseases , Neuritis, Autoimmune, Experimental , Non-alcoholic Fatty Liver Disease , Parkinson Disease , Reperfusion Injury , Stroke , Surgical Wound Dehiscence , Uveitis | | Hmgcs1 | Diabetes Mellitus, Experimental , Obesity , Spinal Cord Compression | |
| Lbr | HYDROPS-ECTOPIC CALCIFICATION-MOTH-EATEN SKELETAL DYSPLASIA , Pelger-Huet Anomaly , REYNOLDS SYNDROME | |
|
| Mvk | Lipid Metabolism, Inborn Errors , Mevalonate Kinase Deficiency , Porokeratosis, disseminated superficial actinic 1 | | Nsdhl | CK SYNDROME , Congenital Hemidysplasia with Ichthyosiform Erythroderma and Limb Defects , Ichthyosiform Erythroderma, Congenital | |
|
| Sqle | Cholelithiasis , Obesity | |
| Pelger-Huet Anomaly | Lbr | | Diabetes Mellitus | Hmgcr | | Cataract | Fdft1 | | Dementia | Hmgcr | | Intellectual Disability | Acat2 | | Metabolism, Inborn Errors | Hmgcr | | Muscle Hypotonia | Dhcr7 | | Dyslipidemias | Hmgcr | | Chondrodysplasia Punctata | Ebp | | Obesity | Hmgcs1 , Sqle | | Diabetes Mellitus, Type 2 | Hmgcr | | Metabolic Syndrome X | Acat2 , Hmgcr | | Lipid Metabolism, Inborn Errors | Dhcr24 , Mvk | | Muscular Diseases | Hmgcr | | Hypertension, Pulmonary | Hmgcr | | Arteriosclerosis | Acat2 | | Acute Kidney Injury | Hmgcr | | Porokeratosis, disseminated superficial actinic 1 | Mvk | | Kidney Failure, Chronic | Hmgcr | | Ichthyosiform Erythroderma, Congenital | Ebp , Nsdhl | | Alzheimer Disease | Hmgcr | | Hepatolenticular Degeneration | Hmgcr | | Huntington Disease | Hmgcr | | Uveitis | Hmgcr | | Gallbladder Diseases | Acat2 | | Bacteremia | Hmgcr | | Parkinson Disease | Hmgcr | | Hypercholesterolemia | Hmgcr , Acat2 | | Chondrodysplasia punctata 2, X-linked dominant | Ebp | | Non-alcoholic Fatty Liver Disease | Hmgcr | | Angina, Unstable | Hmgcr | | Arthritis, Experimental | Hmgcr | | Asthma | Hmgcr | | Brain Injuries | Hmgcr | | Cholelithiasis | Sqle | | Coronary Disease | Hmgcr | | Coronary Artery Disease | Acat2 , Hmgcr | | Diabetes Mellitus, Experimental | Hmgcr , Hmgcs1 | | Encephalomyelitis, Autoimmune, Experimental | Hmgcr | | Neuritis, Autoimmune, Experimental | Hmgcr | | Spinal Cord Compression | Hmgcs1 | | Surgical Wound Dehiscence | Hmgcr | | Reperfusion Injury | Hmgcr | | Smith-Lemli-Opitz Syndrome | Dhcr7 | | Stroke | Hmgcr | | Mevalonate Kinase Deficiency | Mvk | | Acute Lung Injury | Hmgcr | | Drug-Induced Liver Injury, Chronic | Hmgcr | | HYDROPS-ECTOPIC CALCIFICATION-MOTH-EATEN SKELETAL DYSPLASIA | Lbr | | CK SYNDROME | Nsdhl | | REYNOLDS SYNDROME | Lbr | | Congenital Hemidysplasia with Ichthyosiform Erythroderma and Limb Defects | Nsdhl | | Desmosterolosis | Dhcr24 | |
|