HEME BIOSYNTHETIC PATHWAY (PW:0000218)

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Description

Modified tetrapyrroles, such as hemes and chlorophylls, are the most abundant pigments found in nature. Heme is an iron-containing prosthetic group that is an essential constituent of proteins such as hemoglobin, myoglobin and cytochromes. All of heme's carbon and nitrogen atoms can come from acetate and glycine. Succinyl-CoA, from actetate metabolized in the citric acid cycle, is condensed with glycine by delta-aminolevulinic acid synthase (Alas) to form delta-aminolevulinic acid (ALA) in the m

Pathway Diagram:

Ariadne Genomics Inc. Urod uroporphyrinogen III ---> coproporphyrinogen III Alad 5-aminolevulinate ---> porphobilinogen Fech ---> H+ H+ Hmbs ---> NH3 NH3 Urod ---> , Uros ---> . . Alas2 ---> CO2 protoporphyrin IX Fe2+ ---> Fech Uros succinyl- coenzyme A Hmbs L-glycine 5-aminolevulinate porphobilinogen hydroxymethylbilane uroporphyrinogen III coproporphyrinogen III Fe2+ heme protoporphyrinogen IX CO2 Fech Ppox citrate cycle pathway ---> succinyl- coenzyme A citrate cycle pathway protoporphyrin IX ---> heme protoporphyrinogen IX ---> protoporphyrin IX Cpox coproporphyrinogen III ---> protoporphyrinogen IX , Alas2 Alas1 hydroxymethylbilane ---> uroporphyrinogen III porphobilinogen ---> hydroxymethylbilane L-glycine ---> 5-aminolevulinate
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Genes in Pathway:

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heme biosynthetic pathway term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Alad aminolevulinate dehydratase GBrowse link IEA 5 79,505,645 79,515,983 RGD:1578396 RGD
G Alad aminolevulinate dehydratase GBrowse link ISS 5 79,505,645 79,515,983 RGD:4144542 RGD
G Alas1 aminolevulinate, delta-, synthase 1 ISS RGD:4144542 RGD
G Alas1 aminolevulinate, delta-, synthase 1 IEA RGD:1578396 RGD
G Alas1 aminolevulinate, delta-, synthase 1 IDA RGD:1601233 RGD
G Alas2 aminolevulinate, delta-, synthase 2 ISS RGD:4144542 RGD
G Alas2 aminolevulinate, delta-, synthase 2 IEA RGD:1578396 RGD
G Cpox coproporphyrinogen oxidase GBrowse link ISS 11 42,748,703 42,758,686 RGD:4144542 RGD
G Cpox coproporphyrinogen oxidase GBrowse link IEA 11 42,748,703 42,758,686 RGD:1578396 RGD
G Fech ferrochelatase GBrowse link ISS 18 60,675,217 60,708,418 RGD:4144542 RGD
G Fech ferrochelatase GBrowse link IEA 18 60,675,217 60,708,418 RGD:1578396 RGD
G Hmbs hydroxymethylbilane synthase GBrowse link IDA 8 47,314,235 47,321,604 RGD:2301704 RGD
G Hmbs hydroxymethylbilane synthase GBrowse link ISS 8 47,314,235 47,321,604 RGD:4144542 RGD
G Hmbs hydroxymethylbilane synthase GBrowse link IEA 8 47,314,235 47,321,604 RGD:1578396 RGD
G Ppox protoporphyrinogen oxidase GBrowse link ISS 13 87,170,602 87,174,740 RGD:4144542 RGD
G Ppox protoporphyrinogen oxidase GBrowse link IEA 13 87,170,602 87,174,740 RGD:1578396 RGD
G Ppox protoporphyrinogen oxidase GBrowse link IDA 13 87,170,602 87,174,740 RGD:1599180 RGD
G Urod uroporphyrinogen decarboxylase GBrowse link ISS 5 137,296,410 137,300,496 RGD:4144542 RGD
G Urod uroporphyrinogen decarboxylase GBrowse link IEA 5 137,296,410 137,300,496 RGD:1578396 RGD
G Urod uroporphyrinogen decarboxylase GBrowse link IDA 5 137,296,410 137,300,496 RGD:2303399 RGD
G Uros uroporphyrinogen III synthase GBrowse link TAS 1 193,184,946 193,205,475 RGD:4144823 RGD
G Uros uroporphyrinogen III synthase GBrowse link IEA 1 193,184,946 193,205,475 RGD:1578396 RGD
G Uros uroporphyrinogen III synthase GBrowse link ISS 1 193,184,946 193,205,475 RGD:4144542 RGD

Pathway Gene Annotations

Disease Annotations Associated with Genes in the heme biosynthetic pathway
Pathway Annotations Associated with Genes in the heme biosynthetic pathway
Pathway TermsGene Symbols
glycine, serine and threonine metabolic pathwayAlas2 , Alas1
porphyrin and chlorophyll metabolic pathwayAlad , Alas2 , Hmbs , Urod , Alas1 , Fech , Uros , Ppox , Cpox
heme biosynthetic pathwayAlad , Alas2 , Hmbs , Urod , Alas1 , Fech , Uros , Ppox , Cpox
hypoxia inducible factor pathwayFech
forkhead class A signaling pathwayAlas1

References Associated with the heme biosynthetic pathway:

Ontology Path Diagram:

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