PENTOSE PHOSPHATE PATHWAY (PW:0000045)

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Description

The pentose phosphate pathway (PPP), also known as the pentose phosphate shunt, represents an alternate route of glucose oxidation. The major route of glucose oxidation in many tissues is via glycolysis. However, 10-20% of glucose will be oxidized via the PPP and this percentage may be higher in tissues involved in lipid biosynthesis. The pathway consists of an oxidative and a non-oxidative phase. The oxidative phase is a series of three irreversible reactions that produce the reducing equivalen

Pathway Diagram:

Ariadne Genomics Inc. gluconeogenesis pathway fructose-6-phosphate (2) ---> glycolysis pathway glycolysis pathway Tkt(2) Taldo1 Tkt Rpe Rpia Pgd cholesterol biosynthetic pathway fatty acid biosynthetic pathway Pgls G6pd ribose-5-phosphate ---> nucleotide metabolic pathway sedoheptulose-7-phosphate <--> ribose-5-phosphate ribulose-5-phosphate <--> xylulose 5-phosphate glucose-6-phosphate ---> NADPH1 fructose-6-phosphate <--> sedoheptulose-7-phosphate ribulose-5-phosphate <--> ribose-5-phosphate erythrose-4-phosphate <--> glyceraldehyde-3-phosphate fructose-6-phosphate (2) <--> xylulose 5-phosphate NADPH1 6-phosphogluconolactone ribulose-5-phosphate glyceraldehyde-3-phosphate glyceraldehyde-3-phosphate (2) fructose-6-phosphate fructose-6-phosphate (2) nucleotide metabolic pathway glucose-6-phosphate glucose-6-phosphate ---> 6-phosphogluconolactone NADPH2 xylulose 5-phosphate sedoheptulose-7-phosphate ribose-5-phosphate glyceraldehyde-3-phosphate <--> xylulose 5-phosphate 6-phosphogluconate 6-phosphogluconolactone ---> 6-phosphogluconate 6-phosphogluconate ---> NADPH2 6-phosphogluconate ---> ribulose-5-phosphate antioxidation NADPH1 ---> fatty acid biosynthetic pathway NADPH2 ---> cholesterol biosynthetic pathway erythrose-4-phosphate glyceraldehyde-3-phosphate (2) <--> erythrose-4-phosphate glucose-6-phosphate ---> glycolysis pathway glyceraldehyde-3-phosphate (2) ---> glycolysis pathway
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pentose phosphate pathway term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aldoa aldolase A, fructose-bisphosphate GBrowse link IEA 1 185,970,658 185,974,615 RGD:6907045 KEGG
G Aldob aldolase B, fructose-bisphosphate GBrowse link IEA 5 66,283,165 66,296,171 RGD:6907045 KEGG
G Aldoc aldolase C, fructose-bisphosphate GBrowse link IEA 10 64,308,826 64,312,415 RGD:6907045 KEGG
G Fbp1 fructose-1,6-bisphosphatase 1 GBrowse link IEA 17 7,795,717 7,818,041 RGD:6907045 KEGG
G Fbp2 fructose-1,6-bisphosphatase 2 GBrowse link IEA 17 7,824,298 7,841,661 RGD:6907045 KEGG
G G6pd glucose-6-phosphate dehydrogenase GBrowse link IEA X 160,186,450 160,192,316 RGD:6907045 KEGG
G G6pd glucose-6-phosphate dehydrogenase GBrowse link IDA X 160,186,450 160,192,316 RGD:1599574 RGD
G Gpi glucose-6-phosphate isomerase GBrowse link IEA 1 86,658,836 86,686,712 RGD:6907045 KEGG
G H6pd hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) GBrowse link IEA 5 167,093,827 167,125,298 RGD:6907045 KEGG
G Pfkl phosphofructokinase, liver GBrowse link IEA 20 11,009,359 11,032,511 RGD:6907045 KEGG
G Pfkm phosphofructokinase, muscle GBrowse link IEA 7 136,826,122 136,846,040 RGD:6907045 KEGG
G Pfkp phosphofructokinase, platelet GBrowse link IEA 17 74,760,912 74,823,046 RGD:6907045 KEGG
G Pgd phosphogluconate dehydrogenase IDA RGD:1599574 RGD
G Pgls 6-phosphogluconolactonase GBrowse link IEA 16 18,791,241 18,796,727 RGD:6907045 KEGG
G Pgm1 phosphoglucomutase 1 GBrowse link IEA 5 120,595,650 120,655,915 RGD:6907045 KEGG
G Prps1 phosphoribosyl pyrophosphate synthetase 1 GBrowse link IEA X 128,249,843 128,271,893 RGD:6907045 KEGG
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 GBrowse link IEA 6 53,652,048 53,653,738 RGD:6907045 KEGG
G Prps2 phosphoribosyl pyrophosphate synthetase 2 GBrowse link IEA X 47,274,362 47,315,274 RGD:6907045 KEGG
G Rbks ribokinase GBrowse link IEA 6 24,792,303 24,868,759 RGD:6907045 KEGG
G Rgn regucalcin (senescence marker protein-30) GBrowse link IEA X 13,037,171 13,052,846 RGD:6907045 KEGG
G Rpe ribulose-5-phosphate-3-epimerase GBrowse link IEA 9 65,470,071 65,490,200 RGD:6907045 KEGG
G Rpe ribulose-5-phosphate-3-epimerase GBrowse link IDA 9 65,470,071 65,490,200 RGD:1599574 RGD
G Rpia ribose 5-phosphate isomerase A GBrowse link IDA 4 103,934,938 103,960,574 RGD:1599574 RGD
G Rpia ribose 5-phosphate isomerase A GBrowse link IEA 4 103,934,938 103,960,574 RGD:6907045 KEGG
G Taldo1 transaldolase 1 GBrowse link IEA 1 201,582,856 201,593,187 RGD:6907045 KEGG
G Taldo1 transaldolase 1 GBrowse link IDA 1 201,582,856 201,593,187 RGD:1599574 RGD
G Tkt transketolase GBrowse link IEA 16 5,908,759 5,933,695 RGD:6907045 KEGG
G Tkt transketolase GBrowse link IDA 16 5,908,759 5,933,695 RGD:1599574 RGD
G Tktl1 transketolase-like 1 GBrowse link IEA X 160,144,916 160,177,852 RGD:6907045 KEGG
G Tktl2 transketolase-like 2 GBrowse link IEA 16 24,919,470 24,921,481 RGD:6907045 KEGG
pentose phosphate pathway - non-oxidative phase term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Rpe ribulose-5-phosphate-3-epimerase GBrowse link TAS 9 65,470,071 65,490,200 RGD:1641814 RGD
G Rpia ribose 5-phosphate isomerase A GBrowse link TAS 4 103,934,938 103,960,574 RGD:1641814 RGD
G Taldo1 transaldolase 1 GBrowse link IDA 1 201,582,856 201,593,187 RGD:1641803 RGD
G Taldo1 transaldolase 1 GBrowse link TAS 1 201,582,856 201,593,187 RGD:1641814 RGD
G Tkt transketolase GBrowse link TAS 16 5,908,759 5,933,695 RGD:1641798 RGD
G Tkt transketolase GBrowse link IDA 16 5,908,759 5,933,695 RGD:1580394 RGD
G Tkt transketolase GBrowse link TAS 16 5,908,759 5,933,695 RGD:1641814 RGD
pentose phosphate pathway - oxidative phase term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G G6pd glucose-6-phosphate dehydrogenase GBrowse link ISS X 160,186,450 160,192,316 RGD:1625539 RGD
G Pgd phosphogluconate dehydrogenase ISS RGD:1625539 RGD
G Pgls 6-phosphogluconolactonase GBrowse link IDA 16 18,791,241 18,796,727 RGD:2311501 RGD

Pathway Gene Annotations

Disease Annotations Associated with Genes in the pentose phosphate pathway
Disease TermsGene Symbols
MalariaG6pd
Noonan SyndromeAldoc
Diabetes MellitusAldob
Intellectual DisabilityGpi
Anemia, Hemolytic, CongenitalGpi
Metabolism, Inborn ErrorsH6pd
CholestasisG6pd
Arts syndromePrps1
ObesityG6pd
Diabetes Mellitus, Type 2Aldob , G6pd
Liver NeoplasmsAldob
Metabolic Syndrome XG6pd
HypoglycemiaFbp1
Autoimmune Diseases of the Nervous SystemAldoc
TeratomaPgm1
Carbohydrate Metabolism, Inborn ErrorsTaldo1
Esophageal NeoplasmsAldob
Neuromuscular DiseasesGpi
Cortisone reductase deficiencyH6pd
Diabetes Mellitus, Type 1G6pd
Glucosephosphate Dehydrogenase DeficiencyG6pd
Optic atrophy polyneuropathy deafnessPrps1
Carcinoma, HepatocellularAldoc
Fructose IntoleranceAldob
JaundiceG6pd
Fructose-1,6-Diphosphatase DeficiencyFbp1
PeritonitisAldob
Fructose Metabolism, Inborn ErrorsFbp1
Anemia, HemolyticG6pd
Anemia, Hemolytic, Congenital NonspherocyticG6pd , Gpi
Neurologic ManifestationsPrps1
Borna DiseaseAldoc
Brain InjuriesG6pd
CystadenomaAldoa
Diabetes Mellitus, ExperimentalAldob , G6pd , H6pd
Glycogen Storage Disease Type VIIPfkm
Multiple SclerosisH6pd
Reperfusion InjuryAldoa , G6pd
Endometrial NeoplasmsPgm1
EndotoxemiaAldoa
StrokeAldoc
HEMOLYTIC ANEMIA, NONSPHEROCYTIC, DUE TO GLUCOSE PHOSPHATE ISOMERASE DEFICIENCYGpi
Glycogen Storage Disease XIIAldoa
Transaldolase DeficiencyTaldo1
Ribose 5-Phosphate Isomerase DeficiencyRpia
Deafness, X-Linked 1Prps1
Spondylometaepiphyseal Dysplasia, Short Limb-Hand TypeTkt
Phosphoribosylpyrophosphate Synthetase SuperactivityPrps1
Glycogen Storage Disease XIVPgm1
Pathway Annotations Associated with Genes in the pentose phosphate pathway
Pathway TermsGene Symbols
glycolysis/gluconeogenesis pathwayAldoa , Aldob , Aldoc , Fbp1 , Gpi , Pfkl , Pfkp , Pfkm , Fbp2 , Pgm1
purine metabolic pathwayPgm1 , Prps1 , Prps1l1 , Prps2
fructose and mannose metabolic pathwayAldoa , Aldob , Aldoc , Fbp1 , Pfkl , Pfkm , Fbp2 , Pfkp
galactose metabolic pathwayPfkl , Pfkp , Pfkm , Pgm1
pentose phosphate pathwayAldoa , Aldob , Aldoc , Fbp1 , G6pd , Gpi , Pfkl , Pgm1 , Prps2 , Rgn , Pfkp , Prps1 , Pfkm , Taldo1 , Fbp2 , Tkt , Prps1l1 , H6pd , Pgls , Rbks , Rpia , Rpe , Pgd , Tktl1 , Tktl2
nucleotide sugar metabolic pathwayGpi , Pgm1
ascorbate and aldarate metabolic pathwayRgn
glutathione metabolic pathwayG6pd
insulin signaling pathwayFbp1 , Fbp2
starch and sucrose metabolic pathwayGpi , Pgm1
amino sugar metabolic pathwayGpi , Pgm1
pentose and glucuronate interconversion pathwayRpe
hypoxia inducible factor pathwayAldoa , Pfkl , Pgm1
glycogen biosynthetic pathwayPgm1
glycogen degradation pathwayPgm1
hexosamine biosynthetic pathwayGpi
pentose phosphate pathway - oxidative phaseG6pd , Pgd , Pgls
pentose phosphate pathway - non-oxidative phaseTaldo1 , Tkt , Rpia , Rpe
glycolysis pathwayAldoa , Aldob , Aldoc , Fbp1 , Gpi , Pfkl , Pfkp , Pfkm , Fbp2 , Pgm1
gluconeogenesis pathwayAldoa , Aldob , Aldoc , Fbp1 , Gpi , Pfkl , Pfkp , Pfkm , Fbp2 , Pgm1
de novo purine biosynthetic pathwayPrps1 , Prps1l1 , Prps2
forkhead class A signaling pathwayAldob

References Associated with the pentose phosphate pathway:

Ontology Path Diagram:

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