RETINOIC ACID METABOLIC PATHWAY (PW:0001004)

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Description

Animal species cannot synthesize retinol or vitamin A. They derive it from precursor carotenoids such as beta-carotene via retinal and they can store it as retinyl esters (REs) which they can hydrolyze (liver is the largest REs storage). Thus, both plant and animal dietary sources can provide vitamin A. Vitamin A metabolites such as retinal and retinoic acid play essential roles in vision and a range of cellular processes. More recently, a role for retinol in mitochondrial signaling where it may

Pathway Diagram:

Ariadne Genomics Inc. retinal dehydrogenases circ_retinol ---> cell_retinol atRA CYPs retinoic acid signaling pathway retinyl esters all-trans retinoic acid retinol dehydrogenases CES1 Lrat all-trans retinoic acid ---> atRA CYPs all-trans retinoic acid ---> retinoic acid signaling pathway retinal Stra6 Ttr Rbp4 Crabp2 apo_Rbp1 apo_Rbp1 ---| Lrat retinyl esters ---> cell_retinol Rbp1 Fabp5 all-trans retinoic acid ---> retinoic acid signaling pathway all-trans retinoic acid ---- Crabp2 all-trans retinoic acid ---- Fabp5 atRAs catabolism all-trans retinoic acid ---- Crabp1 retinal ---> all-trans retinoic acid Rbp4 ---- Stra6 cell_retinol ---- Rbp1 Rbp1 ---- retinal retinal <--> cell_retinol circ_retinol ---- Ttr circ_retinol ---- Rbp4 Rbp4 ---- Ttr cell_retinol ---> retinyl esters apo_Rbp1 --+> CES1 circ_retinol cell_retinol Crabp1
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Genes in Pathway:

  • Rat
  • Mouse
  • Human
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retinoic acid metabolic pathway term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 GBrowse link TAS 1 223,731,675 223,773,285 RGD:6484672 RGD
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 GBrowse link IMP 1 223,731,675 223,773,285 RGD:6771354 RGD
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 GBrowse link IEP 8 75,692,099 75,771,159 RGD:6771322 RGD
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 GBrowse link TAS 8 75,692,099 75,771,159 RGD:6484672 RGD
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 GBrowse link IMP 8 75,692,099 75,771,159 RGD:6771354 RGD
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 GBrowse link IEP 1 120,847,746 120,881,883 RGD:6771322 RGD
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 GBrowse link ISS 1 120,847,746 120,881,883 RGD:6484672 RGD
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 GBrowse link IMP 1 120,847,746 120,881,883 RGD:6771354 RGD
G Crabp1 cellular retinoic acid binding protein 1 GBrowse link ISS 8 58,317,337 58,325,375 RGD:6484672 RGD
G Crabp2 cellular retinoic acid binding protein 2 GBrowse link ISS 2 180,029,801 180,034,147 RGD:6484672 RGD
G Crabp2 cellular retinoic acid binding protein 2 GBrowse link IEP 2 180,029,801 180,034,147 RGD:6771322 RGD
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 GBrowse link ISS 1 241,945,472 241,949,220 RGD:6484672 RGD
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 GBrowse link IEP 1 241,945,472 241,949,220 RGD:6484694 RGD
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 GBrowse link ISS 4 118,734,786 118,751,606 RGD:6484672 RGD
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 GBrowse link IEP 4 118,734,786 118,751,606 RGD:6484694 RGD
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 GBrowse link IMP 4 118,734,786 118,751,606 RGD:6771354 RGD
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 GBrowse link ISS 1 241,954,251 241,961,689 RGD:6484672 RGD
G Dhrs9 dehydrogenase/reductase (SDR family) member 9 GBrowse link IEP 3 51,521,343 51,543,552 RGD:6771322 RGD
G Dhrs9 dehydrogenase/reductase (SDR family) member 9 GBrowse link ISS 3 51,521,343 51,543,552 RGD:6484672 RGD
G Dhrs9 dehydrogenase/reductase (SDR family) member 9 GBrowse link IMP 3 51,521,343 51,543,552 RGD:6771354 RGD
G Fabp5 fatty acid binding protein 5, epidermal ISS RGD:6484672 RGD
G Lrat lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) GBrowse link ISS 2 174,636,382 174,645,444 RGD:6484672 RGD
G Lrat lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) GBrowse link IEP 2 174,636,382 174,645,444 RGD:6484694 RGD
G Rbp1 retinol binding protein 1, cellular GBrowse link IEP 8 103,605,870 103,627,390 RGD:6771322 RGD
G Rbp1 retinol binding protein 1, cellular GBrowse link ISS 8 103,605,870 103,627,390 RGD:6484672 RGD
G Rbp4 retinol binding protein 4, plasma GBrowse link ISS 1 242,443,795 242,450,997 RGD:6484671 RGD
G Rbp4 retinol binding protein 4, plasma GBrowse link ISS 1 242,443,795 242,450,997 RGD:6484672 RGD
G Rdh10 retinol dehydrogenase 10 (all-trans) GBrowse link ISS 5 2,286,373 2,314,154 RGD:6484672 RGD
G Rdh10 retinol dehydrogenase 10 (all-trans) GBrowse link IMP 5 2,286,373 2,314,154 RGD:6771354 RGD
G Rdh16 retinol dehydrogenase 16 (all-trans) GBrowse link IMP 7 67,752,257 67,766,995 RGD:6771354 RGD
G Rdh7 retinol dehydrogenase 7 GBrowse link TAS 7 67,818,370 67,831,729 RGD:6484672 RGD
G Stra6 stimulated by retinoic acid 6 GBrowse link ISS 8 61,920,772 61,939,791 RGD:6484671 RGD
G Stra6 stimulated by retinoic acid 6 GBrowse link ISS 8 61,920,772 61,939,791 RGD:6484672 RGD
G Stra6 stimulated by retinoic acid 6 GBrowse link IEP 8 61,920,772 61,939,791 RGD:6484694 RGD
G Ttr transthyretin GBrowse link ISS 18 12,406,571 12,413,680 RGD:6484671 RGD

Additional Elements in Pathway:

(includes Gene Groups, Small Molecules, Other Pathways..etc.)
Object TypePathway ObjectPathway Object Description
Small Moleculecirc_retinolcirculating retinol
Functional Classretinol dehydrogenasesenzymes that catalyze the reversible conversion of retinol to retinal
Small Moleculecell_retinolintracellular retinol
Functional ClassatRA CYPsthe cytochrome P450 family 26 members involved in the catabolism of retinoic acid
Functional Classretinal dehydrogenasesthe enzymes the catalyze the irreversible conversion of retinal to retinoic acid

Pathway Gene Annotations

Disease Annotations Associated with Genes in the retinoic acid metabolic pathway
Disease TermsGene Symbols
Amyloid NeuropathiesTtr
AmyloidosisTtr
Pancreatic NeoplasmsAldh1a1
ColobomaRbp4
ObesityRbp4
Retinitis PigmentosaLrat
Amyloidosis, FamilialTtr
Diabetes Mellitus, Type 2Rbp4
Night BlindnessRbp4
Spinal DysraphismCyp26a1
Alzheimer DiseaseTtr
Leber Congenital AmaurosisLrat
Amyloid Neuropathies, FamilialTtr
PsoriasisFabp5
Prostatic NeoplasmsFabp5
Vision DisordersRbp4
DiGeorge SyndromeAldh1a2
AvitaminosisRbp4
Carpal Tunnel SyndromeTtr
Brain IschemiaTtr
MICROPHTHALMIA, SYNDROMIC 9Stra6
Dystransthyretinemic Euthyroidal HyperthyroxinemiaTtr
Leber Congenital Amaurosis 14Lrat
Amyloidosis, Hereditary, Transthyretin-RelatedTtr
Pathway Annotations Associated with Genes in the retinoic acid metabolic pathway
Pathway TermsGene Symbols
glycolysis/gluconeogenesis pathwayAldh1a1 , Aldh1a3
pyruvate metabolic pathwayAldh1a1
arginine and proline metabolic pathwayAldh1a1
histidine metabolic pathwayAldh1a1 , Aldh1a3
tyrosine metabolic pathwayAldh1a3
phenylalanine metabolic pathwayAldh1a3
tryptophan metabolic pathwayAldh1a1
fatty acid metabolic pathwayAldh1a1
ascorbate and aldarate metabolic pathwayAldh1a1
propanoate metabolic pathwayAldh1a1
valine, leucine and isoleucine degradation pathwayAldh1a1
lysine degradation pathwayAldh1a1
beta-alanine metabolic pathwayAldh1a1 , Aldh1a3
retinol metabolic pathwayLrat , Cyp26a1 , Aldh1a2 , Dhrs9 , Cyp26b1 , Rdh10 , Cyp26c1 , Rdh7
pentose and glucuronate interconversion pathwayAldh1a1
phase I biotransformation pathway via cytochrome P450Aldh1a3
glycolysis pathwayAldh1a1 , Aldh1a3
gluconeogenesis pathwayAldh1a1 , Aldh1a3
forkhead class A signaling pathwayTtr
retinoic acid metabolic pathwayAldh1a1 , Crabp1 , Rbp1 , Rbp4 , Crabp2 , Lrat , Fabp5 , Cyp26a1 , Aldh1a2 , Dhrs9 , Aldh1a3 , Rdh7 , Cyp26b1 , Rdh10 , Rdh16 , Stra6 , Cyp26c1 , Ttr
retinoid cycle metabolic pathwayRbp1 , Lrat , Rdh10
eicosanoid signaling pathway via peroxisome proliferator-activated receptor gammaFabp5
glycerolipid metabolic pathwayAldh1a1
Phenotype Annotations Associated with Genes in the retinoic acid metabolic pathway
Phenotype TermsGene Symbols
alcohol preferenceAldh1a1

References Associated with the retinoic acid metabolic pathway:

Ontology Path Diagram:

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