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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:glycogen biosynthetic pathway
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Accession:PW:0000532 term browser browse the term
Definition:Those metabolic reactions leading to the biosynthesis of glycogen, a highly branched polysaccharide. Glycogen is the storage form of glucose in the cell; it represents an energy reserve that can be mobilized when and where there is a need for glucose.
Synonyms:related_synonym: Glycogen synthesis;   glycogen biosynthetic process;   glycogenesis
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glycogen biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbe1 1,4-alpha-glucan branching enzyme 1 IDA RGD PMID:6449198 RGD:1642743 NCBI chr11:8,734,806...9,000,226
Ensembl chr11:8,734,820...9,000,210 		JBrowse link
G Gck glucokinase IDA RGD PMID:15138155 RGD:1582633 NCBI chr14:80,785,060...80,829,842
Ensembl chr14:80,785,060...80,826,995 		JBrowse link
G Gsk3a glycogen synthase kinase 3 alpha ISO RGD PMID:17530463 RGD:2306093 NCBI chr 1:80,815,843...80,825,732
Ensembl chr 1:80,815,850...80,825,802 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17530463 RGD:2306093 NCBI chr11:62,498,997...62,648,665
Ensembl chr11:62,504,316...62,648,646 		JBrowse link
G Gyg1 glycogenin 1 IDA RGD PMID:8224611 PMID:10710493 RGD:2303736, RGD:2304070 NCBI chr 2:102,611,888...102,653,916
Ensembl chr 2:102,598,496...102,653,797 		JBrowse link
G Gys1 glycogen synthase 1 ISO
IDA		 RGD PMID:12297270 PMID:6449198 RGD:2304106, RGD:1642743 NCBI chr 1:95,915,443...95,935,292
Ensembl chr 1:95,915,443...95,935,292 		JBrowse link
G Gys2 glycogen synthase 2 IDA
ISO		 RGD PMID:15138155 PMID:12297270 PMID:6449198 RGD:1582633, RGD:2304106, RGD:1642743 NCBI chr 4:175,365,054...175,406,228
Ensembl chr 4:175,365,054...175,406,228 		JBrowse link
G Pgm1 phosphoglucomutase 1 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 5:114,595,298...114,654,728
Ensembl chr 5:114,595,293...114,654,728 		JBrowse link
G Pgm2 phosphoglucomutase 2 ISO RGD PMID:9549096 RGD:2304188 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Pgm3 phosphoglucomutase 3 ISO RGD PMID:9549096 RGD:2304188 NCBI chr 8:87,518,317...87,536,021
Ensembl chr 8:87,517,701...87,536,022 		JBrowse link
G Ppp1ca protein phosphatase 1 catalytic subunit alpha ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327 		JBrowse link
G Ppp1cb protein phosphatase 1 catalytic subunit beta ISO
IDA		 RGD PMID:14715909 PMID:7720853 RGD:2304325, RGD:2304267 NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824 		JBrowse link
G Ppp1cc protein phosphatase 1 catalytic subunit gamma ISO RGD PMID:14715909 RGD:2304325 NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553 		JBrowse link
G Ppp1r3a protein phosphatase 1, regulatory subunit 3A ISO RGD PMID:14715909 RGD:2304325 NCBI chr 4:42,937,353...42,980,195
Ensembl chr 4:42,939,599...42,980,638 		JBrowse link
G Ppp1r3b protein phosphatase 1, regulatory subunit 3B ISO
IDA		 RGD PMID:14715909 PMID:7720853 PMID:11716774 RGD:2304325, RGD:2304267, RGD:2306167 NCBI chr16:56,830,011...56,842,395
Ensembl chr16:56,829,660...56,842,406 		JBrowse link
G Ppp1r3c protein phosphatase 1, regulatory subunit 3C IDA RGD PMID:11716774 RGD:2306167 NCBI chr 1:234,460,958...234,465,961
Ensembl chr 1:234,460,652...234,465,961 		JBrowse link
G Ppp1r3d protein phosphatase 1, regulatory subunit 3D IDA RGD PMID:11716774 RGD:2306167 NCBI chr 3:165,502,384...165,505,455
Ensembl chr 3:165,502,384...165,505,455 		JBrowse link
G Ppp1r3e protein phosphatase 1, regulatory subunit 3E IDA RGD PMID:15752363 RGD:2306166 NCBI chr15:28,348,443...28,349,603
Ensembl chr15:28,347,854...28,349,603 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1854
      carbohydrate metabolic pathway 526
        glycogen metabolic pathway 31
          glycogen biosynthetic pathway 18
            altered glycogen biosynthetic pathway 0
Path 2
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3871
      homeostasis pathway 1773
        glucose homeostasis pathway 344
          glucose utilization pathway 121
            glucose storage pathway 18
              glycogen biosynthetic pathway 18
                altered glycogen biosynthetic pathway 0
paths to the root