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EXPERIMENTAL CONDITION - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:surgical removal
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Accession:XCO:0000026 term browser browse the term
Definition:The process of ablating or extracting all or part of an organ, gland or other body part from an organism as a medical or experimental procedure.


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bilateral adrenalectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Salc1 Saline consumption QTL 1 IDA RGD PMID:15252022 RGD:1302889 NCBI chr 4:44,463,908...148,090,542 JBrowse link
Q Salc2 Saline consumption QTL 2 IDA RGD PMID:15252022 RGD:1302889 NCBI chr19:27,530,207...37,947,399 JBrowse link
left L3-L5 ventral root avulsion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Neudeg1 Neurodegradation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 8:30,188,867...94,457,446 JBrowse link
Q Neudeg2 Neurodegradation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:24,838,710...44,045,280 JBrowse link
Q Neuinf1 Neuroinflammation QTL 1 IDA RGD PMID:14586010 RGD:1358788 NCBI chr 5:154,828,214...166,875,058 JBrowse link
Q Neuinf10 Neuroinflammation QTL 10 IDA RGD PMID:19525015 RGD:2311085 NCBI chr11:31,239,134...78,851,519 JBrowse link
Q Neuinf11 Neuroinflammation QTL 11 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 3:15,005,422...76,927,699 JBrowse link
Q Neuinf12 Neuroinflammation QTL 12 IDA RGD PMID:19525015 RGD:2311085 NCBI chr15:1...55,302,115 JBrowse link
Q Neuinf2 Neuroinflammation QTL 2 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:6,154,377...6,357,896 JBrowse link
Q Neuinf3 Neuroinflammation QTL 3 IDA RGD PMID:14586010 RGD:1358788 NCBI chr10:3,406,320...5,387,112 JBrowse link
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,736,750 JBrowse link
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:9,462,246...58,265,113 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...27,829,089 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:72,224,939...107,211,142 JBrowse link
Q Neuinf8 Neuroinflammation QTL 8 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:57,336,763...151,090,257 JBrowse link
Q Neuinf9 Neuroinflammation QTL 9 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:5,801,990...62,146,030 JBrowse link
left nephrectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coreg1 Compensatory renal growth QTL 1 IDA RGD PMID:10732705 RGD:69708 NCBI chr 6:35,691,618...57,730,540 JBrowse link
Q Coreg2 Compensatory renal growth QTL 2 IDA RGD PMID:10864582 RGD:61071 NCBI chr 4:148,423,102...157,580,971 JBrowse link
partial hepatectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcar1 Hepatocarcinoma resistance QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr10:6,154,182...15,990,232 JBrowse link
Q Hcar10 Hepatocarcinoma resistance QTL 10 IDA RGD PMID:12154055 RGD:629566 NCBI chr 8:40,713,066...82,925,667 JBrowse link
Q Hcar11 Hepatocarcinoma resistance QTL 11 IDA RGD PMID:12154055 RGD:629566 NCBI chr 6:82,523,650...110,548,006 JBrowse link
Q Hcar12 Hepatocarcinoma resistance QTL 12 IDA RGD PMID:12154055 RGD:629566 NCBI chr 3:29,463,235...118,376,539 JBrowse link
Q Hcar13 Hepatocarcinoma resistance QTL 13 IDA RGD PMID:15185337 RGD:737884 NCBI chr 4:1...32,584,199 JBrowse link
Q Hcar14 Hepatocarcinoma resistance QTL 14 IDA RGD PMID:15185337 RGD:737884 NCBI chr18:51,464,733...83,218,561 JBrowse link
Q Hcar2 Hepatocarcinoma resistance QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 4:78,878,504...123,878,504 JBrowse link
Q Hcar3 Hepatocarcinoma resistance QTL 3 IDA RGD PMID:10493520 RGD:619598 NCBI chr 8:54,237,644...99,103,503 JBrowse link
Q Hcar9 Hepatocarcinoma resistance QTL 9 IDA RGD PMID:12154055 RGD:629566 NCBI chr 4:109,866,907...167,139,601 JBrowse link
Q Hcas1 Hepatocarcinoma susceptibility QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr 7:91,412,594...129,807,172 JBrowse link
Q Hcas2 Hepatocarcinoma susceptibility QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 1:5,925,874...115,540,829 JBrowse link
Q Hcas3 Hepatocarcinoma susceptibility QTL 3 IDA RGD PMID:12154055 RGD:629566 NCBI chr 1:144,267,353...222,987,745 JBrowse link
Q Hcas4 Hepatocarcinoma susceptibility QTL 4 IDA RGD PMID:12154055 RGD:629566 NCBI chr16:4,227,609...46,975,965 JBrowse link
Q Hcas5 Hepatocarcinoma susceptibility QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr 1:176,426,412...257,976,495 JBrowse link
Q Hcas6 Hepatocarcinoma susceptibility QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr14:39,057,237...83,368,335 JBrowse link
Q Hcas7 Hepatocarcinoma susceptibility QTL 7 IDA RGD PMID:15185337 RGD:737884 NCBI chr15:2,266,368...46,921,453 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:34,293,282...79,293,282 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:233,948,574...260,522,016 JBrowse link
Q Lnnr3 Liver neoplastic nodule remodeling QTL 3 IDA RGD PMID:15185337 RGD:737884 NCBI chr 2:1...41,244,106 JBrowse link
Q Lnnr4 Liver neoplastic nodule remodeling QTL 4 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:1...42,356,786 JBrowse link
Q Lnnr5 Liver neoplastic nodule remodeling QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:59,874,408...85,581,182 JBrowse link
Q Lnnr6 Liver neoplastic nodule remodeling QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:74,862,117...85,581,182 JBrowse link
partial pancreatectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Insul2 Insulin level QTL 2 IDA RGD PMID:9819774 RGD:69703 NCBI chr20:6,691,706...17,489,458 JBrowse link
Q Niddm37 Non-insulin dependent diabetes mellitus QTL 37 IDA RGD PMID:10218444 RGD:619676 NCBI chr14:11,030,622...95,876,975 JBrowse link
Q Niddm38 Non-insulin dependent diabetes mellitus QTL 38 IDA RGD PMID:10218444 RGD:619676 NCBI chr19:10,323,180...23,069,265 JBrowse link
Q Niddm39 Non-insulin dependent diabetes mellitus QTL 39 IDA RGD PMID:10218444 RGD:619676 NCBI chr 3:94,856,903...159,898,684 JBrowse link
Q Pancm5 Pancreatic morphology QTL 5 IDA RGD PMID:9745032 RGD:69697 NCBI chr14:30,320,092...80,829,842 JBrowse link
right nephrectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pur12 Proteinuria QTL 12 IDA RGD PMID:16390874 RGD:1578625 NCBI chr 2:112,103,657...148,076,632 JBrowse link
Q Pur13 Proteinuria QTL 13 IDA RGD PMID:16390874 RGD:1578625 NCBI chr 3:78,196,190...146,592,722 JBrowse link
Q Pur14 Proteinuria QTL 14 IDA RGD PMID:16390874 RGD:1578625 NCBI chr17:7,979,968...16,317,111 JBrowse link
Q Pur15 Proteinuria QTL 15 IDA RGD PMID:16390874 RGD:1578625 NCBI chr20:8,042,410...17,617,956 JBrowse link
Q Rf52 Renal function QTL 52 IDA RGD PMID:16541022 RGD:1578626 NCBI chr 1:232,156,370...259,647,894 JBrowse link
Q Rf53 Renal function QTL 53 IDA RGD PMID:16541022 RGD:1578626 NCBI chr 3:56,395,968...161,299,569 JBrowse link
Q Rf59 Renal function QTL 59 IDA RGD PMID:21127141 RGD:5684423 NCBI chr 3:140,069,424...146,976,080 JBrowse link
saphenous nerve axotomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pain1 Pain QTL 1 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 2:26,999,571...48,268,661 JBrowse link
Q Pain2 Pain QTL 2 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 7:9,462,246...98,011,544 JBrowse link
sciatic nerve axotomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pain1 Pain QTL 1 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 2:26,999,571...48,268,661 JBrowse link
Q Pain2 Pain QTL 2 IDA RGD PMID:17560719 RGD:1643003 NCBI chr 7:9,462,246...98,011,544 JBrowse link
unilateral nephrectomy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp283 Blood pressure QTL 283 IDA RGD PMID:11053483 RGD:70856
Q Rf3 Renal disease susceptibility QTL 3 IDA RGD PMID:11053483 RGD:70856 NCBI chr 3:107,693,393...152,693,393 JBrowse link
Q Rf4 Renal disease susceptibility QTL 4 IDA RGD PMID:11053483 RGD:70856 NCBI chr14:1...32,754,612 JBrowse link
Q Rf5 Renal disease susceptibility QTL 5 IDA RGD PMID:11053483 RGD:70856
Term paths to the root
Path 1
Term Annotations click to browse term
  experimental condition 2376
    surgical manipulation 84
      surgical removal 58
        adrenalectomy + 2
        hepatectomy + 22
        laminectomy + 0
        myectomy 0
        nephrectomy + 13
        orchiectomy + 0
        ovariectomy + 0
        pancreatectomy + 5
        pinealectomy 0
        removal of maxillary molar crown 0
        sleeve gastrectomy 0
        splenectomy + 0
        surgical avulsion + 14
        surgical denervation + 16
paths to the root