ONTOLOGY REPORT - ANNOTATIONS


Term:organism subdivision trait
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Accession:VT:0100003 term browser browse the term
Definition:Any measurable or observable characteristic of an anatomical structure which is a subpart of the whole organism; the mereological sum of these is the whole organism.


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coat/hair pigmentation trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Coatc1 Coat color QTL1 JBrowse link 14 20,189,386 65,189,386 RGD:2313383
Q Coatc10 Coat color QTL 10 JBrowse link 7 13,952,179 58,952,179 RGD:10755346
Q Coatc11 Coat color QTL 11 JBrowse link 7 24,731,465 69,731,465 RGD:10755346
Q Coatc12 Coat color QTL 12 JBrowse link 7 38,547,706 83,547,706 RGD:10755346
Q Coatc13 Coat color QTL 13 JBrowse link 13 77,694,986 114,033,958 RGD:10755346
Q Coatc14 Coat color QTL 14 JBrowse link 12 1 23,035,872 RGD:10755346
Q Coatc15 Coat color QTL 15 JBrowse link 14 21,457,565 66,457,565 RGD:10755346
Q Coatc16 Coat color QTL 16 JBrowse link 3 130,006,659 175,006,659 RGD:10755346
Q Coatc2 Coat color QTL 2 JBrowse link 14 33,039,912 61,783,215 RGD:2317982
Q Coatc3 Coat color QTL 3 JBrowse link 15 21,021,342 52,831,189 RGD:2317982
Q Coatc4 Coat color QTL 4 JBrowse link 17 3,336,972 24,030,841 RGD:2317982
Q Coatc5 Coat color QTL 5 JBrowse link 17 32,055,882 77,922,655 RGD:2317982
Q Coatc6 Coat color QTL 6 JBrowse link 2 10,555,275 55,555,275 RGD:10755346
Q Coatc7 Coat color QTL 7 JBrowse link 2 31,272,379 76,272,379 RGD:10755346
Q Coatc8 Coat color QTL 8 JBrowse link 2 35,133,202 80,133,202 RGD:10755346
Q Coatc9 Coat color QTL 9 JBrowse link 7 9,758,045 54,758,045 RGD:10755346
femur mineral mass term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bmd1 Bone mineral density QTL 1 JBrowse link 1 254,393 86,904,217 RGD:1553896
Q Bmd10 Bone mineral density QTL 10 JBrowse link 2 9,444,679 68,866,454 RGD:1578307
Q Bmd11 Bone mineral density QTL 11 JBrowse link 4 24,631,874 69,631,874 RGD:1578307
Q Bmd12 Bone mineral density QTL 12 JBrowse link 4 137,171,018 182,171,018 RGD:1578307
Q Bmd13 Bone mineral density QTL 13 JBrowse link 5 107,119,214 152,119,214 RGD:1578307
Q Bmd14 Bone mineral density QTL 14 JBrowse link 6 6,161,722 76,002,731 RGD:1578307
Q Bmd15 Bone mineral density QTL 15 JBrowse link 7 12,687,850 67,801,690 RGD:1578307
Q Bmd16 Bone mineral density QTL 16 JBrowse link 10 100,155,035 110,992,275 RGD:1578307
Q Bmd17 Bone mineral density QTL 17 JBrowse link 15 26,381,041 106,550,657 RGD:1578307
Q Bmd18 Bone mineral density QTL 18 JBrowse link 15 26,381,041 106,550,657 RGD:1578307
Q Bmd19 Bone mineral density QTL 19 JBrowse link 2 43,141,290 114,164,944 RGD:2293456
Q Bmd20 Bone mineral density QTL 20 JBrowse link 6 13,122,958 21,165,729 RGD:2293456
Q Bmd21 Bone mineral density QTL 21 JBrowse link 7 55,495,689 100,495,689 RGD:2293456
Q Bmd22 Bone mineral density QTL 22 JBrowse link 10 51,289,203 84,596,393 RGD:2293456
Q Bmd23 Bone mineral density QTL 23 JBrowse link 18 53,033,494 68,524,999 RGD:2293456
Q Bmd24 Bone mineral density QTL 24 JBrowse link 2 43,141,290 114,164,944 RGD:2293456
Q Bmd25 Bone mineral density QTL 25 JBrowse link 10 51,289,203 84,596,393 RGD:2293456
Q Bmd26 Bone mineral density QTL 26 JBrowse link 12 17,960,865 38,409,001 RGD:2293456
Q Bmd27 Bone mineral density QTL 27 JBrowse link 1 244,401,175 264,636,028 RGD:2293456
Q Bmd28 Bone mineral density QTL 28 JBrowse link 17 4,716,067 27,691,136 RGD:2293456
Q Bmd3 Bone mineral density QTL 3 JBrowse link 8 44,458,129 118,087,517 RGD:1553896
Q Bmd30 Bone mineral density QTL 30 JBrowse link 10 51,289,203 84,596,393 RGD:2293456
Q Bmd40 Bone mineral density QTL 40 JBrowse link 1 221,901,238 266,901,238 RGD:2300109
Q Bmd41 Bone mineral density QTL 41 JBrowse link 1 189,170,900 234,170,900 RGD:2300109
Q Bmd43 Bone mineral density QTL 43 JBrowse link 1 189,170,900 234,170,900 RGD:2300109
Q Bmd46 Bone mineral density QTL 46 JBrowse link 2 91,664,872 136,664,872 RGD:2300109
Q Bmd47 Bone mineral density QTL 47 JBrowse link 2 20,641,371 65,641,371 RGD:2300109
Q Bmd48 Bone mineral density QTL 48 JBrowse link 2 194,378,622 239,378,622 RGD:2300109
Q Bmd50 Bone mineral density QTL 50 JBrowse link 4 61,975,371 106,975,371 RGD:2300109
Q Bmd51 Bone mineral density QTL 51 JBrowse link 6 1 35,623,029 RGD:2300109
Q Bmd52 Bone mineral density QTL 52 JBrowse link 6 1 35,623,029 RGD:2300109
Q Bmd54 Bone mineral density QTL 54 JBrowse link 7 55,495,689 100,495,689 RGD:2300109
Q Bmd55 Bone mineral density QTL 55 JBrowse link 8 83,894,304 128,894,304 RGD:2300109
Q Bmd56 Bone mineral density QTL 56 JBrowse link 8 104,682,575 133,307,652 RGD:2300109
Q Bmd57 Bone mineral density QTL 57 JBrowse link 10 73,008,136 112,626,471 RGD:2300109
Q Bmd6 Bone mineral density QTL 6 JBrowse link 1 254,393 43,579,402 RGD:1578307
Q Bmd60 Bone mineral density QTL 60 JBrowse link 14 1 27,597,761 RGD:2300109
Q Bmd61 Bone mineral density QTL 61 JBrowse link 14 1 27,597,761 RGD:2300109
Q Bmd63 Bone mineral density QTL 63 JBrowse link 15 17,249,641 62,249,641 RGD:2300109
Q Bmd65 Bone mineral density QTL 65 JBrowse link 18 30,533,614 75,533,614 RGD:2300109
Q Bmd67 Bone mineral density QTL 67 JBrowse link 18 1 38,195,967 RGD:2300109
Q Bmd68 Bone mineral density QTL 68 JBrowse link 20 26,608,843 56,205,956 RGD:2300109
Q Bmd7 Bone mineral density QTL 7 JBrowse link 1 254,393 43,579,402 RGD:1578307
Q Bmd8 Bone mineral density QTL 8 JBrowse link 1 49,578,577 94,578,577 RGD:1578307
Q Bmd88 Bone mineral density QTL 88 JBrowse link 9 27,486,036 63,264,281 RGD:2293456
Q Bmd9 Bone mineral QTL density 9 JBrowse link 2 9,444,679 49,615,930 RGD:1578307
femur morphology trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss10 Bone structure and strength QTL 10 JBrowse link 1 49,578,577 169,852,184 RGD:1578307
Q Bss11 Bone structure and strength QTL 11 JBrowse link 2 118,446,646 227,707,979 RGD:1578307
Q Bss111 Bone structure and strength QTL 111 JBrowse link 2 228,712,271 266,435,125 RGD:1549683
Q Bss112 Bone structure and strength QTL 112 JBrowse link 5 112,279,412 157,279,412 RGD:1549683
Q Bss113 Bone structure and strength QTL 113 JBrowse link 3 12,236,221 15,217,668 RGD:11528619
Q Bss115 Bone structure and strength QTL 115 JBrowse link 8 87,295,037 88,257,646 RGD:11528619
Q Bss116 Bone structure and strength QTL 116 JBrowse link 10 45,114,283 45,744,081 RGD:11528619
Q Bss12 Bone structure and strength QTL 12 JBrowse link 4 56,092,756 101,092,756 RGD:1578307
Q Bss120 Bone structure and strength QTL 120 JBrowse link 17 81,940,459 82,621,764 RGD:11528619
Q Bss121 Bone structure and strength QTL 121 JBrowse link 20 35,276,651 37,867,728 RGD:11528619
Q Bss14 Bone structure and strength QTL 14 JBrowse link 4 87,136,446 132,136,446 RGD:1578307
Q Bss16 Bone structure and strength QTL 16 JBrowse link 6 6,161,722 76,002,731 RGD:1578307
Q Bss17 Bone structure and strength QTL 17 JBrowse link 9 1,907,834 15,555,026 RGD:1578307
Q Bss19 Bone structure and strength QTL 19 JBrowse link 15 26,381,041 106,550,657 RGD:1578307
Q Bss20 Bone structure and strength QTL 20 JBrowse link 18 15,695,872 87,080,053 RGD:1578307
Q Bss21 Bone structure and strength QTL 21 JBrowse link 18 15,695,872 87,080,053 RGD:1578307
Q Bss22 Bone structure and strength QTL 22 JBrowse link 1 189,170,900 234,170,900 RGD:2293455
Q Bss23 Bone structure and strength QTL 23 JBrowse link 6 1 43,665,660 RGD:2293455
Q Bss24 Bone structure and strength QTL 24 JBrowse link 7 55,495,689 100,495,689 RGD:2293455
Q Bss25 Bone structure and strength QTL 25 JBrowse link 10 73,008,136 112,626,471 RGD:2293455
Q Bss26 Bone structure and strength QTL 26 JBrowse link 13 71,230,858 114,033,958 RGD:2293455
Q Bss27 Bone structure and strength QTL 27 JBrowse link 1 189,170,900 234,170,900 RGD:2293455
Q Bss28 Bone structure and strength QTL 28 JBrowse link 6 1 43,665,660 RGD:2293455
Q Bss29 Bone structure and strength QTL 29 JBrowse link 15 17,249,641 62,249,641 RGD:2293455
Q Bss3 Bone structure and strength QTL 3 JBrowse link 4 109,636,356 154,636,356 RGD:1549683
Q Bss9 Bone structure and strength QTL 9 JBrowse link 1 254,393 43,579,402 RGD:1578307
femur size trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bmd29 Bone mineral density QTL 29 JBrowse link 7 55,495,689 100,495,689 RGD:2293456
Q Bmd31 Bone mineral density QTL 31 JBrowse link 17 4,716,067 27,691,136 RGD:2293456
Q Bmd38 Bone mineral density QTL 38 JBrowse link 5 8,632,285 53,632,285 RGD:2293456
Q Bmd90 Bone mineral density QTL 90 JBrowse link 10 51,289,203 84,596,393 RGD:2293456
Q Bmd91 Bone mineral density QTL 91 JBrowse link 9 27,486,155 88,333,183 RGD:2293456
femur width term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss15 Bone structure and strength QTL 15 JBrowse link 4 87,136,446 132,136,446 RGD:1578307
Q Bss18 Bone structure and strength QTL 18 JBrowse link 10 100,155,035 110,992,275 RGD:1578307
forelimb integrity trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Plsm1 Polydactyly-luxate syndrome (PLS) morphotypes QTL 1 JBrowse link 4 1 25,545,519 RGD:632346
Q Plsm4 Polydactyly-luxate syndrome (PLS) morphotypes QTL 4 JBrowse link 11 57,858,810 90,463,843 RGD:632346
hindlimb integrity trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Plsm2 Polydactyly-luxate syndrome (PLS) morphotypes QTL 2 JBrowse link 4 131,834,282 176,834,282 RGD:632346
hypodermis integrity trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Cari1 Carrageenan-induced inflammation QTL 1 JBrowse link 10 55,678,976 112,626,471 RGD:69693
Q Cari2 Carrageenan-induced inflammation QTL 2 JBrowse link 2 147,522,550 217,498,710 RGD:69693
lens clarity trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Arrd3 Age-related retinal degeneration QTL 3 JBrowse link 1 202,571,665 264,802,994 RGD:7794750
Q Lecl1 Lens clarity QTL 1 JBrowse link 8 21,464,919 91,140,553 RGD:68701
Q Lecl2 Lens clarity QTL 2 JBrowse link 15 39,480,797 62,596,410 RGD:68701
long bone metaphysis morphology trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss59 Bone structure and strength QTL 59 JBrowse link 5 3,251,329 26,252,076 RGD:2312767
Q Bss65 Bone structure and strength QTL 65 JBrowse link 15 68,366,508 81,255,430 RGD:2312767
Q Bss71 Bone structure and strength QTL 71 JBrowse link 1 124,090,312 169,090,312 RGD:2312767
Q Bss85 Bone structure and strength QTL 85 JBrowse link 18 14,678,852 59,678,852 RGD:2312767
retinal layer morphology trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Arrd1 Age-related retinal degeneration QTL 1 JBrowse link 1 106,002,252 202,571,904 RGD:7794750
Q Arrd2 Age-related retinal degeneration QTL 2 JBrowse link 1 202,571,665 264,802,994 RGD:7794750
subcutaneous adipose mass term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Scfw1 Subcutaneous fat weight QTL 1 JBrowse link 2 197,253,963 242,253,963 RGD:8694157
Q Scfw2 Subcutaneous fat weight QTL 2 JBrowse link 4 1 28,352,196 RGD:8694157
Q Scfw3 Subcutaneous fat weight QTL 3 JBrowse link 6 1 42,388,212 RGD:8694157
Q Scfw4 Subcutaneous fat weight QTL 4 RGD:8694157
Q Scfw5 Subcutaneous fat weight QTL 5 JBrowse link 9 1 40,383,872 RGD:8694157
Q Scfw6 Subcutaneous fat weight QTL 6 RGD:8694157
tibia area term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss100 Bone structure and strength QTL 100 JBrowse link 8 54,065,044 89,058,369 RGD:5684953
Q Bss104 Bone structure and strength QTL 104 JBrowse link X 121,442,246 134,627,946 RGD:5684953
Q Bss54 Bone structure and strength QTL 54 JBrowse link 1 43,579,208 126,240,667 RGD:2312767
Q Bss61 Bone structure and strength QTL 61 JBrowse link 10 5,460,119 21,524,070 RGD:2312767
Q Bss67 Bone structure and strength QTL 67 JBrowse link 1 11,314,489 83,657,083 RGD:2312767
Q Bss72 Bone structure and strength QTL 72 JBrowse link 3 28,136,728 51,687,917 RGD:2312767
Q Bss86 Bone structure and strength QTL 86 JBrowse link 1 53,851,348 83,657,083 RGD:4889918
Q Bss87 Bone structure and strength QTL 87 JBrowse link 1 53,851,348 83,657,083 RGD:4889918
Q Bss90 Bone structure and strength QTL 90 JBrowse link 9 92,741,297 98,606,834 RGD:4889918
Q Bss91 Bone structure and strength QTL 91 JBrowse link 10 85,513,822 95,638,337 RGD:4889918
Q Bss92 Bone structure and strength QTL 92 JBrowse link 14 87,458,772 106,641,756 RGD:4889918
Q Bss94 Bone structure and strength QTL 94 JBrowse link 1 49,547,328 83,657,083 RGD:4889918
Q Bss95 Bone structure and strength QTL 95 JBrowse link 3 1 37,891,710 RGD:4889918
Q Bss99 Bone structure and strength QTL 99 RGD:5684953
tibia length term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss51 Bone structure and strength QTL 51 JBrowse link 1 1 34,993,530 RGD:2312767
Q Bss53 Bone structure and strength QTL 53 JBrowse link 1 43,579,208 126,240,667 RGD:2312767
Q Bss60 Bone structure and strength QTL 60 JBrowse link 8 54,065,044 89,058,369 RGD:2312767
Q Bss66 Bone structure and strength QTL 66 JBrowse link 1 11,314,489 83,657,083 RGD:2312767
Q Lmblg1 Limb length QTL 1 JBrowse link 1 161,784,169 219,232,156 RGD:1302893
Q Lmblg2 Limb length QTL 2 JBrowse link 17 3,336,972 73,413,148 RGD:1302893
Q Plsm3 Polydactyly-luxate syndrome (PLS) morphotypes QTL 3 JBrowse link 7 1 37,009,673 RGD:632346
tibia mineral mass term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bmd69 Bone mineral density QTL 69 JBrowse link 1 1 34,993,530 RGD:2312767
Q Bmd70 Bone mineral density QTL 70 JBrowse link 1 43,579,208 126,240,667 RGD:2312767
Q Bmd71 Bone mineral density QTL 71 JBrowse link 10 5,460,119 21,524,070 RGD:2312767
Q Bmd72 Bone mineral density QTL 72 JBrowse link 1 11,314,489 83,657,083 RGD:2312767
Q Bmd73 Bone mineral density QTL 73 JBrowse link 1 11,314,489 83,657,083 RGD:2312767
Q Bmd74 Bone mineral density QTL 74 JBrowse link 1 83,656,882 126,240,667 RGD:2312767
Q Bmd75 Bone mineral density QTL 75 JBrowse link 2 231,224,020 254,132,424 RGD:2312767
Q Bmd76 Bone mineral density QTL 76 JBrowse link 3 28,136,728 51,687,917 RGD:2312767
Q Bmd77 Bone mineral density QTL 77 JBrowse link 3 28,136,728 51,687,917 RGD:2312767
Q Bmd78 Bone mineral density QTL 78 JBrowse link 5 150,360,936 167,946,134 RGD:2312767
Q Bmd79 Bone mineral density QTL 79 JBrowse link 7 103,815,550 126,525,386 RGD:2312767
Q Bmd80 Bone mineral density QTL 80 JBrowse link 10 19,958,696 21,524,070 RGD:2312767
Q Bmd81 Bone mineral density QTL 81 JBrowse link 3 39,773,247 51,687,917 RGD:4889918
Q Bmd82 Bone mineral density QTL 82 JBrowse link 2 60,325,352 106,432,915 RGD:5684953
Q Bmd83 Bone mineral density QTL 82 RGD:5684953
Q Bmd84 Bone mineral density QTL 84 JBrowse link 8 46,588,437 54,065,241 RGD:5684953
Q Bmd85 Bone mineral density QTL 85 JBrowse link 2 60,325,352 106,432,915 RGD:5684953
Q Bmd86 Bone mineral density QTL 86 JBrowse link 4 55,324,857 79,575,658 RGD:5684953
Q Bmd87 Bone mineral density QTL 87 JBrowse link 4 55,324,857 79,575,658 RGD:5684953
Q Bmd92 Bone mineral density QTL 92 JBrowse link 9 95,430,880 97,679,852 RGD:11353859
tibia size trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Bss55 Bone structure and strength QTL 55 JBrowse link 1 43,579,208 126,240,667 RGD:2312767
Q Bss56 Bone structure and strength QTL 56 JBrowse link 1 43,579,208 126,240,667 RGD:2312767
Q Bss62 Bone structure and strength QTL 62 JBrowse link 10 5,460,119 21,524,070 RGD:2312767
Q Bss68 Bone structure and strength QTL 68 JBrowse link 1 11,314,489 83,657,083 RGD:2312767
Q Bss73 Bone structure and strength QTL 73 JBrowse link 3 28,136,728 51,687,917 RGD:2312767
Q Bss76 Bone structure and strength QTL 76 JBrowse link 8 33,558,660 89,058,369 RGD:2312767
Q Bss77 Bone structure and strength QTL 77 JBrowse link 8 33,558,660 89,058,369 RGD:2312767
Q Bss79 Bone structure and strength QTL 79 JBrowse link 10 65,992,275 110,992,275 RGD:2312767
Q Bss82 Bone structure and strength QTL 82 JBrowse link 14 40,315,610 85,315,610 RGD:2312767
Q Bss83 Bone structure and strength QTL 83 JBrowse link 14 40,315,610 85,315,610 RGD:2312767
Q Bss88 Bone structure and strength QTL 88 RGD:4889918
Q Bss89 Bone structure and strength QTL 89 JBrowse link 8 54,065,044 89,058,369 RGD:4889918
Q Bss93 Bone structure and strength QTL 93 JBrowse link 17 27,690,959 63,994,435 RGD:4889918
Q Bss96 Bone structure and strength QTL 96 JBrowse link 4 55,324,857 79,575,658 RGD:4889918
Q Bss97 Bone structure and strength QTL 97 JBrowse link 4 55,324,857 79,575,658 RGD:4889918
uvea integrity trait term browser
Symbol Object Name JBrowse Chr Start Stop Reference
Q Eau1 Experimental allergic uveoretinitis QTL 1 JBrowse link 4 70,773,471 132,455,556 RGD:61073
Q Eau2 Experimental allergic uveoretinitis QTL 2 JBrowse link 12 10,256,890 31,723,732 RGD:61073
Q Eau3 Experimental allergic uveoretinitis QTL 3 JBrowse link 10 35,669,465 46,851,407 RGD:61073
Q Eau4 Experimental allergic uveoretinitis QTL 4 JBrowse link 3 146,232,777 177,699,992 RGD:2296064
Q Eau5 Experimental allergic uveoretinitis QTL 5 JBrowse link 2 217,498,545 254,132,424 RGD:2296064
Q Eau6 Experimental allergic uveoretinitis QTL 6 JBrowse link 7 93,726,906 138,726,906 RGD:2296064
Q Eau7 Experimental allergic uveoretinitis QTL 7 JBrowse link 10 35,669,573 36,185,929 RGD:2296064
Q Eau8 Experimental allergic uveoretinitis QTL 8 JBrowse link 19 21,407,787 62,275,575 RGD:2296064
Q Eau9 Experimental allergic uveoretinitis QTL 9 JBrowse link 10 68,305,037 85,514,044 RGD:2296064

Term paths to the root
Path 1
Term Annotations click to browse term
  Trait 2379
    organism subdivision trait 180
      head trait + 14
      hip width 0
      rump trait + 0
      surface structure trait + 180
      thorax trait + 0
paths to the root