Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:femur morphology trait
go back to main search page
Accession:VT:0000559 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the long bone of the thigh.


show annotations for term's descendants           Sort by:
femur morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss10 Bone structure and strength QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,393,172...159,356,837 JBrowse link
Q Bss11 Bone structure and strength QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:114,837,527...211,674,221 JBrowse link
Q Bss111 Bone structure and strength QTL 111 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:211,744,537...249,053,267 JBrowse link
Q Bss112 Bone structure and strength QTL 112 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:106,906,205...151,906,205 JBrowse link
Q Bss113 Bone structure and strength QTL 113 IDA RGD PMID:26297441 RGD:11528619
Q Bss115 Bone structure and strength QTL 115 IDA RGD PMID:26297441 RGD:11528619
Q Bss116 Bone structure and strength QTL 116 IDA RGD PMID:26297441 RGD:11528619
Q Bss12 Bone structure and strength QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:60,220,938...105,220,938 JBrowse link
Q Bss120 Bone structure and strength QTL 120 IDA RGD PMID:26297441 RGD:11528619
Q Bss121 Bone structure and strength QTL 121 IDA RGD PMID:26297441 RGD:11528619
Q Bss14 Bone structure and strength QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,327,165...132,327,165 JBrowse link
Q Bss16 Bone structure and strength QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:11,735,669...72,593,685 JBrowse link
Q Bss17 Bone structure and strength QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 9:3,368,652...13,533,896 JBrowse link
Q Bss19 Bone structure and strength QTL 19 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bss20 Bone structure and strength QTL 20 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
Q Bss21 Bone structure and strength QTL 21 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:11,791,518...83,218,561 JBrowse link
Q Bss22 Bone structure and strength QTL 22 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss23 Bone structure and strength QTL 23 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss24 Bone structure and strength QTL 24 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bss25 Bone structure and strength QTL 25 IDA RGD PMID:18158281 RGD:2293455 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bss26 Bone structure and strength QTL 26 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:65,103,704...106,807,694 JBrowse link
Q Bss27 Bone structure and strength QTL 27 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bss28 Bone structure and strength QTL 28 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...42,487,980 JBrowse link
Q Bss29 Bone structure and strength QTL 29 IDA RGD PMID:18158281 RGD:2293455 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bss3 Bone structure and strength QTL 3 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,827,074...154,827,074 JBrowse link
Q Bss9 Bone structure and strength QTL 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
femur mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd1 Bone mineral density QTL 1 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 1:509,108...86,060,548 JBrowse link
Q Bmd10 Bone mineral density QTL 10 IDA RGD PMID:16461031 RGD:1578307
Q Bmd11 Bone mineral density QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:90,850,165...135,850,165 JBrowse link
Q Bmd12 Bone mineral density QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:135,699,135...180,699,135 JBrowse link
Q Bmd13 Bone mineral density QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 5:103,689,353...148,689,353 JBrowse link
Q Bmd14 Bone mineral density QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:11,735,669...72,593,685 JBrowse link
Q Bmd15 Bone mineral density QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 7:9,866,467...60,460,686 JBrowse link
Q Bmd16 Bone mineral density QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:96,703,043...107,057,807 JBrowse link
Q Bmd17 Bone mineral density QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bmd18 Bone mineral density QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:22,806,240...98,288,169 JBrowse link
Q Bmd19 Bone mineral density QTL 19 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,162,366...111,362,592 JBrowse link
Q Bmd20 Bone mineral density QTL 20 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 6:5,074,497...19,988,050 JBrowse link
Q Bmd21 Bone mineral density QTL 21 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd22 Bone mineral density QTL 22 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd23 Bone mineral density QTL 23 IDA RGD PMID:18282130 RGD:2293456 NCBI chr18:51,464,733...63,636,873 JBrowse link
Q Bmd24 Bone mineral density QTL 24 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,162,366...111,362,592 JBrowse link
Q Bmd25 Bone mineral density QTL 25 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd26 Bone mineral density QTL 26 IDA RGD PMID:18282130 RGD:2293456 NCBI chr12:15,872,653...32,974,238 JBrowse link
Q Bmd27 Bone mineral density QTL 27 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 1:224,054,293...243,747,962 JBrowse link
Q Bmd28 Bone mineral density QTL 28 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,354,487...27,028,127 JBrowse link
Q Bmd3 Bone mineral density QTL 3 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 8:40,952,565...123,900,184 JBrowse link
Q Bmd30 Bone mineral density QTL 30 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd40 Bone mineral density QTL 40 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:201,554,356...246,554,356 JBrowse link
Q Bmd41 Bone mineral density QTL 41 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bmd43 Bone mineral density QTL 43 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:171,629,477...216,629,477 JBrowse link
Q Bmd46 Bone mineral density QTL 46 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:88,862,519...133,862,519 JBrowse link
Q Bmd47 Bone mineral density QTL 47 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:20,662,448...65,662,448 JBrowse link
Q Bmd48 Bone mineral density QTL 48 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:179,335,906...224,335,906 JBrowse link
Q Bmd50 Bone mineral density QTL 50 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 4:60,928,534...105,928,534 JBrowse link
Q Bmd51 Bone mineral density QTL 51 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...27,574,569 JBrowse link
Q Bmd52 Bone mineral density QTL 52 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...27,574,569 JBrowse link
Q Bmd54 Bone mineral density QTL 54 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd55 Bone mineral density QTL 55 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:76,468,691...121,468,691 JBrowse link
Q Bmd56 Bone mineral density QTL 56 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:95,718,998...123,900,184 JBrowse link
Q Bmd57 Bone mineral density QTL 57 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:69,738,412...107,211,142 JBrowse link
Q Bmd6 Bone mineral density QTL 6 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
Q Bmd60 Bone mineral density QTL 60 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...26,541,967 JBrowse link
Q Bmd61 Bone mineral density QTL 61 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...26,541,967 JBrowse link
Q Bmd63 Bone mineral density QTL 63 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:11,111,142...56,111,142 JBrowse link
Q Bmd65 Bone mineral density QTL 65 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:28,964,853...73,964,853 JBrowse link
Q Bmd67 Bone mineral density QTL 67 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:1...34,291,613 JBrowse link
Q Bmd68 Bone mineral density QTL 68 IDA RGD PMID:18707222 RGD:2300109 NCBI chr20:25,106,722...54,435,887 JBrowse link
Q Bmd7 Bone mineral density QTL 7 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:509,108...43,284,926 JBrowse link
Q Bmd8 Bone mineral density QTL 8 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,393,172...94,393,172 JBrowse link
Q Bmd88 Bone mineral density QTL 88 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:23,754,024...58,157,242 JBrowse link
Q Bmd9 Bone mineral QTL density 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:11,852,062...49,003,364 JBrowse link
femur size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd29 Bone mineral density QTL 29 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:47,651,439...92,651,439 JBrowse link
Q Bmd31 Bone mineral density QTL 31 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,354,487...27,028,127 JBrowse link
Q Bmd38 Bone mineral density QTL 38 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 5:8,948,228...53,948,228 JBrowse link
Q Bmd90 Bone mineral density QTL 90 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:49,444,551...81,709,989 JBrowse link
Q Bmd91 Bone mineral density QTL 91 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:23,754,144...83,851,531 JBrowse link
femur width term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss15 Bone structure and strength QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,327,165...132,327,165 JBrowse link
Q Bss18 Bone structure and strength QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:96,703,043...107,057,807 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2888
    organism subdivision trait 211
      surface structure trait 211
        surface structure morphology trait 211
          appendage morphology trait 156
            limb morphology trait 156
              hindlimb morphology trait 150
                hindlimb long bone morphology trait 149
                  femur morphology trait 86
                    femur curvature trait 0
                    femur size trait + 59
Path 2
Term Annotations click to browse term
  vertebrate trait 2888
    organ system trait 1978
      connective tissue trait 440
        connective tissue morphology trait 380
          bone morphology trait 177
            appendicular skeleton morphology trait 153
              skeleton extremities morphology trait 153
                long bone morphology trait 153
                  hindlimb long bone morphology trait 149
                    femur morphology trait 86
                      femur curvature trait 0
                      femur size trait + 59
paths to the root