ONTOLOGY REPORT - ANNOTATIONS

Term:Pneumonia, Bacterial
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Accession:RDO:0006372 term browser browse the term
Definition:Inflammation of the lung parenchyma that is caused by bacterial infections.
Synonyms:exact_synonym: Bacterial Pneumonias
 primary_id: MESH:D018410

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Pneumonia, Bacterial term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Abcc1 ATP-binding cassette, subfamily C (CFTR/MRP), member 1 GBrowse link ISS 10 452,239 575,705 RGD:5128828 RGD
G Ager advanced glycosylation end product-specific receptor GBrowse link Severity ISS 20 4,250,613 4,253,540 RGD:6767559 RGD
G C3 complement component 3 ISS RGD:5129508 RGD
G C3ar1 complement component 3a receptor 1 GBrowse link ISS 4 159,326,402 159,333,433 RGD:5129690 RGD
G C5 complement component 5 GBrowse link ISS 3 14,011,115 14,102,744 RGD:5129707 RGD
G Cat catalase GBrowse link IED 3 88,654,077 88,686,212 RGD:5130748 RGD
G Ccl19 chemokine (C-C motif) ligand 19 GBrowse link ISS 5 59,221,738 59,223,682 RGD:5130918 RGD
G Ccl2 chemokine (C-C motif) ligand 2 GBrowse link ISS 10 70,256,263 70,258,061 RGD:4891443 RGD
G Ccl21 chemokine (C-C motif) ligand 21 GBrowse link ISS 5 59,238,897 59,240,001 RGD:5130918 RGD
G Ccl4 chemokine (C-C motif) ligand 4 GBrowse link ISS 10 71,759,643 71,761,115 RGD:5130905 RGD
G Ccr2 chemokine (C-C motif) receptor 2 GBrowse link ISS 8 128,892,784 128,893,905 RGD:4891443 RGD
G Ccr7 chemokine (C-C motif) receptor 7 GBrowse link ISS 10 87,925,093 87,936,325 RGD:5130918 RGD
G Cd14 CD14 molecule GBrowse link ISS 18 29,374,593 29,376,190 RGD:4144197 RGD
G Cd40 CD40 molecule, TNF receptor superfamily member 5 GBrowse link ISS 3 156,092,602 156,107,427 RGD:5132268 RGD
G Cd80 Cd80 molecule GBrowse link ISS 11 64,045,358 64,070,072 RGD:4892562 RGD
G Chuk conserved helix-loop-helix ubiquitous kinase GBrowse link ISS 1 249,122,845 249,158,369 RGD:5133701 RGD
G Csf3 colony stimulating factor 3 (granulocyte) GBrowse link Disease_progression ISS 10 87,473,990 87,476,365 RGD:5133733 RGD
G Csf3r colony stimulating factor 3 receptor (granulocyte) GBrowse link Disease_progression ISS 5 145,374,596 145,394,045 RGD:5133739 RGD
G Cxcl1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) GBrowse link IEP 14 18,690,339 18,692,118 RGD:5135234 RGD
G Cxcl1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) GBrowse link ISS 14 18,690,339 18,692,118 RGD:5135062 RGD
G Cxcl10 chemokine (C-X-C motif) ligand 10 GBrowse link Severity ISS 14 17,265,986 17,268,183 RGD:5135458 RGD
G Cxcl10 chemokine (C-X-C motif) ligand 10 GBrowse link ISS 14 17,265,986 17,268,183 RGD:5135459 RGD
G Cxcl11 chemokine (C-X-C motif) ligand 11 GBrowse link ISS 14 17,250,648 17,253,423 RGD:5135459 RGD
G Cxcl2 chemokine (C-X-C motif) ligand 2 GBrowse link IEP 14 18,677,129 18,679,175 RGD:5135234 RGD
G Cxcl2 chemokine (C-X-C motif) ligand 2 GBrowse link Severity ISS 14 18,677,129 18,679,175 RGD:5135065 RGD
G Cxcl2 chemokine (C-X-C motif) ligand 2 GBrowse link ISS 14 18,677,129 18,679,175 RGD:5135062 RGD
G Cxcl3 chemokine (C-X-C motif) ligand 3 GBrowse link IEP 14 18,767,306 18,787,340 RGD:5135234 RGD
G Cxcl5 chemokine (C-X-C motif) ligand 5 GBrowse link ISS 14 18,825,357 18,826,269 RGD:4145490 RGD
G Cxcl9 chemokine (C-X-C motif) ligand 9 GBrowse link ISS 14 17,284,085 17,288,996 RGD:5135459 RGD
G Cxcr3 chemokine (C-X-C motif) receptor 3 GBrowse link ISS X 89,794,276 89,796,927 RGD:5135459 RGD
G Cyp2j4 cytochrome P450, family 2, subfamily j, polypeptide 4 GBrowse link IEP 5 116,702,370 116,729,722 RGD:1625385 RGD
G Defb4 defensin beta 4 GBrowse link ISS 16 75,442,005 75,445,196 RGD:4892266 RGD
G F2 coagulation factor II GBrowse link IEP 3 76,005,318 76,018,603 RGD:6893486 RGD
G Fcgr2a Fc fragment of IgG, low affinity IIa, receptor GBrowse link ISS 13 86,898,651 86,911,743 RGD:5129707 RGD
G Icam1 intercellular adhesion molecule 1 GBrowse link ISS 8 20,040,177 20,051,939 RGD:4145490 RGD
G Ifnar1 interferon (alpha, beta and omega) receptor 1 GBrowse link ISS 11 31,454,789 31,478,449 RGD:5490274 RGD
G Il15 interleukin 15 GBrowse link ISS 19 27,487,268 27,498,973 RGD:5000754 RGD
G Il17a interleukin 17A GBrowse link ISS 9 19,454,979 19,458,467 RGD:4889153 RGD
G Il18 interleukin 18 GBrowse link ISS 8 53,936,584 53,943,228 RGD:4889913 RGD
G Il1b interleukin 1 beta GBrowse link ISS 3 116,964,422 116,970,867 RGD:4143205 RGD
G Il1rl1 interleukin 1 receptor-like 1 GBrowse link ISS 9 39,577,879 39,624,781 RGD:5144223 RGD
G Il1rn interleukin 1 receptor antagonist GBrowse link ISS 3 2,607,800 2,613,216 RGD:4143205 RGD
G Il1rn interleukin 1 receptor antagonist GBrowse link ISS 3 2,607,800 2,613,216 RGD:4143206 RGD
G Il22 interleukin 22 GBrowse link ISS 7 57,517,321 57,521,786 RGD:5147404 RGD
G Irf1 interferon regulatory factor 1 GBrowse link ISS 10 39,220,600 39,227,602 RGD:5128725 RGD
G Irf3 interferon regulatory factor 3 GBrowse link ISS 1 95,470,284 95,475,078 RGD:4891951 RGD
G Itgb3 integrin, beta 3 IEP RGD:4993468 RGD
G Lep leptin GBrowse link ISS 4 55,943,837 55,945,938 RGD:5128871 RGD
G Mbl2 mannose-binding lectin (protein C) 2 GBrowse link ISS 1 233,978,931 233,983,824 RGD:4889477 RGD
G Mc1r melanocortin 1 receptor ISS RGD:5687324 RGD
G Mmp9 matrix metallopeptidase 9 GBrowse link ISS 3 155,985,473 155,993,433 RGD:5130727 RGD
G Mmp9 matrix metallopeptidase 9 GBrowse link ISS 3 155,985,473 155,993,433 RGD:5129533 RGD
G Mpo myeloperoxidase GBrowse link ISS 10 76,085,872 76,097,012 RGD:5130992 RGD
G Nod1 nucleotide-binding oligomerization domain containing 1 GBrowse link ISS 4 83,398,809 83,449,207 RGD:5131449 RGD
G Nod2 nucleotide-binding oligomerization domain containing 2 GBrowse link ISS 19 19,662,337 19,697,341 RGD:5131449 RGD
G Pdpn podoplanin GBrowse link IEP 5 162,142,251 162,175,921 RGD:2292375 RGD
G Pgf placental growth factor GBrowse link ISS 6 109,215,540 109,226,122 RGD:6483601 RGD
G Serpine1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 GBrowse link Severity ISS 12 20,931,996 20,942,374 RGD:4144840 RGD
G Sftpa1 surfactant protein A1 GBrowse link IEP 16 17,570,887 17,574,389 RGD:4143464 RGD
G Sftpb surfactant protein B GBrowse link IEP 4 105,609,410 105,618,452 RGD:4143464 RGD
G Sftpb surfactant protein B GBrowse link ISS 4 105,609,410 105,618,452 RGD:4143403 RGD
G Sftpc surfactant protein C GBrowse link ISS 15 50,923,105 50,926,047 RGD:4144114 RGD
G Sftpc surfactant protein C GBrowse link IEP 15 50,923,105 50,926,047 RGD:4143464 RGD
G Sftpd surfactant protein D IEP RGD:4143464 RGD
G Sftpd surfactant protein D ISS RGD:4143403 RGD
G Stat3 signal transducer and activator of transcription 3 (acute-phase response factor) GBrowse link ISS 10 89,821,078 89,872,970 RGD:6892945 RGD
G Tlr2 toll-like receptor 2 GBrowse link IED 2 175,607,990 175,613,992 RGD:4889533 RGD
G Tlr2 toll-like receptor 2 GBrowse link ISS 2 175,607,990 175,613,992 RGD:4145337 RGD
G Tlr4 toll-like receptor 4 GBrowse link ISS 5 83,564,100 83,577,735 RGD:4144172 RGD
G Tlr4 toll-like receptor 4 GBrowse link ISS 5 83,564,100 83,577,735 RGD:4144197 RGD
G Tlr5 toll-like receptor 5 GBrowse link ISS 13 99,025,501 99,029,755 RGD:5129503 RGD
G Tlr6 toll-like receptor 6 GBrowse link IED 14 46,089,365 46,100,687 RGD:4889533 RGD
G Tlr9 toll-like receptor 9 ISS RGD:5130719 RGD
G Tnf tumor necrosis factor GBrowse link Disease_progression ISS 20 3,661,000 3,663,618 RGD:4143476 RGD
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a GBrowse link ISS 4 162,172,563 162,185,252 RGD:5131429 RGD
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b GBrowse link ISS 5 163,666,541 163,697,484 RGD:5131429 RGD
Pneumonia, Mycoplasma term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Ada adenosine deaminase GBrowse link ISS 3 154,636,530 154,660,637 RGD:5128857 RGD
G Ccl4 chemokine (C-C motif) ligand 4 GBrowse link ISS 10 71,759,643 71,761,115 RGD:4892091 RGD
G Ccl5 chemokine (C-C motif) ligand 5 GBrowse link ISS 10 71,605,791 71,610,330 RGD:4891914 RGD
G Ccr5 chemokine (C-C motif) receptor 5 GBrowse link ISS 8 128,907,157 128,912,272 RGD:4892091 RGD
G Crp C-reactive protein, pentraxin-related GBrowse link ISS 13 88,702,243 88,703,153 RGD:5131292 RGD
G Hdc histidine decarboxylase GBrowse link ISS 3 114,119,316 114,138,107 RGD:5143920 RGD
G Il13 interleukin 13 GBrowse link ISS 10 39,093,512 39,096,069 RGD:4145765 RGD
G Tnf tumor necrosis factor GBrowse link ISS 20 3,661,000 3,663,618 RGD:4145765 RGD
Pneumonia, Pneumococcal term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Alox5 arachidonate 5-lipoxygenase GBrowse link ISS 4 152,610,283 152,657,891 RGD:4890435 RGD
G C3 complement component 3 Disease_progression IEP RGD:5129523 RGD
G C3 complement component 3 ISS RGD:5130163 RGD
G C3 complement component 3 ISS RGD:5129509 RGD
G C5 complement component 5 GBrowse link Severity ISS 3 14,011,115 14,102,744 RGD:5130159 RGD
G Ccl5 chemokine (C-C motif) ligand 5 GBrowse link Susceptibility ISS 10 71,605,791 71,610,330 RGD:4892130 RGD
G Cd14 CD14 molecule GBrowse link ISS 18 29,374,593 29,376,190 RGD:4144788 RGD
G Chi3l1 chitinase 3-like 1 (cartilage glycoprotein-39) GBrowse link ISS 13 47,139,658 47,147,591 RGD:4892626 RGD
G Crhr1 corticotropin releasing hormone receptor 1 GBrowse link ISS 10 93,312,405 93,354,229 RGD:5147472 RGD
G Crhr2 corticotropin releasing hormone receptor 2 GBrowse link ISS 4 83,839,822 83,867,017 RGD:5147472 RGD
G Crp C-reactive protein, pentraxin-related GBrowse link Disease_progression ISS 13 88,702,243 88,703,153 RGD:5131293 RGD
G Cxcl1 chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) GBrowse link ISS 14 18,690,339 18,692,118 RGD:5134957 RGD
G Cxcl9 chemokine (C-X-C motif) ligand 9 GBrowse link ISS 14 17,284,085 17,288,996 RGD:5135285 RGD
G Hmox1 heme oxygenase (decycling) 1 GBrowse link ISS 19 13,963,139 13,969,960 RGD:4145366 RGD
G Hp haptoglobin GBrowse link ISS 19 39,443,016 39,447,566 RGD:5147385 RGD
G Il15 interleukin 15 GBrowse link ISS 19 27,487,268 27,498,973 RGD:5000755 RGD
G Il15ra interleukin 15 receptor, alpha GBrowse link ISS 17 77,998,621 78,029,657 RGD:5000755 RGD
G Il17a interleukin 17A GBrowse link ISS 9 19,454,979 19,458,467 RGD:4888531 RGD
G Il18 interleukin 18 GBrowse link ISS 8 53,936,584 53,943,228 RGD:4889960 RGD
G Il6 interleukin 6 GBrowse link ISS 4 456,799 461,376 RGD:4143255 RGD
G Lep leptin GBrowse link ISS 4 55,943,837 55,945,938 RGD:5128869 RGD
G Lepr leptin receptor GBrowse link ISS 5 122,320,075 122,503,449 RGD:5128846 RGD
G Mbl2 mannose-binding lectin (protein C) 2 GBrowse link No_Association ISS 1 233,978,931 233,983,824 RGD:4889477 RGD
G Mbl2 mannose-binding lectin (protein C) 2 GBrowse link ISS 1 233,978,931 233,983,824 RGD:4889478 RGD
G Nod1 nucleotide-binding oligomerization domain containing 1 GBrowse link ISS 4 83,398,809 83,449,207 RGD:5131480 RGD
G Nod2 nucleotide-binding oligomerization domain containing 2 GBrowse link ISS 19 19,662,337 19,697,341 RGD:5131480 RGD
G Nos2 nitric oxide synthase 2, inducible GBrowse link ISS 10 65,036,884 65,072,453 RGD:4891950 RGD
G Sftpd surfactant protein D Severity ISS RGD:4143519 RGD
G Tlr2 toll-like receptor 2 GBrowse link ISS 2 175,607,990 175,613,992 RGD:4145321 RGD
G Tnf tumor necrosis factor GBrowse link ISS 20 3,661,000 3,663,618 RGD:4143479 RGD
Pneumonia, Staphylococcal term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Cd86 CD86 molecule GBrowse link ISS 11 66,215,233 66,238,882 RGD:4892562 RGD
G Fn1 fibronectin 1 GBrowse link IED 9 70,702,181 70,771,155 RGD:7205474 RGD
G Ifnar1 interferon (alpha, beta and omega) receptor 1 GBrowse link ISS 11 31,454,789 31,478,449 RGD:5490273 RGD
G Il15 interleukin 15 GBrowse link ISS 19 27,487,268 27,498,973 RGD:4996474 RGD
G Il1b interleukin 1 beta GBrowse link ISS 3 116,964,422 116,970,867 RGD:4142828 RGD
G Nod2 nucleotide-binding oligomerization domain containing 2 GBrowse link ISS 19 19,662,337 19,697,341 RGD:5131444 RGD
Term paths to the root
Path 1
Term Annotations click to browse term
  Diseases 30477
    Bacterial Infections and Mycoses 1471
      Bacterial Infections 522
        Pneumonia, Bacterial 120
          Chlamydial Pneumonia 0
          Pneumonia of Calves, Enzootic 0
          Pneumonia of Swine, Mycoplasmal 0
          Pneumonia, Mycoplasma 8
          Pneumonia, Pneumococcal 30
          Pneumonia, Rickettsial 0
          Pneumonia, Staphylococcal 6
Path 2
Term Annotations click to browse term
  Diseases 30477
    Bacterial Infections and Mycoses 1471
      Infection 1184
        Respiratory Tract Infections 786
          Pneumonia 251
            Pneumonia, Bacterial 120
              Chlamydial Pneumonia 0
              Pneumonia of Calves, Enzootic 0
              Pneumonia of Swine, Mycoplasmal 0
              Pneumonia, Mycoplasma 8
              Pneumonia, Pneumococcal 30
              Pneumonia, Rickettsial 0
              Pneumonia, Staphylococcal 6
paths to the root

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