ONTOLOGY REPORT - ANNOTATIONS

Term:Colonic Neoplasms
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Accession:RDO:0005238 term browser browse the term
Definition:Tumors or cancer of the COLON.
Synonyms:exact_synonym: Cancer of Colon;   Cancer of the Colon;   Colon Cancer;   Colon Cancers;   Colon Neoplasm;   Colon Neoplasms;   Colonic Cancer;   Colonic Cancers;   Colonic Neoplasm
 primary_id: MESH:D003110

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Colonic Neoplasms term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Acvr2a activin A receptor, type IIA GBrowse link ISS 3 29,779,827 29,808,881 RGD:2301065 RGD
G Akt2 v-akt murine thymoma viral oncogene homolog 2 GBrowse link Onset IEP 1 82,686,233 82,726,544 RGD:2313394 RGD
G Akt2 v-akt murine thymoma viral oncogene homolog 2 GBrowse link Onset ISS 1 82,686,233 82,726,544 RGD:2313394 RGD
G Anxa7 annexin A7 GBrowse link ISS 15 4,047,956 4,075,981 RGD:2292654 RGD
G Apc adenomatous polyposis coli GBrowse link IPM 18 26,732,147 26,790,383 RGD:1601201 RGD
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 GBrowse link IEP 4 159,033,170 159,048,108 RGD:625559 RGD
G Bard1 BRCA1 associated RING domain 1 GBrowse link IED 9 70,120,151 70,198,591 RGD:632230 RGD
G Bcl2 B-cell CLL/lymphoma 2 GBrowse link IEP 13 12,730,736 12,905,108 RGD:2293078 RGD
G Brca1 breast cancer 1, early onset GBrowse link Susceptibility ISS 10 90,513,630 90,572,676 RGD:1599497 RGD
G Ccl2 chemokine (C-C motif) ligand 2 GBrowse link IEP 10 70,256,263 70,258,061 RGD:5135051 RGD
G Ccl3 chemokine (C-C motif) ligand 3 GBrowse link IEP 10 71,744,559 71,746,109 RGD:5135051 RGD
G Ccnd2 cyclin D2 GBrowse link IEP 4 163,523,817 163,546,501 RGD:2289181 RGD
G Ccne1 cyclin E1 GBrowse link IEP 1 90,568,189 90,577,426 RGD:2289293 RGD
G Cd40lg CD40 ligand GBrowse link ISS X 141,925,019 141,937,183 RGD:5490978 RGD
G Cd59 CD59 molecule, complement regulatory protein GBrowse link IPM 3 89,243,600 89,245,129 RGD:1600485 RGD
G Cdkn2a cyclin-dependent kinase inhibitor 2A GBrowse link IEP 5 108,908,749 108,916,380 RGD:1600823 RGD
G Col18a1 collagen, type XVIII, alpha 1 GBrowse link Severity IED 20 11,920,816 11,982,468 RGD:1600901 RGD
G Ctnnb1 catenin (cadherin associated protein), beta 1 GBrowse link IAGP 8 125,978,161 125,987,670 RGD:1599637 RGD
G Fas Fas (TNF receptor superfamily, member 6) GBrowse link Resistance IEP 1 238,259,443 238,274,745 RGD:1600355 RGD
G Hpgd hydroxyprostaglandin dehydrogenase 15 (NAD) GBrowse link ISS 16 37,419,901 37,457,896 RGD:5688759 RGD
G Hs3st2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 GBrowse link ISS 1 180,202,791 180,324,718 RGD:2317633 RGD
G Kdr kinase insert domain receptor ISS RGD:5684533 RGD
G Klf5 Kruppel-like factor 5 GBrowse link Model ISS 15 83,103,177 83,118,363 RGD:1304288 RGD
G Mgmt O-6-methylguanine-DNA methyltransferase GBrowse link IEP 1 196,629,366 196,866,937 RGD:1599637 RGD
G Mki67 antigen identified by monoclonal antibody Ki-67 GBrowse link ISS 1 195,310,027 195,336,224 RGD:6483523 RGD
G Mmp9 matrix metallopeptidase 9 GBrowse link Disease_progression IEP 3 155,985,473 155,993,433 RGD:2325778 RGD
G Mmp9 matrix metallopeptidase 9 GBrowse link IED 3 155,985,473 155,993,433 RGD:5135051 RGD
G Mre11a MRE11 meiotic recombination 11 homolog A (S. cerevisiae) GBrowse link ISS 8 11,588,409 11,632,483 RGD:2317740 RGD
G Mtus1 microtubule associated tumor suppressor 1 GBrowse link ISS 16 54,611,502 54,664,075 RGD:2317016 RGD
G Myc myelocytomatosis oncogene GBrowse link Treatment IED 7 98,953,142 98,958,060 RGD:7240527 RGD
G Nod2 nucleotide-binding oligomerization domain containing 2 GBrowse link ISS 19 19,662,337 19,697,341 RGD:5131515 RGD
G Nqo1 NAD(P)H dehydrogenase, quinone 1 GBrowse link IED 19 37,251,147 37,266,040 RGD:5133247 RGD
G Pdgfrb platelet derived growth factor receptor, beta polypeptide GBrowse link ISS 18 57,014,475 57,053,581 RGD:2292176 RGD
G Pecam1 platelet/endothelial cell adhesion molecule 1 GBrowse link ISS 10 96,056,220 96,057,232 RGD:6771355 RGD
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha GBrowse link ISS 2 118,640,277 118,672,440 RGD:5685670 RGD
G Pik3r1 phosphoinositide-3-kinase, regulatory subunit 1 (alpha) GBrowse link ISS 2 32,602,673 32,675,350 RGD:2290476 RGD
G Plau plasminogen activator, urokinase GBrowse link Treatment ISS 15 3,680,072 3,686,232 RGD:7241805 RGD
G Plau plasminogen activator, urokinase GBrowse link ISS 15 3,680,072 3,686,232 RGD:7241262 RGD
G Pms2 postmeiotic segregation increased 2 (S. cerevisiae) GBrowse link ISS 12 11,004,507 11,028,754 RGD:1599141 RGD
G Pparg peroxisome proliferator-activated receptor gamma GBrowse link ISS 4 151,492,220 151,617,331 RGD:1601444 RGD
G Prf1 perforin 1 (pore forming protein) GBrowse link IED 20 28,658,367 28,663,877 RGD:6482822 RGD
G Prf1 perforin 1 (pore forming protein) GBrowse link ISS 20 28,658,367 28,663,877 RGD:6482812 RGD
G Prkaa1 protein kinase, AMP-activated, alpha 1 catalytic subunit GBrowse link ISS 2 54,327,821 54,360,462 RGD:5685669 RGD
G Ptgs2 prostaglandin-endoperoxide synthase 2 GBrowse link IPM 13 64,427,288 64,432,978 RGD:5135051 RGD
G Runx3 runt-related transcription factor 3 GBrowse link ISS 5 153,950,116 153,973,141 RGD:2302551 RGD
G Src v-src sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog (avian) GBrowse link Disease_progression ISS 3 148,157,256 148,170,524 RGD:1601371 RGD
G Tgfbr2 transforming growth factor, beta receptor II GBrowse link ISS 8 120,593,595 120,680,453 RGD:2301065 RGD
G Tnfrsf17 tumor necrosis factor receptor superfamily, member 17 GBrowse link ISS 10 4,187,672 4,193,420 RGD:2317311 RGD
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a GBrowse link IEP 4 162,172,563 162,185,252 RGD:5131434 RGD
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b GBrowse link ISS 5 163,666,541 163,697,484 RGD:5131434 RGD
G Vegfa vascular endothelial growth factor A GBrowse link ISS 9 10,520,730 10,536,071 RGD:5684533 RGD
G Vegfa vascular endothelial growth factor A GBrowse link IEP 9 10,520,730 10,536,071 RGD:5135051 RGD
G Vegfc vascular endothelial growth factor C GBrowse link IEP 16 40,624,435 40,739,692 RGD:2315488 RGD
S BDII TAS RGD:1004 RGD
S F344-ApcPircUwm IED RGD:1601201 RGD
S WF Wistar Furth TAS RGD:1004 RGD
Adenomatous Polyposis Coli term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Apc adenomatous polyposis coli GBrowse link ISS 18 26,732,147 26,790,383 RGD:2293188 RGD
G Apc adenomatous polyposis coli GBrowse link IEA 18 26,732,147 26,790,383 RGD:1331525 RGD
G Apc adenomatous polyposis coli GBrowse link ISS 18 26,732,147 26,790,383 RGD:7240710 OMIM
G ApcPirc adenomatous polyposis coli IED RGD:1601201 RGD
G Bmpr1a bone morphogenetic protein receptor, type IA GBrowse link ISS 16 10,061,943 10,105,854 RGD:734650 RGD
G Mutyh mutY homolog (E. coli) GBrowse link ISS 5 137,103,958 137,115,897 RGD:1600191 RGD
G Smad4 SMAD family member 4 GBrowse link ISS 18 70,432,705 70,461,541 RGD:1599899 RGD
G Smad4 SMAD family member 4 GBrowse link ISS 18 70,432,705 70,461,541 RGD:1599898 RGD
S F344-ApcPircUwm IED RGD:1601201 RGD
Colorectal Adenomatous Polyposis, Autosomal Recessive term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Mutyh mutY homolog (E. coli) GBrowse link ISS 5 137,103,958 137,115,897 RGD:7240710 OMIM
Desmoid disease, hereditary term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Apc adenomatous polyposis coli GBrowse link ISS 18 26,732,147 26,790,383 RGD:7240710 OMIM
Polyposis Syndrome, Hereditary Mixed, 2 term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Bmpr1a bone morphogenetic protein receptor, type IA GBrowse link ISS 16 10,061,943 10,105,854 RGD:7240710 OMIM
Term paths to the root
Path 1
Term Annotations click to browse term
  Diseases 30466
    Digestive System Diseases 2254
      Gastrointestinal Diseases 802
        Intestinal Diseases 662
          Intestinal Neoplasms 215
            Colorectal Neoplasms 207
              Colonic Neoplasms 68
                Adenomatous Polyposis Coli + 12
                Sigmoid Neoplasms 0
Path 2
Term Annotations click to browse term
  Diseases 30466
    Neoplasms 5206
      Neoplasms by Site 3793
        Digestive System Neoplasms 944
          Gastrointestinal Neoplasms 312
            Intestinal Neoplasms 215
              Colorectal Neoplasms 207
                Colonic Neoplasms 68
                  Adenomatous Polyposis Coli + 12
                  Sigmoid Neoplasms 0
paths to the root

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