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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:RNA degradation pathway
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Accession:PW:0001161 term browser browse the term
Definition:The turnover of RNA molecules produced by the three eukaryotic polymerases and those resulting from their processing and/or assembly. It includes the degradation of defective molecules, of excess molecules, or of defective components by the RNA surveillance or decay pathway.
Synonyms:related_synonym: RNA catabolic process



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RNA degradation pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btg1 BTG anti-proliferation factor 1 IEA KEGG rno:03018 NCBI chr 7:31,341,391...31,343,649
Ensembl chr 7:31,341,027...31,343,649
JBrowse link
G Btg1c BTG anti-proliferation factor 1C IEA KEGG rno:03018 NCBI chr  X:116,749,728...116,754,643
Ensembl chr  X:116,749,715...116,754,717
JBrowse link
G Btg2 BTG anti-proliferation factor 2 IEA KEGG rno:03018 NCBI chr13:45,531,881...45,535,642
Ensembl chr13:45,531,925...45,535,628
JBrowse link
G Btg3 BTG anti-proliferation factor 3 IEA KEGG rno:03018 NCBI chr11:17,030,156...17,046,069
Ensembl chr11:17,030,160...17,046,170
JBrowse link
G Btg4 BTG anti-proliferation factor 4 IEA KEGG rno:03018 NCBI chr 8:51,410,774...51,425,802
Ensembl chr 8:51,422,061...51,425,796
JBrowse link
G C1d C1D nuclear receptor corepressor IEA KEGG rno:03018 NCBI chr14:91,660,951...91,673,177
Ensembl chr14:91,660,989...91,672,852
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 IEA KEGG rno:03018 NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 IEA KEGG rno:03018 NCBI chr 8:114,280,486...114,330,110
Ensembl chr 8:114,280,490...114,330,107
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 IEA KEGG rno:03018 NCBI chr 7:52,130,445...52,222,338
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 IEA KEGG rno:03018 NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Cnot4 CCR4-NOT transcription complex, subunit 4 IEA KEGG rno:03018 NCBI chr 4:63,712,770...63,814,355
Ensembl chr 4:63,712,770...63,814,360
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 IEA KEGG rno:03018 NCBI chr10:33,978,785...34,031,025
Ensembl chr10:33,980,831...34,031,025
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like IEA KEGG rno:03018 NCBI chr14:13,410,499...13,502,511
Ensembl chr14:13,411,281...13,498,203
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 IEA KEGG rno:03018 NCBI chr16:51,775,416...51,794,581
Ensembl chr16:51,775,412...51,794,576
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 IEA KEGG rno:03018 NCBI chr10:42,281,614...42,294,740
Ensembl chr10:42,281,722...42,294,730
JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 IEA KEGG rno:03018 NCBI chr 9:76,084,269...76,109,111
Ensembl chr 9:76,084,334...76,109,100
JBrowse link
G Dcp1a decapping mRNA 1A IEA KEGG rno:03018 NCBI chr16:5,656,960...5,702,151
Ensembl chr16:5,656,773...5,702,140
JBrowse link
G Dcp1b decapping mRNA 1B IEA KEGG rno:03018 NCBI chr 4:152,358,267...152,395,747
Ensembl chr 4:152,358,241...152,397,145
JBrowse link
G Dcp2 decapping mRNA 2 IEA KEGG rno:03018 NCBI chr18:36,750,732...36,787,067
Ensembl chr18:36,750,732...36,788,557
JBrowse link
G Dcps decapping enzyme, scavenger IEA KEGG rno:03018 NCBI chr 8:33,468,669...33,524,407
Ensembl chr 8:33,415,671...33,524,389
JBrowse link
G Dhx36 DEAH-box helicase 36 IEA KEGG rno:03018 NCBI chr 2:146,856,469...146,894,577
Ensembl chr 2:146,856,469...146,894,572
JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease IEA KEGG rno:03018 NCBI chr15:75,820,040...75,850,450
Ensembl chr15:75,823,436...75,850,642
JBrowse link
G Edc4 enhancer of mRNA decapping 4 IEA KEGG rno:03018 NCBI chr19:33,774,062...33,786,054
Ensembl chr19:33,774,055...33,787,758
JBrowse link
G Eno1 enolase 1 IEA KEGG rno:03018 NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336
JBrowse link
G Eno2 enolase 2 IEA KEGG rno:03018 NCBI chr 4:157,572,085...157,580,971
Ensembl chr 4:157,572,088...157,580,980
JBrowse link
G Eno3 enolase 3 IEA KEGG rno:03018 NCBI chr10:55,370,531...55,375,921
Ensembl chr10:55,366,975...55,375,921
JBrowse link
G Exosc2 exosome component 2 IEA KEGG rno:03018 NCBI chr 3:14,962,930...14,973,645
Ensembl chr 3:14,962,917...14,973,575
JBrowse link
G Exosc3 exosome component 3 IEA KEGG rno:03018 NCBI chr 5:59,573,849...59,579,065
Ensembl chr 5:59,573,886...59,579,060
JBrowse link
G Exosc4 exosome component 4 IEA KEGG rno:03018 NCBI chr 7:108,047,831...108,050,573
Ensembl chr 7:108,047,831...108,050,573
JBrowse link
G Exosc5 exosome component 5 IEA KEGG rno:03018 NCBI chr 1:81,168,128...81,177,266
Ensembl chr 1:81,166,023...81,177,265
JBrowse link
G Exosc6 exosome component 6 IEA KEGG rno:03018 NCBI chr19:39,022,171...39,023,585
Ensembl chr19:39,022,183...39,023,515
JBrowse link
G Exosc7 exosome component 7 IEA KEGG rno:03018 NCBI chr 8:122,773,607...122,798,943
Ensembl chr 8:122,773,591...122,799,270
JBrowse link
G Exosc8 exosome component 8 IEA KEGG rno:03018 NCBI chr 2:138,930,405...138,937,009
Ensembl chr 2:138,930,405...138,936,928
JBrowse link
G Exosc9 exosome component 9 IEA KEGG rno:03018 NCBI chr 2:119,416,028...119,426,981
Ensembl chr 2:119,388,715...119,427,051
JBrowse link
G Hspa9 heat shock protein family A (Hsp70) member 9 IEA KEGG rno:03018 NCBI chr18:26,536,131...26,554,294
Ensembl chr18:26,535,798...26,554,292
JBrowse link
G Hspd1 heat shock protein family D (Hsp60) member 1 IEA KEGG rno:03018 NCBI chr 9:56,579,195...56,590,011
Ensembl chr 9:56,579,201...56,589,662
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated IEA KEGG rno:03018 NCBI chr16:66,277,345...66,288,852
Ensembl chr16:66,277,345...66,288,852
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated IEA KEGG rno:03018 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119
JBrowse link
G Mphosph6-ps1 M phase phosphoprotein 6, pseudogene IEA KEGG rno:03018 NCBI chr 6:99,321,071...99,322,114 JBrowse link
G Mtrex Mtr4 exosome RNA helicase IEA KEGG rno:03018 NCBI chr 2:44,500,326...44,560,624
Ensembl chr 2:44,461,444...44,560,627
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 IEA KEGG rno:03018 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like IEA KEGG rno:03018 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A IEA KEGG rno:03018 NCBI chr  X:68,023,845...68,026,508 JBrowse link
G Pabpc2 poly(A) binding protein, cytoplasmic 2 IEA KEGG rno:03018 NCBI chr18:31,654,218...31,656,486
Ensembl chr18:31,654,218...31,656,286
JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 IEA KEGG rno:03018 NCBI chr 5:135,563,142...135,578,985
Ensembl chr 5:135,563,562...135,578,979
JBrowse link
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like IEA KEGG rno:03018 NCBI chr 2:129,807,755...129,809,745
Ensembl chr 2:129,807,755...129,809,745
JBrowse link
G Pabpc5 poly A binding protein, cytoplasmic 5 IEA KEGG rno:03018 NCBI chr  X:85,637,763...85,641,235
Ensembl chr  X:85,638,574...85,639,722
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 IEA KEGG rno:03018 NCBI chr 7:729,146...747,744
Ensembl chr 7:729,562...747,744
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 IEA KEGG rno:03018 NCBI chr12:7,476,707...7,595,384
Ensembl chr12:7,476,697...7,599,204
JBrowse link
G Parn poly(A)-specific ribonuclease IEA KEGG rno:03018 NCBI chr10:1,410,636...1,548,573
Ensembl chr10:1,410,642...1,548,560
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor IEA KEGG rno:03018 NCBI chr 1:208,831,115...208,862,904
Ensembl chr 1:208,831,115...208,862,857
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 IEA KEGG rno:03018 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Skic2 SKI2 subunit of superkiller complex IEA KEGG rno:03018 NCBI chr20:3,982,494...3,993,261
Ensembl chr20:3,982,593...3,993,261
JBrowse link
G Skic3 SKI3 subunit of superkiller complex IEA KEGG rno:03018 NCBI chr 2:5,631,544...5,783,643
Ensembl chr 2:5,631,635...5,751,626
JBrowse link
G Skic8 SKI8 subunit of superkiller complex IEA KEGG rno:03018 NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813
JBrowse link
G Tob1 transducer of ErbB-2.1 IEA KEGG rno:03018 NCBI chr10:79,163,093...79,165,131
Ensembl chr10:79,160,154...79,165,215
JBrowse link
G Tob2 transducer of ERBB2, 2 IEA KEGG rno:03018 NCBI chr 7:113,362,703...113,371,423
Ensembl chr 7:113,361,148...113,372,688
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 IEA KEGG rno:03018 NCBI chr 8:96,527,871...96,637,385
Ensembl chr 8:96,528,195...96,632,739
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEA KEGG rno:03018 NCBI chr 3:134,436,916...134,509,308
Ensembl chr 3:134,437,109...134,509,306
JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 IEA KEGG rno:03018 NCBI chr 5:58,992,558...59,173,308
Ensembl chr 5:58,993,290...59,173,300
JBrowse link
mRNA decay pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG rno:03015 NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001
JBrowse link
G Alyref Aly/REF export factor IEA KEGG rno:03015 NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069
JBrowse link
G Casc3 CASC3 exon junction complex subunit IEA KEGG rno:03015 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 IEA KEGG rno:03015 NCBI chr 3:69,806,774...69,818,633
Ensembl chr 3:69,806,778...69,810,421
JBrowse link
G Cpsf1 cleavage and polyadenylation specific factor 1 IEA KEGG rno:03015 NCBI chr 7:108,319,429...108,330,018
Ensembl chr 7:108,319,434...108,329,934
JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 IEA KEGG rno:03015 NCBI chr 6:121,123,941...121,152,756
Ensembl chr 6:121,120,569...121,151,921
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 IEA KEGG rno:03015 NCBI chr 6:40,836,121...40,864,129
Ensembl chr 6:40,836,097...40,864,128
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 IEA KEGG rno:03015 NCBI chr12:9,429,765...9,445,586
Ensembl chr12:9,429,523...9,445,586
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 IEA KEGG rno:03015 NCBI chr 7:52,956,589...53,001,783
Ensembl chr 7:52,956,589...52,988,122
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 IEA KEGG rno:03015 NCBI chr 1:207,167,690...207,191,938
Ensembl chr 1:207,167,859...207,191,905
JBrowse link
G Cstf1 cleavage stimulation factor subunit 1 IEA KEGG rno:03015 NCBI chr 3:161,144,522...161,156,294
Ensembl chr 3:161,144,548...161,156,300
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 IEA KEGG rno:03015 NCBI chr  X:97,253,559...97,279,476
Ensembl chr  X:97,253,586...97,279,476
JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant IEA KEGG rno:03015 NCBI chr 1:228,952,617...228,956,183
Ensembl chr 1:228,952,504...228,955,873
JBrowse link
G Cstf3 cleavage stimulation factor subunit 3 IEA KEGG rno:03015 NCBI chr 3:90,966,415...91,037,669
Ensembl chr 3:90,966,354...91,042,196
JBrowse link
G Dazap1 DAZ associated protein 1 IEA KEGG rno:03015 NCBI chr 7:9,423,673...9,448,116
Ensembl chr 7:9,424,178...9,538,818
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA KEGG rno:03015 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057
JBrowse link
G Etf1 eukaryotic translation termination factor 1 IEA KEGG rno:03015 NCBI chr18:26,502,413...26,530,753
Ensembl chr18:26,504,080...26,530,810
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 IEA KEGG rno:03015 NCBI chr14:33,615,210...33,675,742
Ensembl chr14:33,617,720...33,675,708
JBrowse link
G Gspt1 G1 to S phase transition 1 IEA KEGG rno:03015 NCBI chr10:4,362,528...4,397,215
Ensembl chr10:4,362,510...4,397,198
JBrowse link
G Gspt2 G1 to S phase transition 2 IEA KEGG rno:03015 NCBI chr  X:59,587,237...59,589,758
Ensembl chr  X:59,587,276...59,594,162
JBrowse link
G Hbs1l HBS1-like translational GTPase IEA KEGG rno:03015 NCBI chr 1:16,092,529...16,170,082
Ensembl chr 1:16,092,547...16,170,074
JBrowse link
G Magoh mago homolog, exon junction complex subunit IEA KEGG rno:03015 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617
JBrowse link
G Magohb mago homolog B, exon junction complex subunit IEA KEGG rno:03015 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967
JBrowse link
G Msi1 musashi RNA-binding protein 1 IEA KEGG rno:03015 NCBI chr12:41,158,301...41,251,134
Ensembl chr12:41,158,599...41,191,076
JBrowse link
G Msi2 musashi RNA-binding protein 2 IEA KEGG rno:03015 NCBI chr10:73,143,760...73,510,566
Ensembl chr10:73,147,380...73,510,157
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 IEA KEGG rno:03015 NCBI chr 5:60,416,023...60,449,004
Ensembl chr 5:60,415,982...60,449,089
JBrowse link
G Nudt21 nudix hydrolase 21 IEA KEGG rno:03015 NCBI chr19:10,974,800...10,993,841
Ensembl chr19:10,974,241...10,991,682
JBrowse link
G Nxf1 nuclear RNA export factor 1 IEA KEGG rno:03015 NCBI chr 1:205,655,442...205,668,637
Ensembl chr 1:205,655,375...205,668,636
JBrowse link
G Nxf3 nuclear RNA export factor 3 IEA KEGG rno:03015 NCBI chr  X:99,025,901...99,050,409
Ensembl chr  X:99,025,901...99,039,261
JBrowse link
G Nxf7 nuclear RNA export factor 7 IEA KEGG rno:03015 NCBI chr  X:98,535,374...98,552,562
Ensembl chr  X:98,535,375...98,552,526
JBrowse link
G Nxt1 nuclear transport factor 2-like export factor 1 IEA KEGG rno:03015 NCBI chr 3:136,108,975...136,111,897
Ensembl chr 3:136,108,862...136,111,907
JBrowse link
G Nxt2 nuclear transport factor 2-like export factor 2 IEA KEGG rno:03015 NCBI chr  X:105,855,616...105,862,902
Ensembl chr  X:105,855,608...105,862,899
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 IEA KEGG rno:03015 NCBI chr 7:67,777,438...67,789,731
Ensembl chr 7:67,777,381...67,789,744
JBrowse link
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like IEA KEGG rno:03015 NCBI chr 3:152,692,825...152,725,997
Ensembl chr 3:152,693,700...152,725,997
JBrowse link
G Pabpc1l2a poly(A) binding protein, cytoplasmic 1-like 2A IEA KEGG rno:03015 NCBI chr  X:68,023,845...68,026,508 JBrowse link
G Pabpc2 poly(A) binding protein, cytoplasmic 2 IEA KEGG rno:03015 NCBI chr18:31,654,218...31,656,486
Ensembl chr18:31,654,218...31,656,286
JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 IEA KEGG rno:03015 NCBI chr 5:135,563,142...135,578,985
Ensembl chr 5:135,563,562...135,578,979
JBrowse link
G Pabpc4l poly(A) binding protein, cytoplasmic 4-like IEA KEGG rno:03015 NCBI chr 2:129,807,755...129,809,745
Ensembl chr 2:129,807,755...129,809,745
JBrowse link
G Pabpc5 poly A binding protein, cytoplasmic 5 IEA KEGG rno:03015 NCBI chr  X:85,637,763...85,641,235
Ensembl chr  X:85,638,574...85,639,722
JBrowse link
G Pabpn1 poly(A) binding protein, nuclear 1 IEA KEGG rno:03015 NCBI chr15:28,368,100...28,372,712
Ensembl chr15:28,368,100...28,372,703
JBrowse link
G Pabpn1l PABPN1 like IEA KEGG rno:03015 NCBI chr19:50,669,965...50,673,409
Ensembl chr19:50,669,967...50,673,366
JBrowse link
G Papola poly (A) polymerase alpha IEA KEGG rno:03015 NCBI chr 6:124,682,015...124,734,706
Ensembl chr 6:124,682,105...124,734,468
JBrowse link
G Papolb poly(A) polymerase beta IEA KEGG rno:03015 NCBI chr12:12,044,275...12,046,621
Ensembl chr12:12,044,480...12,046,656
JBrowse link
G Papolg poly(A) polymerase gamma IEA KEGG rno:03015 NCBI chr14:97,827,712...97,861,024
Ensembl chr14:97,827,712...97,861,024
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit IEA KEGG rno:03015 NCBI chr 1:146,694,045...146,724,030
Ensembl chr 1:146,697,646...146,724,124
JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor IEA KEGG rno:03015 NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746
JBrowse link
G Pigz phosphatidylinositol glycan anchor biosynthesis, class Z IEA KEGG rno:03015 NCBI chr11:68,831,847...68,851,798 JBrowse link
G Pnn pinin, desmosome associated protein IEA KEGG rno:03015 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889
JBrowse link
G Ppp2ca protein phosphatase 2 catalytic subunit alpha IEA KEGG rno:03015 NCBI chr10:36,358,110...36,377,864
Ensembl chr10:36,358,101...36,377,862
JBrowse link
G Ppp2cb protein phosphatase 2 catalytic subunit beta IEA KEGG rno:03015 NCBI chr16:58,558,119...58,579,325
Ensembl chr16:58,558,122...58,579,576
JBrowse link
G Ppp2r1a protein phosphatase 2 scaffold subunit A alpha IEA KEGG rno:03015 NCBI chr 1:60,540,223...60,559,467
Ensembl chr 1:60,540,194...60,560,129
JBrowse link
G Ppp2r1b protein phosphatase 2 scaffold subunit A beta IEA KEGG rno:03015 NCBI chr 8:51,195,860...51,228,442
Ensembl chr 8:51,186,717...51,228,485
JBrowse link
G Ppp2r2a protein phosphatase 2, regulatory subunit B, alpha IEA KEGG rno:03015 NCBI chr15:41,204,659...41,263,924
Ensembl chr15:41,204,200...41,263,924
JBrowse link
G Ppp2r2b protein phosphatase 2, regulatory subunit B, beta IEA KEGG rno:03015 NCBI chr18:34,653,716...35,080,889
Ensembl chr18:34,653,721...35,081,025
JBrowse link
G Ppp2r2c protein phosphatase 2, regulatory subunit B, gamma IEA KEGG rno:03015 NCBI chr14:73,846,547...73,931,489
Ensembl chr14:73,846,547...73,931,864
JBrowse link
G Ppp2r2d protein phosphatase 2, regulatory subunit B, delta IEA KEGG rno:03015 NCBI chr 1:193,665,918...193,700,277
Ensembl chr 1:193,665,855...193,700,274
JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha IEA KEGG rno:03015 NCBI chr 8:101,703,512...101,841,530
Ensembl chr 8:101,704,778...101,841,502
JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma IEA KEGG rno:03015 NCBI chr 6:72,647,025...72,670,885
Ensembl chr 6:72,647,025...72,672,491
JBrowse link
G Ppp2r5a protein phosphatase 2, regulatory subunit B', alpha IEA KEGG rno:03015 NCBI chr13:102,931,264...102,975,661
Ensembl chr13:102,931,264...102,975,661
JBrowse link
G Ppp2r5b protein phosphatase 2, regulatory subunit B', beta IEA KEGG rno:03015 NCBI chr 1:203,527,268...203,535,442
Ensembl chr 1:203,527,270...203,535,416
JBrowse link
G Ppp2r5c protein phosphatase 2, regulatory subunit B', gamma IEA KEGG rno:03015 NCBI chr 6:129,461,689...129,598,344
Ensembl chr 6:129,461,648...129,598,346
JBrowse link
G Ppp2r5d protein phosphatase 2, regulatory subunit B', delta IEA KEGG rno:03015 NCBI chr 9:14,270,364...14,300,396
Ensembl chr 9:14,268,745...14,300,400
JBrowse link
G Ppp2r5e protein phosphatase 2 regulatory subunit B', epsilon IEA KEGG rno:03015 NCBI chr 6:94,168,846...94,317,872
Ensembl chr 6:94,168,846...94,317,872
JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor IEA KEGG rno:03015 NCBI chr 7:1,177,746...1,200,899
Ensembl chr 7:1,178,008...1,198,937
JBrowse link
G Rbm8a RNA binding motif protein 8A IEA KEGG rno:03015 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959
JBrowse link
G Rngtt RNA guanylyltransferase and 5'-phosphatase IEA KEGG rno:03015 NCBI chr 5:47,706,929...47,913,297
Ensembl chr 5:47,706,799...47,913,295
JBrowse link
G Rnmt RNA (guanine-7-) methyltransferase IEA KEGG rno:03015 NCBI chr18:61,886,230...61,909,775
Ensembl chr18:61,886,292...61,909,775
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 IEA KEGG rno:03015 NCBI chr10:13,445,516...13,455,858
Ensembl chr10:13,445,653...13,455,858
JBrowse link
G Sap18 Sin3A associated protein 18 IEA KEGG rno:03015 NCBI chr15:31,943,228...31,947,534
Ensembl chr15:31,943,230...31,950,038
Ensembl chr10:31,943,230...31,950,038
JBrowse link
G Sap18-ps1 Sin3A associated protein 18, pseudogene 1 IEA KEGG rno:03015 NCBI chr10:86,657,350...86,657,976
Ensembl chr10:86,657,353...86,657,975
JBrowse link
G Smg5 SMG5 nonsense mediated mRNA decay factor IEA KEGG rno:03015 NCBI chr 2:173,804,987...173,832,102
Ensembl chr 2:173,805,019...173,832,102
JBrowse link
G Smg5l1 Smg5 nonsense mediated mRNA decay factor like 1 IEA KEGG rno:03015 NCBI chr 7:75,917,527...76,051,832
Ensembl chr 7:75,917,392...76,052,413
JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor IEA KEGG rno:03015 NCBI chr10:59,786,258...60,014,395
Ensembl chr10:59,786,258...60,014,395
JBrowse link
G Smg7 SMG7 nonsense mediated mRNA decay factor IEA KEGG rno:03015 NCBI chr13:64,986,145...65,050,698
Ensembl chr13:64,987,434...65,050,582
JBrowse link
G Srrm1 serine and arginine repetitive matrix 1 IEA KEGG rno:03015 NCBI chr 5:147,559,515...147,591,895
Ensembl chr 5:147,559,514...147,591,849
JBrowse link
G Sympk symplekin scaffold protein IEA KEGG rno:03015 NCBI chr 1:78,672,372...78,700,684
Ensembl chr 1:78,672,378...78,700,684
JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay IEA KEGG rno:03015 NCBI chr17:72,224,575...72,335,896
Ensembl chr17:72,225,316...72,335,855
JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay IEA KEGG rno:03015 NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345
JBrowse link
G Upf3b UPF3B, regulator of nonsense mediated mRNA decay IEA KEGG rno:03015 NCBI chr  X:116,335,308...116,353,332
Ensembl chr  X:116,335,308...116,353,236
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3871
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1752
        RNA processing pathway 294
          RNA degradation pathway 137
            mRNA decay pathway + 79
            rRNA decay pathway + 0
            tRNA decay pathway 0
paths to the root