PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: retinoid cycle metabolic pathway
Accession: PW:0001005
browse the term
Definition: The series of reactions involved in the regeneration of the visual chromophore 11-cis retinal from the all-trans retinal released from the light -activated rhodopsin.
Synonyms: exact_synonym: visual cycle metabolic pathway
View Interactive Diagram
G
Abca4
ATP binding cassette subfamily A member 4
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
G
Lrat
lecithin retinol acyltransferase
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
G
Opn1mw
opsin 1, medium wave sensitive
ISO
RGD
PMID:21704730
RGD:6893536
NCBI chr X:151,905,056...151,925,419
Ensembl chr X:151,905,096...151,925,388
G
Opn1sw
opsin 1, short wave sensitive
ISO
RGD
PMID:21704730
RGD:6893536
NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
G
Rbp1
retinol binding protein 1
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 8:99,025,218...99,046,740
Ensembl chr 8:99,025,206...99,046,743
G
Rbp3
retinol binding protein 3
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
G
Rdh10
retinol dehydrogenase 10
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
G
Rdh11
retinol dehydrogenase 11
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
G
Rdh12
retinol dehydrogenase 12
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
G
Rdh5
retinol dehydrogenase 5
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 7:1,341,172...1,346,863
Ensembl chr 7:1,340,934...1,351,558
G
Rdh8
retinol dehydrogenase 8
ISO
RGD
PMID:21447403
RGD:6893650
NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
G
Rho
rhodopsin
ISO
RGD
PMID:21704730
RGD:6893536
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Rlbp1
retinaldehyde binding protein 1
ISO
RGD
PMID:20188572
RGD:6903223
NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
G
Rpe65
retinoid isomerohydrolase RPE65
ISO IMP
RGD
PMID:21447403 PMID:21785167
RGD:6893650 , RGD:6893661
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
G
Abca4
ATP binding cassette subfamily A member 4
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
G
Lrat
lecithin retinol acyltransferase
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
G
Rbp3
retinol binding protein 3
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
G
Rdh12
retinol dehydrogenase 12
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
G
Rlbp1
retinaldehyde binding protein 1
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr 1:133,308,920...133,322,296
Ensembl chr 1:133,308,938...133,322,296
G
Rpe65
retinoid isomerohydrolase RPE65
ISO
RGD
PMID:20212494
RGD:8547536
NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all