PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: fatty acid beta degradation pathway
Accession: PW:0000738
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Definition: Fatty acid degradation via beta oxidation, the most common fatty acid degradation pathway, occurs in four reactions resulting in the formation of acetyl-CoA and a fatty acyl-CoA two carbon shorter than the one that began the cycle. Acetyl-CoA can undergo further oxidation via the Krebs cycle or can be converted to ketone bodies.
Synonyms: related_synonym: SMP:00052; SMP:00480; SMP:00481; SMP:00482; fatty acid beta oxidation pathway
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Abcd1
ATP binding cassette subfamily D member 1
ISO
SMPDB
SMP:00052
NCBI chr X:151,428,334...151,450,115
Ensembl chr X:151,428,578...151,450,115
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Abcd2
ATP binding cassette subfamily D member 2
ISO
SMPDB
SMP:00052
NCBI chr 7:122,263,034...122,311,642
Ensembl chr 7:122,263,032...122,311,642
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Acaa2
acetyl-CoA acyltransferase 2
IDA ISO
SMPDB RGD
PMID:11879205
SMP:00480 SMP:00481 SMP:00482, RGD:2317624
NCBI chr18:68,345,136...68,373,246
Ensembl chr18:68,345,012...68,373,249
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Acad9
acyl-CoA dehydrogenase family, member 9
ISO
RGD
PMID:14728676
RGD:2317589
NCBI chr 2:118,943,170...118,966,150
Ensembl chr 2:118,943,174...118,966,547
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Acadl
acyl-CoA dehydrogenase, long chain
ISO IDA
SMPDB RGD
PMID:14728676 PMID:3968063
SMP:00480 SMP:00482, RGD:2317589 , RGD:2317678
NCBI chr 9:68,333,981...68,372,149
Ensembl chr 9:68,333,980...68,372,220
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Acadm
acyl-CoA dehydrogenase medium chain
ISO IDA
SMPDB RGD
PMID:14728676 PMID:3968063
SMP:00481, RGD:2317589 , RGD:2317678
NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147
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Acads
acyl-CoA dehydrogenase short chain
ISO IDA
SMPDB RGD
PMID:14728676 PMID:3968063
SMP:00480, RGD:2317589 , RGD:2317678
NCBI chr12:41,493,650...41,502,897
Ensembl chr12:41,493,626...41,502,898
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Acadvl
acyl-CoA dehydrogenase, very long chain
ISO IMP
RGD
PMID:14728676 PMID:15850553
RGD:2317589 , RGD:2317683
NCBI chr10:54,732,875...54,738,102
Ensembl chr10:54,732,469...54,738,075
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Acat1
acetyl-CoA acetyltransferase 1
ISO
SMPDB
SMP:00480
NCBI chr 8:53,979,813...54,008,861
Ensembl chr 8:53,979,813...54,008,855
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Acsl1
acyl-CoA synthetase long-chain family member 1
ISO
SMPDB RGD
PMID:17762044
SMP:00052 SMP:00482, RGD:2317576
NCBI chr16:45,755,246...45,821,541
Ensembl chr16:45,755,254...45,821,541
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Acsl3
acyl-CoA synthetase long-chain family member 3
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 9:80,115,164...80,164,636
Ensembl chr 9:80,115,112...80,164,627
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Acsl4
acyl-CoA synthetase long-chain family member 4
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr X:105,942,794...106,006,573
Ensembl chr X:105,942,799...106,006,427
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Acsl5
acyl-CoA synthetase long-chain family member 5
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 1:254,289,513...254,336,608
Ensembl chr 1:254,292,521...254,336,607
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Acsl6
acyl-CoA synthetase long-chain family member 6
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr10:38,439,914...38,501,182
Ensembl chr10:38,440,080...38,498,757
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Acsm1
acyl-CoA synthetase medium-chain family member 1
ISO
SMPDB
SMP:00481
NCBI chr 1:173,985,715...174,020,565
Ensembl chr 1:173,984,672...174,025,495
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Acsm2
acyl-CoA synthetase medium-chain family member 2
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 1:173,916,368...173,955,116
Ensembl chr 1:173,916,368...173,955,116
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Acsm3
acyl-CoA synthetase medium-chain family member 3
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 1:174,133,260...174,159,966
Ensembl chr 1:174,133,288...174,160,184
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Acsm4
acyl-CoA synthetase medium-chain family member 4
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 1:174,053,931...174,078,345
Ensembl chr 1:174,053,931...174,078,341
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Acss1
acyl-CoA synthetase short-chain family member 1
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 3:139,450,383...139,500,325
Ensembl chr 3:139,450,383...139,500,325
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Acss2
acyl-CoA synthetase short-chain family member 2
ISO
RGD
PMID:17762044
RGD:2317576
NCBI chr 3:144,003,808...144,047,452
Ensembl chr 3:144,004,336...144,059,675
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Acss3
acyl-CoA synthetase short-chain family member 3
ISO
SMPDB
SMP:00480
NCBI chr 7:42,241,261...42,450,209
Ensembl chr 7:42,242,652...42,450,230
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Cpt1a
carnitine palmitoyltransferase 1A
TAS ISO
SMPDB RGD
PMID:19430727
SMP:00482, RGD:2317584
NCBI chr 1:200,564,634...200,627,059
Ensembl chr 1:200,565,613...200,627,055
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Cpt1b
carnitine palmitoyltransferase 1B
ISO
RGD
PMID:19430727
RGD:2317584
NCBI chr 7:120,491,354...120,500,833
Ensembl chr 7:120,491,354...120,500,404
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Cpt2
carnitine palmitoyltransferase 2
TAS ISO
SMPDB RGD
PMID:19430727
SMP:00052 SMP:00482, RGD:2317584
NCBI chr 5:122,664,677...122,682,126
Ensembl chr 5:122,664,677...122,682,095
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Crat
carnitine O-acetyltransferase
ISO
SMPDB
SMP:00052
NCBI chr 3:13,675,684...13,689,282
Ensembl chr 3:13,675,684...13,689,255
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Crot
carnitine O-octanoyltransferase
ISO
SMPDB
SMP:00052
NCBI chr 4:25,068,270...25,133,111
Ensembl chr 4:25,080,587...25,133,109
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Echs1
enoyl-CoA hydratase, short chain 1
IMP ISO
SMPDB RGD
PMID:12379132
SMP:00480 SMP:00481 SMP:00482, RGD:2317616
NCBI chr 1:194,895,036...194,903,863
Ensembl chr 1:194,895,036...194,903,884
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Etfa
electron transfer flavoprotein subunit alpha
ISO
RGD
PMID:14728676
RGD:2317589
NCBI chr 8:55,835,115...55,891,890
Ensembl chr 8:55,835,134...55,891,969
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Etfb
electron transfer flavoprotein subunit beta
ISO
RGD
PMID:14728676
RGD:2317589
NCBI chr 1:93,851,908...93,866,072
Ensembl chr 1:93,851,858...93,866,068
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Etfdh
electron transfer flavoprotein dehydrogenase
ISO
RGD
PMID:14728676
RGD:2317589
NCBI chr 2:164,740,547...164,762,754
Ensembl chr 2:164,729,749...164,762,745
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Hadh
hydroxyacyl-CoA dehydrogenase
IMP ISO
SMPDB RGD
PMID:17491019
SMP:00480 SMP:00481 SMP:00482, RGD:2302227
NCBI chr 2:219,787,935...219,830,335
Ensembl chr 2:219,787,927...219,830,353
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Hadha
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha
ISO
SMPDB RGD
PMID:10816122
SMP:00481 SMP:00482, RGD:2317625
NCBI chr 6:26,187,969...26,227,605
Ensembl chr 6:26,187,956...26,227,869
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Hadhb
hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta
ISO
SMPDB RGD
PMID:10816122
SMP:00481 SMP:00482, RGD:2317625
NCBI chr 6:26,153,572...26,187,668
Ensembl chr 6:26,153,578...26,184,869
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Hsd17b10
hydroxysteroid (17-beta) dehydrogenase 10
ISO
SMPDB
SMP:00480
NCBI chr X:21,089,142...21,091,603
Ensembl chr X:21,089,122...21,109,488
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Pex11g
peroxisomal biogenesis factor 11 gamma
ISO
SMPDB
SMP:00052
NCBI chr12:1,502,606...1,532,347
Ensembl chr12:1,503,646...1,512,585
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Pex13
peroxisomal biogenesis factor 13
ISO
SMPDB
SMP:00052
NCBI chr14:97,602,829...97,621,233
Ensembl chr14:97,603,539...97,621,262
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Pex14
peroxisomal biogenesis factor 14
ISO
SMPDB
SMP:00052
NCBI chr 5:159,399,776...159,536,260
Ensembl chr 5:159,399,776...159,536,272
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Slc25a20
solute carrier family 25 member 20
ISO
SMPDB RGD
PMID:19430727
SMP:00052 SMP:00481 SMP:00482, RGD:2317584
NCBI chr 8:109,365,056...109,386,512
Ensembl chr 8:109,365,002...109,386,512
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