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Pathways
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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:O-linked glycan biosynthetic pathway
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Accession:PW:0000194 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis of O-linked glycans. Sugars are serially added to a fully synthesized polypeptide chain. The initial step involves the transfer of N-acetylgalactosamine to the carboxy group of a serine or threonine. The location of the residue appears to be dictated by structure rather than amino acid signature.
Synonyms:related_synonym: KEGG:00512;   KEGG:00514


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O-linked glycan biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B3gnt6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 IEA KEGG rno:00512 NCBI chr 1:152,484,572...152,496,226
Ensembl chr 1:152,486,343...152,492,150 		JBrowse link
G B4galt1 beta-1,4-galactosyltransferase 1 IEA KEGG rno:00514 NCBI chr 5:55,935,614...55,982,461
Ensembl chr 5:55,935,615...55,982,461 		JBrowse link
G B4galt2 beta-1,4-galactosyltransferase 2 IEA KEGG rno:00514 NCBI chr 5:131,412,541...131,422,573
Ensembl chr 5:131,412,541...131,421,013 		JBrowse link
G B4galt3 beta-1,4-galactosyltransferase 3 IEA KEGG rno:00514 NCBI chr13:83,691,378...83,697,448
Ensembl chr13:83,691,446...83,697,448 		JBrowse link
G B4galt5 beta-1,4-galactosyltransferase 5 IEA KEGG rno:00512 NCBI chr 3:156,018,056...156,033,983
Ensembl chr 3:156,018,053...156,070,074 		JBrowse link
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 IEA KEGG rno:00512 NCBI chr 4:35,930,981...35,966,100
Ensembl chr 4:35,928,104...35,961,831 		JBrowse link
G C1galt1c1 C1GALT1-specific chaperone 1 IEA KEGG rno:00512 NCBI chr  X:117,378,123...117,382,620
Ensembl chr  X:117,375,525...117,382,787 		JBrowse link
G Chst10 carbohydrate sulfotransferase 10 IEA KEGG rno:00514 NCBI chr 9:41,092,805...41,122,737
Ensembl chr 9:41,092,808...41,122,503 		JBrowse link
G Colgalt1 collagen beta(1-O)galactosyltransferase 1 IEA KEGG rno:00514 NCBI chr16:18,319,796...18,332,106
Ensembl chr16:18,319,795...18,332,106 		JBrowse link
G Colgalt2 collagen beta(1-O)galactosyltransferase 2 IEA KEGG rno:00514 NCBI chr13:64,523,641...64,628,295
Ensembl chr13:64,523,658...64,627,549 		JBrowse link
G Fut4 fucosyltransferase 4 IEA KEGG rno:00514 NCBI chr 8:11,586,721...11,590,682
Ensembl chr 8:11,586,721...11,590,682 		JBrowse link
G Fut7 fucosyltransferase 7 IEA KEGG rno:00514 NCBI chr 3:8,237,687...8,242,273
Ensembl chr 3:8,239,384...8,242,260 		JBrowse link
G Fut9 fucosyltransferase 9 IEA KEGG rno:00514 NCBI chr 5:39,351,815...39,565,256
Ensembl chr 5:39,351,819...39,565,130 		JBrowse link
G Galnt1 polypeptide N-acetylgalactosaminyltransferase 1 IEA KEGG rno:00512 NCBI chr18:15,489,015...15,568,849
Ensembl chr18:15,489,020...15,568,245 		JBrowse link
G Galnt10 polypeptide N-acetylgalactosaminyltransferase 10 IEA KEGG rno:00512 NCBI chr10:41,821,216...41,967,618
Ensembl chr10:41,820,158...41,967,013 		JBrowse link
G Galnt11 polypeptide N-acetylgalactosaminyltransferase 11 IEA KEGG rno:00512 NCBI chr 4:9,837,629...9,871,141
Ensembl chr 4:9,837,629...9,871,140 		JBrowse link
G Galnt12 polypeptide N-acetylgalactosaminyltransferase 12 IEA KEGG rno:00512 NCBI chr 5:61,384,575...61,413,346
Ensembl chr 5:61,384,571...61,413,354 		JBrowse link
G Galnt13 polypeptide N-acetylgalactosaminyltransferase 13 IEA KEGG rno:00512 NCBI chr 3:38,903,695...39,560,683
Ensembl chr 3:38,974,490...39,558,803 		JBrowse link
G Galnt14 polypeptide N-acetylgalactosaminyltransferase 14 IEA KEGG rno:00512 NCBI chr 6:21,756,039...21,977,533
Ensembl chr 6:21,755,195...21,972,192 		JBrowse link
G Galnt16 polypeptide N-acetylgalactosaminyltransferase 16 IEA KEGG rno:00512 NCBI chr 6:100,168,943...100,250,718
Ensembl chr 6:100,170,306...100,250,705 		JBrowse link
G Galnt17 polypeptide N-acetylgalactosaminyltransferase 17 IEA KEGG rno:00512 NCBI chr12:25,323,230...25,781,897
Ensembl chr12:25,322,701...25,781,290 		JBrowse link
G Galnt18 polypeptide N-acetylgalactosaminyltransferase 18 IEA KEGG rno:00512 NCBI chr 1:165,593,180...165,904,268
Ensembl chr 1:165,593,187...165,904,268 		JBrowse link
G Galnt2 polypeptide N-acetylgalactosaminyltransferase 2 IEA KEGG rno:00512 NCBI chr19:52,213,226...52,324,816
Ensembl chr19:52,213,351...52,324,813 		JBrowse link
G Galnt3 polypeptide N-acetylgalactosaminyltransferase 3 IEA KEGG rno:00512 NCBI chr 3:50,742,500...50,779,266
Ensembl chr 3:50,742,512...50,766,268 		JBrowse link
G Galnt4 polypeptide N-acetylgalactosaminyltransferase 4 IEA KEGG rno:00512 NCBI chr 7:33,925,229...33,927,770 JBrowse link
G Galnt5 polypeptide N-acetylgalactosaminyltransferase 5 IEA KEGG rno:00512 NCBI chr 3:42,573,622...42,619,881
Ensembl chr 3:42,573,622...42,619,881 		JBrowse link
G Galnt6 polypeptide N-acetylgalactosaminyltransferase 6 IEA KEGG rno:00512 NCBI chr 7:131,789,836...131,828,077
Ensembl chr 7:131,789,839...131,819,661 		JBrowse link
G Galnt7 polypeptide N-acetylgalactosaminyltransferase 7 IEA KEGG rno:00512 NCBI chr16:32,578,643...32,703,189
Ensembl chr16:32,578,690...32,702,690 		JBrowse link
G Galntl5 polypeptide N-acetylgalactosaminyltransferase-like 5 IEA KEGG rno:00512 NCBI chr 4:9,873,426...9,923,297
Ensembl chr 4:9,873,428...9,923,136 		JBrowse link
G Galntl6 polypeptide N-acetylgalactosaminyltransferase-like 6 IEA KEGG rno:00512 NCBI chr16:31,192,880...32,443,979
Ensembl chr16:31,186,462...32,441,960 		JBrowse link
G Gcnt1 glucosaminyl (N-acetyl) transferase 1 IEA KEGG rno:00512 NCBI chr 1:214,718,344...214,755,735
Ensembl chr 1:214,718,293...214,758,776 		JBrowse link
G Gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type IEA KEGG rno:00512 NCBI chr 8:70,689,173...70,696,476
Ensembl chr 8:70,686,844...70,699,562 		JBrowse link
G Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA KEGG rno:00514 NCBI chr12:14,030,551...14,038,996
Ensembl chr12:14,018,333...14,039,008 		JBrowse link
G Mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA KEGG rno:00514 NCBI chr 7:110,310,810...110,328,653
Ensembl chr 7:110,310,812...110,328,653 		JBrowse link
G Mgat5b alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B IEA KEGG rno:00514 NCBI chr10:102,120,757...102,190,235
Ensembl chr10:102,120,445...102,190,233 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase IEA KEGG rno:00514 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 IEA KEGG rno:00514 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Pofut1 protein O-fucosyltransferase 1 IEA KEGG rno:00514 NCBI chr 3:141,708,618...141,735,558
Ensembl chr 3:141,708,644...141,734,786 		JBrowse link
G Pofut2 protein O-fucosyltransferase 2 IEA KEGG rno:00514 NCBI chr20:11,367,073...11,377,788
Ensembl chr20:11,367,096...11,377,743 		JBrowse link
G Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) IEA KEGG rno:00514 NCBI chr 5:129,634,274...129,644,150
Ensembl chr 5:129,634,294...129,644,149 		JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 IEA KEGG rno:00514 NCBI chr 3:15,520,717...15,538,579
Ensembl chr 3:15,520,481...15,538,581 		JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 IEA KEGG rno:00514 NCBI chr 6:106,755,462...106,794,849
Ensembl chr 6:106,755,462...106,794,849 		JBrowse link
G Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase IEA KEGG rno:00514 NCBI chr10:106,047,221...106,050,331
Ensembl chr10:106,047,221...106,050,345 		JBrowse link
G St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 IEA KEGG rno:00512 NCBI chr 7:98,845,270...98,913,409
Ensembl chr 7:98,845,270...98,913,236 		JBrowse link
G St3gal2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 IEA KEGG rno:00512 NCBI chr19:38,888,851...38,939,874
Ensembl chr19:38,923,999...38,939,869 		JBrowse link
G St3gal3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 IEA KEGG rno:00514 NCBI chr 5:131,470,348...131,670,794
Ensembl chr 5:131,470,348...131,670,810 		JBrowse link
G St6gal1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 IEA KEGG rno:00514 NCBI chr11:77,526,837...77,653,474
Ensembl chr11:77,526,837...77,653,310 		JBrowse link
G St6gal2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 IEA KEGG rno:00514 NCBI chr 9:9,181,744...9,274,161
Ensembl chr 9:9,182,399...9,269,697 		JBrowse link
G St6galnac1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 IEA KEGG rno:00512 NCBI chr10:101,972,656...101,983,053
Ensembl chr10:101,972,668...101,983,053 		JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 IEA KEGG rno:00514 NCBI chr 9:88,801,344...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 IEA KEGG rno:00514 NCBI chr 9:88,791,216...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a3 UDP glycosyltransferase 1 family, polypeptide A3 IEA KEGG rno:00514 NCBI chr 9:88,780,328...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 IEA KEGG rno:00514 NCBI chr 9:88,762,250...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 IEA KEGG rno:00514 NCBI chr 9:88,747,213...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a7c UDP glucuronosyltransferase 1 family, polypeptide A7C IEA KEGG rno:00514 NCBI chr 9:88,739,577...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a8 UDP glucuronosyltransferase family 1 member A8 IEA KEGG rno:00514 NCBI chr 9:88,727,094...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 IEA KEGG rno:00514 NCBI chr 9:88,696,981...88,808,465
Ensembl chr 9:88,713,184...88,808,465 		JBrowse link
G Ugt2a1 UDP glucuronosyltransferase family 2 member A1 IEA KEGG rno:00514 NCBI chr14:20,521,018...20,545,934
Ensembl chr14:20,517,951...20,545,531 		JBrowse link
G Ugt2a3 UDP glucuronosyltransferase family 2 member A3 IEA KEGG rno:00514 NCBI chr14:20,572,793...20,590,795
Ensembl chr14:20,572,808...20,590,729 		JBrowse link
G Ugt2b UDP glycosyltransferase 2 family, polypeptide B IEA KEGG rno:00514 NCBI chr14:20,630,572...20,665,062
Ensembl chr14:20,630,250...20,651,776 		JBrowse link
G Ugt2b1 UDP glucuronosyltransferase 2 family, polypeptide B1 IEA KEGG rno:00514 NCBI chr14:21,024,035...21,035,784
Ensembl chr14:21,024,006...21,035,986 		JBrowse link
G Ugt2b37 UDP-glucuronosyltransferase 2 family, member 37 IEA KEGG rno:00514 NCBI chr14:20,817,285...20,833,917
Ensembl chr14:20,817,285...20,833,917 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1854
      carbohydrate metabolic pathway 526
        glycan metabolic pathway 190
          O-linked glycan biosynthetic pathway 62
paths to the root