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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:retinol metabolic pathway
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Accession:PW:0000141 term browser browse the term
Definition:Those reactions involving retinol, a fat-soluble vitamin that is the dietary form of vitamin A and is important for bone growth and in vision. Precursors of retinol such as carotenoid or retinyl esters are derived from diet and are converted to retinal and retinol, respectively.
Synonyms:related_synonym: Retinoid metabolism and transport;   retinol metabolic process

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retinol metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca1 ATP binding cassette subfamily A member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr 5:67,678,267...67,801,162
Ensembl chr 5:67,681,297...67,801,170
JBrowse link
G Adh4 alcohol dehydrogenase 4 (class II), pi polypeptide IEA KEGG rno:00830 NCBI chr 2:226,948,717...226,966,747
Ensembl chr 2:226,947,466...226,987,591
JBrowse link
G Adh5 alcohol dehydrogenase 5 (class III), chi polypeptide IEA KEGG rno:00830 NCBI chr 2:226,975,184...226,987,591
Ensembl chr 2:226,947,466...226,987,591
JBrowse link
G Adh6 alcohol dehydrogenase 6 (class V) IEA KEGG rno:00830 NCBI chr 2:226,903,208...226,934,564
Ensembl chr 2:226,903,250...226,934,534
JBrowse link
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide IEA KEGG rno:00830 NCBI chr 2:226,748,724...226,763,183
Ensembl chr 2:226,741,788...226,763,182
JBrowse link
G Akr1b10 aldo-keto reductase family 1 member B10 IDA
ISO
RGD PMID:20709016 PMID:16970545 RGD:6903952, RGD:6903957 NCBI chr 4:63,038,459...63,060,336
Ensembl chr 4:63,040,169...63,053,852
JBrowse link
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO SMPDB SMP:00074 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 IDA
IEA
ISO
KEGG
SMPDB
RGD
PMID:12547725 SMP:00074 rno:00830, RGD:1576367 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Awat1 acyl-CoA wax alcohol acyltransferase 1 ISO SMPDB SMP:00074 NCBI chr  X:65,668,205...65,674,450
Ensembl chr  X:65,668,205...65,674,450
JBrowse link
G Awat2 acyl-CoA wax alcohol acyltransferase 2 IEA KEGG rno:00830 NCBI chr  X:65,481,676...65,490,562
Ensembl chr  X:65,481,929...65,527,625
JBrowse link
G Bco1 beta-carotene oxygenase 1 ISO
TAS
IEA
KEGG
SMPDB
RGD
PMID:21569862 PMID:21718801 SMP:00074 rno:00830, RGD:6903956, RGD:6484679 NCBI chr19:45,149,250...45,186,102
Ensembl chr19:45,149,265...45,186,101
JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:21718801 RGD:6484679 NCBI chr 4:17,317,343...17,410,084
Ensembl chr 4:17,354,466...17,513,903
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEA KEGG rno:00830 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 IEA KEGG rno:00830 NCBI chr 8:58,075,367...58,082,255
Ensembl chr 8:58,075,367...58,082,312
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 1:235,471,368...235,475,204
Ensembl chr 1:235,471,298...235,475,204
JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 IEA KEGG rno:00830 NCBI chr 4:117,041,808...117,058,628
Ensembl chr 4:117,041,808...117,058,628
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 IEA KEGG rno:00830 NCBI chr 1:235,458,961...235,468,433
Ensembl chr 1:235,459,356...235,466,842
JBrowse link
G Cyp2a1 cytochrome P450, family 2, subfamily a, polypeptide 1 IEA KEGG rno:00830 NCBI chr 1:82,231,611...82,244,887
Ensembl chr 1:82,231,611...82,244,887
JBrowse link
G Cyp2a2 cytochrome P450, family 2, subfamily a, polypeptide 2 IEA KEGG rno:00830 NCBI chr 1:82,263,833...82,289,487
Ensembl chr 1:82,263,833...82,289,487
JBrowse link
G Cyp2a3 cytochrome P450, family 2, subfamily a, polypeptide 3 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 1:82,171,914...82,179,980
Ensembl chr 1:82,169,949...82,179,979
JBrowse link
G Cyp2b1 cytochrome P450, family 2, subfamily b, polypeptide 1 IEA KEGG rno:00830 NCBI chr 1:81,518,387...81,544,999
Ensembl chr 1:81,518,408...81,542,052
JBrowse link
G Cyp2b12 cytochrome P450, family 2, subfamily b, polypeptide 12 IEA KEGG rno:00830 NCBI chr 1:82,007,609...82,019,409
Ensembl chr 1:82,007,609...82,080,480
JBrowse link
G Cyp2b2 cytochrome P450, family 2, subfamily b, polypeptide 2 IEA KEGG rno:00830 NCBI chr 1:81,594,534...81,608,567
Ensembl chr 1:81,594,555...81,608,566
JBrowse link
G Cyp2b21 cytochrome P450, family 2, subfamily b, polypeptide 21 IEA KEGG rno:00830 NCBI chr 1:81,886,097...81,915,066
Ensembl chr 1:81,886,098...81,915,066
JBrowse link
G Cyp2b3 cytochrome P450, family 2, subfamily b, polypeptide 3 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 1:81,652,762...81,732,153
Ensembl chr 1:81,652,787...81,732,143
JBrowse link
G Cyp2c11 cytochrome P450, subfamily 2, polypeptide 11 IEA KEGG rno:00830 NCBI chr 1:236,762,719...236,799,069
Ensembl chr 1:236,762,842...236,799,066
JBrowse link
G Cyp2c12 cytochrome P450, family 2, subfamily c, polypeptide 12 IEA KEGG rno:00830 NCBI chr 1:238,699,859...238,757,011
Ensembl chr 1:238,699,854...238,757,019
JBrowse link
G Cyp2c13 cytochrome P450, family 2, subfamily c, polypeptide 13 IEA KEGG rno:00830 NCBI chr 1:238,786,764...238,867,195
Ensembl chr 1:238,786,765...238,867,191
JBrowse link
G Cyp2c22 cytochrome P450, family 2, subfamily c, polypeptide 22 IEA KEGG rno:00830 NCBI chr 1:238,991,698...239,031,323
Ensembl chr 1:238,991,610...239,021,738
JBrowse link
G Cyp2c23 cytochrome P450, family 2, subfamily c, polypeptide 23 IEA KEGG rno:00830 NCBI chr 1:242,889,218...242,913,869
Ensembl chr 1:242,889,224...242,913,858
JBrowse link
G Cyp2c7 cytochrome P450, family 2, subfamily c, polypeptide 7 IEA KEGG rno:00830 NCBI chr 1:237,332,641...237,388,714
Ensembl chr 1:237,332,659...237,388,709
JBrowse link
G Cyp3a18 cytochrome P450, family 3, subfamily a, polypeptide 18 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr12:8,880,509...8,930,382
Ensembl chr12:8,880,528...8,930,381
JBrowse link
G Cyp3a2 cytochrome P450, family 3, subfamily a, polypeptide 2 IEA KEGG rno:00830 NCBI chr12:9,207,978...9,230,064
Ensembl chr12:9,015,383...9,285,008
JBrowse link
G Cyp3a23-3a1 cytochrome P450, family 3, subfamily a, polypeptide 23-polypeptide 1 IEA KEGG rno:00830 NCBI chr12:9,256,159...9,285,020
Ensembl chr12:9,254,475...9,285,030
Ensembl chr12:9,254,475...9,285,030
JBrowse link
G Cyp3a9 cytochrome P450, family 3, subfamily a, polypeptide 9 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr12:16,806,222...16,846,428
Ensembl chr12:16,806,207...16,846,422
JBrowse link
G Cyp4a1 cytochrome P450, family 4, subfamily a, polypeptide 1 IEA KEGG rno:00830 NCBI chr 5:129,123,323...129,137,464
Ensembl chr 5:129,123,336...129,137,464
JBrowse link
G Cyp4a2 cytochrome P450, family 4, subfamily a, polypeptide 2 IEA KEGG rno:00830 NCBI chr 5:128,922,355...128,934,188
Ensembl chr 5:128,923,615...128,934,165
JBrowse link
G Cyp4a3 cytochrome P450, family 4, subfamily a, polypeptide 3 IEA KEGG rno:00830 NCBI chr 5:129,097,571...129,115,488
Ensembl chr 5:129,097,926...129,115,463
JBrowse link
G Cyp4a8 cytochrome P450, family 4, subfamily a, polypeptide 8 IEA KEGG rno:00830 NCBI chr 5:128,702,130...128,733,476
Ensembl chr 5:128,702,131...128,733,476
JBrowse link
G Dgat1 diacylglycerol O-acyltransferase 1 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 7:108,223,860...108,235,413
Ensembl chr 7:108,218,524...108,234,299
JBrowse link
G Dhrs3 dehydrogenase/reductase 3 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 5:156,747,939...156,782,420
Ensembl chr 5:156,747,962...156,782,417
JBrowse link
G Dhrs4 dehydrogenase/reductase 4 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr15:28,966,544...28,978,135
Ensembl chr15:28,966,553...28,978,127
JBrowse link
G Dhrs9 dehydrogenase/reductase 9 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 3:54,147,834...54,170,052
Ensembl chr 3:54,147,803...54,220,241
JBrowse link
G Dnajb11 DnaJ heat shock protein family (Hsp40) member B11 ISO SMPDB SMP:00074 NCBI chr11:78,151,750...78,168,259
Ensembl chr11:78,150,429...78,180,407
JBrowse link
G Erp29 endoplasmic reticulum protein 29 ISO SMPDB SMP:00074 NCBI chr12:35,089,698...35,095,952
Ensembl chr12:35,089,707...35,096,376
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 ISO SMPDB SMP:00074 NCBI chr 7:21,110,431...21,124,762
Ensembl chr 7:21,110,457...21,124,788
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO SMPDB SMP:00074 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Hyou1 hypoxia up-regulated 1 ISO SMPDB SMP:00074 NCBI chr 8:44,706,073...44,718,189
Ensembl chr 8:44,706,263...44,718,186
JBrowse link
G Lrat lecithin retinol acyltransferase TAS
IEA
ISO
KEGG
SMPDB
RGD
PMID:21718801 SMP:00074 rno:00830, RGD:6484679 NCBI chr 2:168,264,093...168,273,155
Ensembl chr 2:168,266,877...168,273,619
JBrowse link
G Pdia2 protein disulfide isomerase family A, member 2 ISO SMPDB SMP:00074 NCBI chr10:15,215,824...15,218,937
Ensembl chr10:15,215,824...15,220,931
JBrowse link
G Pdia4 protein disulfide isomerase family A, member 4 ISO SMPDB SMP:00074 NCBI chr 4:76,803,198...76,822,245
Ensembl chr 4:76,803,198...76,822,107
JBrowse link
G Pdia6 protein disulfide isomerase family A, member 6 ISO SMPDB SMP:00074 NCBI chr 6:40,062,980...40,080,223
Ensembl chr 6:40,062,926...40,080,613
JBrowse link
G Plb1 phospholipase B1 IDA
TAS
RGD PMID:8117729 PMID:21718801 RGD:6903951, RGD:6484679 NCBI chr 6:24,087,051...24,227,167
Ensembl chr 6:24,089,214...24,210,117
JBrowse link
G Pnlip pancreatic lipase TAS RGD PMID:21718801 RGD:6484679 NCBI chr 1:257,774,012...257,811,656
Ensembl chr 1:257,798,581...257,811,654
JBrowse link
G Pnliprp2 pancreatic lipase related protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr 1:257,897,766...257,916,434
Ensembl chr 1:257,897,766...257,916,434
JBrowse link
G Pnpla4 patatin like phospholipase domain containing 4 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr  X:42,313,554...42,318,451
Ensembl chr  X:42,305,373...42,318,552
JBrowse link
G Ppib peptidylprolyl isomerase B ISO SMPDB SMP:00074 NCBI chr 8:66,603,877...66,609,734
Ensembl chr 8:66,603,861...66,630,428
JBrowse link
G Rbp2 retinol binding protein 2 ISO RGD PMID:21718801 RGD:6484679 NCBI chr 8:99,079,293...99,104,489
Ensembl chr 8:99,079,104...99,104,473
JBrowse link
G Rdh10 retinol dehydrogenase 10 IEA KEGG rno:00830 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Rdh11 retinol dehydrogenase 11 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
JBrowse link
G Rdh12 retinol dehydrogenase 12 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 6:98,015,465...98,028,388
Ensembl chr 6:98,015,465...98,028,388
JBrowse link
G Rdh16 retinol dehydrogenase 16 ISO SMPDB SMP:00074 NCBI chr 7:63,616,711...63,625,053
Ensembl chr 7:63,597,536...63,624,124
JBrowse link
G Rdh5 retinol dehydrogenase 5 IEA KEGG rno:00830 NCBI chr 7:1,341,172...1,346,863
Ensembl chr 7:1,340,934...1,351,558
JBrowse link
G Rdh7 retinol dehydrogenase 7 IEA KEGG rno:00830 NCBI chr 7:63,676,016...63,689,375
Ensembl chr 7:63,675,579...63,689,392
JBrowse link
G Rdh8 retinol dehydrogenase 8 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 8:19,353,191...19,360,462
Ensembl chr 8:19,353,191...19,360,462
JBrowse link
G Retsat retinol saturase IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 4:104,653,306...104,662,069
Ensembl chr 4:104,653,155...104,668,310
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Scarb1 scavenger receptor class B, member 1 ISO RGD PMID:21718801 RGD:6484679 NCBI chr12:31,296,143...31,362,649
Ensembl chr12:31,296,156...31,362,647
JBrowse link
G Sdf2l1 stromal cell-derived factor 2-like 1 ISO SMPDB SMP:00074 NCBI chr11:83,872,659...83,874,902
Ensembl chr11:83,872,659...83,874,902
JBrowse link
G Ugt1a1 UDP glucuronosyltransferase family 1 member A1 IEA
ISO
KEGG
SMPDB
SMP:00074 rno:00830 NCBI chr 9:88,801,344...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a2 UDP glucuronosyltransferase 1 family, polypeptide A2 IEA KEGG rno:00830 NCBI chr 9:88,791,216...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a3 UDP glycosyltransferase 1 family, polypeptide A3 IEA KEGG rno:00830 NCBI chr 9:88,780,328...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a5 UDP glucuronosyltransferase family 1 member A5 IEA KEGG rno:00830 NCBI chr 9:88,762,250...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a6 UDP glucuronosyltransferase family 1 member A6 IEA KEGG rno:00830 NCBI chr 9:88,747,213...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a7c UDP glucuronosyltransferase 1 family, polypeptide A7C IEA KEGG rno:00830 NCBI chr 9:88,739,577...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a8 UDP glucuronosyltransferase family 1 member A8 IEA KEGG rno:00830 NCBI chr 9:88,727,094...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt1a9 UDP glucuronosyltransferase family 1 member A9 IEA KEGG rno:00830 NCBI chr 9:88,696,981...88,808,465
Ensembl chr 9:88,713,184...88,808,465
JBrowse link
G Ugt2a1 UDP glucuronosyltransferase family 2 member A1 IEA KEGG rno:00830 NCBI chr14:20,521,018...20,545,934
Ensembl chr14:20,517,951...20,545,531
JBrowse link
G Ugt2a3 UDP glucuronosyltransferase family 2 member A3 IEA KEGG rno:00830 NCBI chr14:20,572,793...20,590,795
Ensembl chr14:20,572,808...20,590,729
JBrowse link
G Ugt2b UDP glycosyltransferase 2 family, polypeptide B IEA KEGG rno:00830 NCBI chr14:20,630,572...20,665,062
Ensembl chr14:20,630,250...20,651,776
JBrowse link
G Ugt2b1 UDP glucuronosyltransferase 2 family, polypeptide B1 IEA KEGG rno:00830 NCBI chr14:21,024,035...21,035,784
Ensembl chr14:21,024,006...21,035,986
JBrowse link
G Ugt2b37 UDP-glucuronosyltransferase 2 family, member 37 IEA KEGG rno:00830 NCBI chr14:20,817,285...20,833,917
Ensembl chr14:20,817,285...20,833,917
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6096
    classic metabolic pathway 1854
      metabolic pathway pertinent to the brain 131
        retinoid metabolic pathway 97
          retinol metabolic pathway 82
Path 2
Term Annotations click to browse term
  pathway 6096
    regulatory pathway 3873
      homeostasis pathway 1774
        organic chemical homeostasis pathway 439
          vitamin homeostasis 150
            vitamin A homeostasis 150
              retinoid metabolic pathway 97
                retinol metabolic pathway 82
paths to the root