PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: long term potentiation
Accession: PW:0000060
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Definition: Long-term potentiation (LTP) is a strengthening of the synapse that can last from hours to days and months. It is thought to underlie information storage and constitute the cellular basis of learning and memory. LTP engages numerous cascades of events on either side of the synapse and is accompanied by changes in gene expression.
Synonyms: related_synonym: LTP; Long-term potentiation; long-term synaptic potentiation
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Adcy1
adenylate cyclase 1
IEA
KEGG
rno:04720
NCBI chr14:81,911,240...82,020,594
Ensembl chr14:81,911,099...82,028,969
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Adcy8
adenylate cyclase 8
IEA
KEGG
rno:04720
NCBI chr 7:96,417,310...96,665,911
Ensembl chr 7:96,417,324...96,665,911
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Agt
angiotensinogen
IMP
RGD
PMID:11282364
RGD:1582105
NCBI chr19:52,529,139...52,549,618
Ensembl chr19:52,529,185...52,540,977
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Atf4
activating transcription factor 4
IEA
KEGG
rno:04720
NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
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Braf
B-Raf proto-oncogene, serine/threonine kinase
IEA
KEGG
rno:04720
NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
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Cacna1c
calcium voltage-gated channel subunit alpha1 C
IEA
KEGG
rno:04720
NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
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Calm1
calmodulin 1
IEA
KEGG
rno:04720
NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227
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Calm2
calmodulin 2
IEA
KEGG
rno:04720
NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287 Ensembl chr15:7,091,567...7,104,287
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Calm3
calmodulin 3
IEA
KEGG
rno:04720
NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207
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Calml3
calmodulin-like 3
IEA
KEGG
rno:04720
NCBI chr17:66,419,844...66,423,083
Ensembl chr17:66,419,882...66,423,175
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Calml5
calmodulin-like 5
IEA
KEGG
rno:04720
NCBI chr17:66,394,433...66,395,352
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Camk2a
calcium/calmodulin-dependent protein kinase II alpha
IEA
KEGG
rno:04720
NCBI chr18:54,378,642...54,441,120
Ensembl chr18:54,378,784...54,438,994
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Camk2b
calcium/calmodulin-dependent protein kinase II beta
IEA
KEGG
rno:04720
NCBI chr14:80,845,206...80,934,172
Ensembl chr14:80,845,238...80,933,994
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Camk2d
calcium/calmodulin-dependent protein kinase II delta
IEA
KEGG
rno:04720
NCBI chr 2:215,023,785...215,287,351
Ensembl chr 2:215,024,004...215,286,178
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Camk2g
calcium/calmodulin-dependent protein kinase II gamma
IEA
KEGG
rno:04720
NCBI chr15:3,504,017...3,563,050
Ensembl chr15:3,504,085...3,563,050
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Camk4
calcium/calmodulin-dependent protein kinase IV
IEA
KEGG
rno:04720
NCBI chr18:24,582,988...24,811,918
Ensembl chr18:24,585,269...24,802,487
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Chp1
calcineurin-like EF-hand protein 1
IEA
KEGG
rno:04720
NCBI chr 3:106,536,009...106,571,255
Ensembl chr 3:106,536,004...106,571,251
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Chp1l1
calcineurin-like EF-hand protein 1 like 1
IEA
KEGG
rno:04720
NCBI chr 5:68,570,894...68,571,875
Ensembl chr 5:68,571,232...68,571,819
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Chp2
calcineurin-like EF hand protein 2
IEA
KEGG
rno:04720
NCBI chr 1:176,757,945...176,772,443
Ensembl chr 1:176,757,876...176,772,139
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Crebbp
CREB binding protein
IEA
KEGG
rno:04720
NCBI chr10:11,335,551...11,461,888
Ensembl chr10:11,335,953...11,461,888
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Egr1
early growth response 1
IMP
RGD
PMID:16930406
RGD:1626499
NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766
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Ep300
E1A binding protein p300
IEA
KEGG
rno:04720
NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088 Ensembl chr 7:113,106,247...113,136,088
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Gnaq
G protein subunit alpha q
IEA
KEGG
rno:04720
NCBI chr 1:213,425,631...213,671,947
Ensembl chr 1:213,424,465...213,667,672
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Gria1
glutamate ionotropic receptor AMPA type subunit 1
IEA
KEGG
rno:04720
NCBI chr10:41,210,713...41,527,283
Ensembl chr10:41,210,713...41,527,283
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Gria2
glutamate ionotropic receptor AMPA type subunit 2
IEA
KEGG
rno:04720
NCBI chr 2:165,949,379...166,069,510
Ensembl chr 2:165,947,521...166,069,510
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Grik1
glutamate ionotropic receptor kainate type subunit 1
ISO
RGD
PMID:10580501
RGD:1642498
NCBI chr11:27,169,739...27,571,131
Ensembl chr11:27,169,740...27,570,645
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Grin1
glutamate ionotropic receptor NMDA type subunit 1
IEA
KEGG
rno:04720
NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603
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Grin2a
glutamate ionotropic receptor NMDA type subunit 2A
IMP IEA
KEGG RGD
PMID:17655746 PMID:16904707
rno:04720, RGD:1642204 , RGD:1642207
NCBI chr10:5,629,683...6,053,262
Ensembl chr10:5,631,369...6,044,637
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Grin2b
glutamate ionotropic receptor NMDA type subunit 2B
IMP IEA
KEGG RGD
PMID:17655746 PMID:16904707 PMID:20164351
rno:04720, RGD:1642204 , RGD:1642207 , RGD:2325882
NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279
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Grin2c
glutamate ionotropic receptor NMDA type subunit 2C
IEA
KEGG
rno:04720
NCBI chr10:100,488,430...100,507,083
Ensembl chr10:100,488,431...100,506,427
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Grin2d
glutamate ionotropic receptor NMDA type subunit 2D
IEA
KEGG
rno:04720
NCBI chr 1:96,306,871...96,346,994
Ensembl chr 1:96,308,365...96,344,793
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Grm1
glutamate metabotropic receptor 1
IEA
KEGG
rno:04720
NCBI chr 1:5,058,285...5,453,170
Ensembl chr 1:5,058,292...5,453,170
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Grm5
glutamate metabotropic receptor 5
IEA
KEGG
rno:04720
NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274
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Hras
HRas proto-oncogene, GTPase
IEA
KEGG
rno:04720
NCBI chr 1:196,290,127...196,299,823
Ensembl chr 1:196,296,263...196,300,615
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Itpr1
inositol 1,4,5-trisphosphate receptor, type 1
IEA
KEGG
rno:04720
NCBI chr 4:141,187,377...141,554,240
Ensembl chr 4:141,187,418...141,510,491
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Itpr2
inositol 1,4,5-trisphosphate receptor, type 2
IEA
KEGG
rno:04720
NCBI chr 4:179,028,594...179,434,657
Ensembl chr 4:179,027,281...179,404,164
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Itpr3
inositol 1,4,5-trisphosphate receptor, type 3
IEA
KEGG
rno:04720
NCBI chr20:5,136,968...5,202,339
Ensembl chr20:5,136,441...5,202,337
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Kcnd1
potassium voltage-gated channel subfamily D member 1
TAS
RGD
PMID:16141270
RGD:1581430
NCBI chr X:14,661,688...14,678,745
Ensembl chr X:14,662,357...14,677,233
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Kcnd2
potassium voltage-gated channel subfamily D member 2
TAS
RGD
PMID:16141270
RGD:1581430
NCBI chr 4:49,775,812...50,277,746
Ensembl chr 4:49,776,246...50,277,728
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Kcnd3
potassium voltage-gated channel subfamily D member 3
TAS
RGD
PMID:16141270
RGD:1581430
NCBI chr 2:192,937,950...193,155,345
Ensembl chr 2:192,937,950...193,155,345
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Kras
KRAS proto-oncogene, GTPase
IEA
KEGG
rno:04720
NCBI chr 4:178,185,418...178,218,484
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Lnpep
leucyl and cystinyl aminopeptidase
IMP
RGD
PMID:11282364
RGD:1582105
NCBI chr 1:58,258,642...58,355,532
Ensembl chr 1:58,258,642...58,354,544
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Map2k1
mitogen activated protein kinase kinase 1
IEA
KEGG
rno:04720
NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
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Map2k2
mitogen activated protein kinase kinase 2
IEA
KEGG
rno:04720
NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243
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Mapk1
mitogen activated protein kinase 1
IEA
KEGG
rno:04720
NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
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Mapk3
mitogen activated protein kinase 3
IEA
KEGG
rno:04720
NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
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Nras
NRAS proto-oncogene, GTPase
IEA
KEGG
rno:04720
NCBI chr 2:190,582,885...190,593,509
Ensembl chr 2:190,582,918...190,591,626
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Plcb1
phospholipase C beta 1
IEA
KEGG
rno:04720
NCBI chr 3:122,059,988...122,772,896
Ensembl chr 3:122,060,031...122,772,869
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Plcb2
phospholipase C, beta 2
IEA
KEGG
rno:04720
NCBI chr 3:105,683,676...105,704,384
Ensembl chr 3:105,684,815...105,704,302
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Plcb3
phospholipase C beta 3
IEA
KEGG
rno:04720
NCBI chr 1:204,143,257...204,160,384
Ensembl chr 1:204,144,956...204,160,228
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Plcb4
phospholipase C, beta 4
IEA
KEGG
rno:04720
NCBI chr 3:122,952,965...123,322,522
Ensembl chr 3:122,953,196...123,322,392
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Ppp1ca
protein phosphatase 1 catalytic subunit alpha
IEA
KEGG
rno:04720
NCBI chr 1:201,485,117...201,488,734
Ensembl chr 1:201,485,085...201,497,327
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Ppp1cb
protein phosphatase 1 catalytic subunit beta
IEA
KEGG
rno:04720
NCBI chr 6:23,958,813...23,992,841
Ensembl chr 6:23,960,998...23,992,824
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Ppp1cc
protein phosphatase 1 catalytic subunit gamma
IEA
KEGG
rno:04720
NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553
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Ppp1r12a
protein phosphatase 1, regulatory subunit 12A
IEA
KEGG
rno:04720
NCBI chr 7:43,482,808...43,593,689
Ensembl chr 7:43,482,803...43,593,425
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Ppp1r1a
protein phosphatase 1, regulatory (inhibitor) subunit 1A
IEA
KEGG
rno:04720
NCBI chr 7:134,654,578...134,662,236
Ensembl chr 7:134,654,579...134,662,230
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Ppp3ca
protein phosphatase 3 catalytic subunit alpha
IEA
KEGG
rno:04720
NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
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Ppp3cb
protein phosphatase 3 catalytic subunit beta
IEA
KEGG
rno:04720
NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981
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Ppp3cc
protein phosphatase 3 catalytic subunit gamma
IEA
KEGG
rno:04720
NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832
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Ppp3r1
protein phosphatase 3, regulatory subunit B, alpha
IEA
KEGG
rno:04720
NCBI chr14:91,556,743...91,606,391
Ensembl chr14:91,604,121...91,606,907
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Ppp3r2
protein phosphatase 3, regulatory subunit B, beta
IEA
KEGG
rno:04720
NCBI chr 5:64,026,903...64,027,898
Ensembl chr 5:64,026,903...64,032,548
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Prkaca
protein kinase cAMP-activated catalytic subunit alpha
IEA
KEGG
rno:04720
NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
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Prkacb
protein kinase cAMP-activated catalytic subunit beta
IEA
KEGG
rno:04720
NCBI chr 2:235,636,878...235,726,928
Ensembl chr 2:235,636,885...235,726,198
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Prkca
protein kinase C, alpha
IEA
KEGG
rno:04720
NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
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Prkcb
protein kinase C, beta
IEA
KEGG
rno:04720
NCBI chr 1:176,832,173...177,163,539
Ensembl chr 1:176,832,226...177,163,536
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Prkcg
protein kinase C, gamma
IEA
KEGG
rno:04720
NCBI chr 1:65,832,851...65,860,676
Ensembl chr 1:65,832,855...65,859,384
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Prkx
protein kinase cAMP-dependent X-linked catalytic subunit
IEA
KEGG
rno:04720
NCBI chr X:41,823,349...41,866,844
Ensembl chr X:41,823,355...41,866,669
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Ptk2
protein tyrosine kinase 2
IMP
RGD
PMID:12764094
RGD:2292620
NCBI chr 7:105,126,725...105,331,848
Ensembl chr 7:105,126,728...105,331,783
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Raf1
Raf-1 proto-oncogene, serine/threonine kinase
IEA
KEGG
rno:04720
NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317
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Rap1a
RAP1A, member of RAS oncogene family
IEA
KEGG
rno:04720
NCBI chr 2:193,208,631...193,286,513
Ensembl chr 2:193,208,635...193,286,501
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Rap1b
RAP1B, member of RAS oncogene family
IEA
KEGG
rno:04720
NCBI chr 7:53,423,039...53,456,349
Ensembl chr 7:53,423,130...53,456,370
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Rapgef3
Rap guanine nucleotide exchange factor 3
IEA
KEGG
rno:04720
NCBI chr 7:128,875,772...128,898,203
Ensembl chr 7:128,875,773...128,898,521
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RGD1565588
similar to calcium binding protein P22
IEA
KEGG
rno:04720
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Rps6ka1
ribosomal protein S6 kinase A1
IEA
KEGG
rno:04720
NCBI chr 5:146,079,018...146,118,272
Ensembl chr 5:146,079,021...146,118,272
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Rps6ka2
ribosomal protein S6 kinase A2
IEA
KEGG
rno:04720
NCBI chr 1:52,631,582...52,906,739
Ensembl chr 1:52,631,736...52,906,739
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Rps6ka3
ribosomal protein S6 kinase A3
IEA
KEGG
rno:04720
NCBI chr X:35,517,306...35,623,296
Ensembl chr X:35,517,306...35,623,207
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Rps6ka6
ribosomal protein S6 kinase A6
IEA
KEGG
rno:04720
NCBI chr X:76,353,316...76,454,502
Ensembl chr X:76,353,760...76,454,484
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