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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:pyrimidine metabolic pathway
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Accession:PW:0000032 term browser browse the term
Definition:Those metabolic reactions involved in the synthesis, utilization and/or degradation of pyrimidines. Cytosine, thymine and uracil - the nucleobases found in nucleic acids, are pyrimidine derivatives.
Synonyms:related_synonym: pyrimidine nucleobase metabolic process



show annotations for term's descendants           Sort by:
pyrimidine metabolic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
JBrowse link
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Cant1 calcium activated nucleotidase 1 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr10:103,637,079...103,650,240
Ensembl chr10:103,531,504...103,650,109
JBrowse link
G Cda cytidine deaminase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 IEA KEGG rno:00240 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Ctps1 CTP synthase 1 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180
JBrowse link
G Ctps2 CTP synthase 2 IEA KEGG rno:00240 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733
JBrowse link
G Dck deoxycytidine kinase IEA KEGG rno:00240 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247
JBrowse link
G Dctd dCMP deaminase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dhfr dihydrofolate reductase IDA RGD PMID:11502523 RGD:1298877 NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:7626590 SMP:00046 rno:00240, RGD:1624989 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:7626590 SMP:00046 rno:00240, RGD:1624989 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Dtymk deoxythymidylate kinase IEA KEGG rno:00240 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
G Dut deoxyuridine triphosphatase IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:3032103 SMP:00046 rno:00240, RGD:2300191 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 IEA KEGG rno:00240 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 IEA KEGG rno:00240 NCBI chr 8:120,246,412...120,277,943
Ensembl chr 8:120,247,121...120,277,943
JBrowse link
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 IEA KEGG rno:00240 NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 IEA KEGG rno:00240 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
JBrowse link
G Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 IEA KEGG rno:00240 NCBI chr 3:139,575,659...139,598,163
Ensembl chr 3:139,575,686...139,598,154
JBrowse link
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 IEA KEGG rno:00240 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296
JBrowse link
G Gda guanine deaminase ISO SMPDB SMP:00046 NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416
JBrowse link
G Itpa inosine triphosphatase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 3:117,885,464...117,897,247
Ensembl chr 3:117,885,099...117,897,249
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA KEGG rno:00240 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IEA KEGG rno:00240 NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA KEGG rno:00240 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA KEGG rno:00240 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
JBrowse link
G Nme7 NME/NM23 family member 7 IEA KEGG rno:00240 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA IEA KEGG rno:00240 NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
JBrowse link
G Nt5c1b 5'-nucleotidase, cytosolic IB IEA KEGG rno:00240 NCBI chr 6:33,139,053...33,156,489
Ensembl chr 6:33,139,064...33,156,481
JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II ISO SMPDB SMP:00046 NCBI chr 1:245,770,993...245,896,925
Ensembl chr 1:245,772,277...245,897,913
JBrowse link
G Nt5c3a 5'-nucleotidase, cytosolic IIIA IEA KEGG rno:00240 NCBI chr 4:86,161,642...86,204,656
Ensembl chr 4:86,161,643...86,204,628
JBrowse link
G Nt5e 5' nucleotidase, ecto IEA KEGG rno:00240 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial IEA KEGG rno:00240 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150
JBrowse link
G Nudt2 nudix hydrolase 2 IEA KEGG rno:00240 NCBI chr 5:56,628,265...56,643,104
Ensembl chr 5:56,628,265...56,643,104
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 IEA KEGG rno:00240 NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit IEA KEGG rno:00240 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit IEA KEGG rno:00240 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit IEA KEGG rno:00240 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold2 DNA polymerase delta 2, accessory subunit IEA KEGG rno:00240 NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit IEA KEGG rno:00240 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit IEA KEGG rno:00240 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit IEA KEGG rno:00240 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Pole2 DNA polymerase epsilon 2, accessory subunit IEA KEGG rno:00240 NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IEA KEGG rno:00240 NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231
Ensembl chr 7:75,974,717...75,977,231
JBrowse link
G Pole4 DNA polymerase epsilon 4, accessory subunit IEA KEGG rno:00240 NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097
JBrowse link
G Polr1a RNA polymerase I subunit A IEA KEGG rno:00240 NCBI chr 4:103,950,051...104,014,022
Ensembl chr 4:103,950,051...104,014,020
JBrowse link
G Polr1b RNA polymerase I subunit B IEA KEGG rno:00240 NCBI chr 3:116,333,910...116,358,385
Ensembl chr 3:116,333,889...116,358,379
JBrowse link
G Polr1c RNA polymerase I and III subunit C IEA KEGG rno:00240 NCBI chr 9:14,735,740...14,739,852
Ensembl chr 9:14,735,714...14,739,852
JBrowse link
G Polr1e RNA polymerase I subunit E IEA KEGG rno:00240 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
JBrowse link
G Polr1h RNA polymerase I subunit H IEA KEGG rno:00240 NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854
JBrowse link
G Polr2a RNA polymerase II subunit A IEA KEGG rno:00240 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
JBrowse link
G Polr2b RNA polymerase II subunit B IEA KEGG rno:00240 NCBI chr14:30,797,228...30,834,916
Ensembl chr14:30,797,228...30,834,916
JBrowse link
G Polr2c RNA polymerase II subunit C IEA KEGG rno:00240 NCBI chr19:10,158,153...10,164,935
Ensembl chr19:10,157,823...10,164,945
JBrowse link
G Polr2d RNA polymerase II subunit D IEA KEGG rno:00240 NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
JBrowse link
G Polr2e RNA polymerase II, I and III subunit E IEA KEGG rno:00240 NCBI chr 7:9,666,695...9,670,638
Ensembl chr 7:9,666,716...9,670,643
JBrowse link
G Polr2f RNA polymerase II, I and III subunit F IEA KEGG rno:00240 NCBI chr 7:110,712,528...110,724,234
Ensembl chr 7:110,712,572...110,724,234
JBrowse link
G Polr2g RNA polymerase II subunit G IEA KEGG rno:00240 NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
JBrowse link
G Polr2h RNA polymerase II, I and III subunit H IEA KEGG rno:00240 NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515
Ensembl chr10:80,192,032...80,197,515
JBrowse link
G Polr2i RNA polymerase II subunit I IEA KEGG rno:00240 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
JBrowse link
G Polr2j RNA polymerase II subunit J IEA KEGG rno:00240 NCBI chr12:20,543,038...20,548,590
Ensembl chr12:20,543,038...20,548,594
JBrowse link
G Polr2l RNA polymerase II, I and III subunit L IEA KEGG rno:00240 NCBI chr 1:196,570,051...196,572,060 JBrowse link
G Polr3a RNA polymerase III subunit A IEA KEGG rno:00240 NCBI chr16:49,178...88,178
Ensembl chr16:49,521...88,172
JBrowse link
G Polr3b RNA polymerase III subunit B IEA KEGG rno:00240 NCBI chr 7:19,039,179...19,142,450
Ensembl chr 7:19,038,552...19,142,598
JBrowse link
G Polr3c RNA polymerase III subunit C IEA KEGG rno:00240 NCBI chr 2:184,246,201...184,262,150
Ensembl chr 2:184,246,204...184,262,208
JBrowse link
G Polr3d RNA polymerase III subunit D IEA KEGG rno:00240 NCBI chr15:45,511,587...45,516,256
Ensembl chr15:45,511,589...45,516,353
JBrowse link
G Polr3e RNA polymerase III subunit E IEA KEGG rno:00240 NCBI chr 1:175,466,091...175,494,679
Ensembl chr 1:175,466,127...175,494,667
JBrowse link
G Polr3f RNA polymerase III subunit F IEA KEGG rno:00240 NCBI chr 3:131,908,466...131,924,838
Ensembl chr 3:131,908,466...131,924,837
JBrowse link
G Polr3g RNA polymerase III subunit G IEA KEGG rno:00240 NCBI chr 2:11,945,215...11,986,125
Ensembl chr 2:11,945,217...11,986,125
JBrowse link
G Polr3gl RNA polymerase III subunit GL IEA KEGG rno:00240 NCBI chr 2:184,111,570...184,129,200
Ensembl chr 2:184,112,510...184,129,114
JBrowse link
G Polr3h RNA polymerase III subunit H IEA KEGG rno:00240 NCBI chr 7:113,429,434...113,439,743
Ensembl chr 7:113,429,451...113,439,778
JBrowse link
G Polr3k RNA polymerase III subunit K IEA KEGG rno:00240 NCBI chr 3:168,982,846...168,987,043
Ensembl chr 3:168,982,812...168,987,040
JBrowse link
G Prim1 DNA primase subunit 1 IEA KEGG rno:00240 NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
JBrowse link
G Prim2 DNA primase subunit 2 IEA KEGG rno:00240 NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEA KEGG rno:00240 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773
JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633
JBrowse link
G Tk1 thymidine kinase 1 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
JBrowse link
G Tk2 thymidine kinase 2 IEA KEGG rno:00240 NCBI chr19:708,859...731,786
Ensembl chr19:708,891...730,924
JBrowse link
G Txnrd1 thioredoxin reductase 1 IEA KEGG rno:00240 NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863
JBrowse link
G Txnrd2 thioredoxin reductase 2 IEA KEGG rno:00240 NCBI chr11:82,519,996...82,568,156
Ensembl chr11:82,519,999...82,568,156
JBrowse link
G Txnrd3 thioredoxin reductase 3 IEA KEGG rno:00240 NCBI chr 4:122,072,548...122,112,493
Ensembl chr 4:122,072,548...122,112,491
JBrowse link
G Tymp thymidine phosphorylase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874
JBrowse link
G Tyms thymidylate synthetase IEA
IDA
ISO
KEGG
SMPDB
RGD
PMID:9894005 SMP:00046 rno:00240, RGD:1545055 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
G Uck1 uridine-cytidine kinase 1 IEA KEGG rno:00240 NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465
JBrowse link
G Uck2 uridine-cytidine kinase 2 IEA KEGG rno:00240 NCBI chr13:79,380,807...79,438,121
Ensembl chr13:79,383,846...79,438,352
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091
JBrowse link
G Umps uridine monophosphate synthetase IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
JBrowse link
G Upb1 beta-ureidopropionase 1 IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:7626590 SMP:00046 rno:00240, RGD:1624989 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upp1 uridine phosphorylase 1 IEA KEGG rno:00240 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
G Upp2 uridine phosphorylase 2 IEA
ISO
KEGG
SMPDB
SMP:00046 rno:00240 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
JBrowse link
G Uprt uracil phosphoribosyltransferase homolog IEA KEGG rno:00240 NCBI chr  X:69,516,573...69,546,811
Ensembl chr  X:69,516,738...69,546,797
JBrowse link
de novo pyrimidine biosynthetic pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase ISO RGD PMID:15096496 RGD:5133412 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:12678497 RGD:5133414 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 IDA RGD PMID:192455 RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Ctps1 CTP synthase 1 ISO RGD PMID:12678497 RGD:5133414 NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180
JBrowse link
G Ctps2 CTP synthase 2 ISO RGD PMID:20739275 RGD:5133419 NCBI chr  X:31,645,873...31,786,733
Ensembl chr  X:31,645,873...31,786,733
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) ISO RGD PMID:15096496 RGD:5133412 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 ISO RGD PMID:11768308 RGD:5134680 NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 ISO RGD PMID:11768308 RGD:5134680 NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 ISO RGD PMID:11768308 RGD:5134680 NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 ISO RGD PMID:11768308 RGD:5134680 NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 ISO RGD PMID:11768308 RGD:5134680 NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
JBrowse link
G Umps uridine monophosphate synthetase ISO RGD PMID:15096496 RGD:5133412 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1854
      nucleotide metabolic pathway 185
        pyrimidine metabolic pathway 94
          pyrimidine biosynthetic pathway + 12
          pyrimidine degradation pathway 0
paths to the root