PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: pyrimidine metabolic pathway
Accession: PW:0000032
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Definition: Those metabolic reactions involved in the synthesis, utilization and/or degradation of pyrimidines. Cytosine, thymine and uracil - the nucleobases found in nucleic acids, are pyrimidine derivatives.
Synonyms: related_synonym: pyrimidine nucleobase metabolic process
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Ak3
adenylate kinase 3
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
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Cant1
calcium activated nucleotidase 1
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr10:103,637,079...103,650,240
Ensembl chr10:103,531,504...103,650,109
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Cda
cytidine deaminase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231
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Cmpk1
cytidine/uridine monophosphate kinase 1
IEA
KEGG
rno:00240
NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
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Cmpk2
cytidine/uridine monophosphate kinase 2
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
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Ctps1
CTP synthase 1
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180
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Ctps2
CTP synthase 2
IEA
KEGG
rno:00240
NCBI chr X:31,645,873...31,786,733
Ensembl chr X:31,645,873...31,786,733
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Dck
deoxycytidine kinase
IEA
KEGG
rno:00240
NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247
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Dctd
dCMP deaminase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
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Dhfr
dihydrofolate reductase
IDA
RGD
PMID:11502523
RGD:1298877
NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713
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Dhodh
dihydroorotate dehydrogenase (quinone)
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
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Dpyd
dihydropyrimidine dehydrogenase
IEA ISO IDA
KEGG SMPDB RGD
PMID:7626590
SMP:00046 rno:00240, RGD:1624989
NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
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Dpys
dihydropyrimidinase
IEA ISO IDA
KEGG SMPDB RGD
PMID:7626590
SMP:00046 rno:00240, RGD:1624989
NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
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Dtymk
deoxythymidylate kinase
IEA
KEGG
rno:00240
NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
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Dut
deoxyuridine triphosphatase
IEA ISO IDA
KEGG SMPDB RGD
PMID:3032103
SMP:00046 rno:00240, RGD:2300191
NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
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Entpd1
ectonucleoside triphosphate diphosphohydrolase 1
IEA
KEGG
rno:00240
NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
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Entpd3
ectonucleoside triphosphate diphosphohydrolase 3
IEA
KEGG
rno:00240
NCBI chr 8:120,246,412...120,277,943
Ensembl chr 8:120,247,121...120,277,943
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Entpd4
ectonucleoside triphosphate diphosphohydrolase 4
IEA
KEGG
rno:00240
NCBI chr15:44,630,878...44,658,654
Ensembl chr15:44,630,873...44,658,706
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Entpd5
ectonucleoside triphosphate diphosphohydrolase 5
IEA
KEGG
rno:00240
NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
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Entpd6
ectonucleoside triphosphate diphosphohydrolase 6
IEA
KEGG
rno:00240
NCBI chr 3:139,575,659...139,598,163
Ensembl chr 3:139,575,686...139,598,154
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Entpd8
ectonucleoside triphosphate diphosphohydrolase 8
IEA
KEGG
rno:00240
NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296
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Gda
guanine deaminase
ISO
SMPDB
SMP:00046
NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416
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Itpa
inosine triphosphatase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 3:117,885,464...117,897,247
Ensembl chr 3:117,885,099...117,897,249
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Nme1
NME/NM23 nucleoside diphosphate kinase 1
IEA
KEGG
rno:00240
NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
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Nme2
NME/NM23 nucleoside diphosphate kinase 2
IEA
KEGG
rno:00240
NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538
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Nme3
NME/NM23 nucleoside diphosphate kinase 3
IEA
KEGG
rno:00240
NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
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Nme4
NME/NM23 nucleoside diphosphate kinase 4
IEA
KEGG
rno:00240
NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
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Nme6
NME/NM23 nucleoside diphosphate kinase 6
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
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Nme7
NME/NM23 family member 7
IEA
KEGG
rno:00240
NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
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Nt5c1a
5'-nucleotidase, cytosolic IA
IEA
KEGG
rno:00240
NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
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Nt5c1b
5'-nucleotidase, cytosolic IB
IEA
KEGG
rno:00240
NCBI chr 6:33,139,053...33,156,489
Ensembl chr 6:33,139,064...33,156,481
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Nt5c2
5'-nucleotidase, cytosolic II
ISO
SMPDB
SMP:00046
NCBI chr 1:245,770,993...245,896,925
Ensembl chr 1:245,772,277...245,897,913
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Nt5c3a
5'-nucleotidase, cytosolic IIIA
IEA
KEGG
rno:00240
NCBI chr 4:86,161,642...86,204,656
Ensembl chr 4:86,161,643...86,204,628
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Nt5e
5' nucleotidase, ecto
IEA
KEGG
rno:00240
NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
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Nt5m
5',3'-nucleotidase, mitochondrial
IEA
KEGG
rno:00240
NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150
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Nudt2
nudix hydrolase 2
IEA
KEGG
rno:00240
NCBI chr 5:56,628,265...56,643,104
Ensembl chr 5:56,628,265...56,643,104
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Pnpt1
polyribonucleotide nucleotidyltransferase 1
IEA
KEGG
rno:00240
NCBI chr14:102,877,553...102,908,696
Ensembl chr14:102,877,553...102,908,696
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Pola1
DNA polymerase alpha 1, catalytic subunit
IEA
KEGG
rno:00240
NCBI chr X:58,034,617...58,348,612
Ensembl chr X:58,034,619...58,348,536
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Pola2
DNA polymerase alpha 2, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
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Pold1
DNA polymerase delta 1, catalytic subunit
IEA
KEGG
rno:00240
NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
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Pold2
DNA polymerase delta 2, accessory subunit
IEA
KEGG
rno:00240
NCBI chr14:80,748,971...80,755,188
Ensembl chr14:80,748,974...80,755,160
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Pold3
DNA polymerase delta 3, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
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Pold4
DNA polymerase delta 4, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
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Pole
DNA polymerase epsilon, catalytic subunit
IEA
KEGG
rno:00240
NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
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Pole2
DNA polymerase epsilon 2, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 6:87,674,702...87,712,723
Ensembl chr 6:87,674,702...87,699,305
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Pole3
DNA polymerase epsilon 3, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 5:75,973,941...75,977,175
Ensembl chr 5:75,974,717...75,977,231 Ensembl chr 7:75,974,717...75,977,231
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Pole4
DNA polymerase epsilon 4, accessory subunit
IEA
KEGG
rno:00240
NCBI chr 4:115,165,285...115,171,097
Ensembl chr 4:115,165,285...115,171,097
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Polr1a
RNA polymerase I subunit A
IEA
KEGG
rno:00240
NCBI chr 4:103,950,051...104,014,022
Ensembl chr 4:103,950,051...104,014,020
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Polr1b
RNA polymerase I subunit B
IEA
KEGG
rno:00240
NCBI chr 3:116,333,910...116,358,385
Ensembl chr 3:116,333,889...116,358,379
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Polr1c
RNA polymerase I and III subunit C
IEA
KEGG
rno:00240
NCBI chr 9:14,735,740...14,739,852
Ensembl chr 9:14,735,714...14,739,852
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Polr1e
RNA polymerase I subunit E
IEA
KEGG
rno:00240
NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369
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Polr1h
RNA polymerase I subunit H
IEA
KEGG
rno:00240
NCBI chr20:1,594,936...1,598,854
Ensembl chr20:1,594,936...1,598,854
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Polr2a
RNA polymerase II subunit A
IEA
KEGG
rno:00240
NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455
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Polr2b
RNA polymerase II subunit B
IEA
KEGG
rno:00240
NCBI chr14:30,797,228...30,834,916
Ensembl chr14:30,797,228...30,834,916
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Polr2c
RNA polymerase II subunit C
IEA
KEGG
rno:00240
NCBI chr19:10,158,153...10,164,935
Ensembl chr19:10,157,823...10,164,945
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Polr2d
RNA polymerase II subunit D
IEA
KEGG
rno:00240
NCBI chr18:23,418,097...23,425,228
Ensembl chr18:23,418,097...23,425,228
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Polr2e
RNA polymerase II, I and III subunit E
IEA
KEGG
rno:00240
NCBI chr 7:9,666,695...9,670,638
Ensembl chr 7:9,666,716...9,670,643
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Polr2f
RNA polymerase II, I and III subunit F
IEA
KEGG
rno:00240
NCBI chr 7:110,712,528...110,724,234
Ensembl chr 7:110,712,572...110,724,234
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Polr2g
RNA polymerase II subunit G
IEA
KEGG
rno:00240
NCBI chr 1:205,689,160...205,692,537
Ensembl chr 1:205,689,160...205,692,686
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Polr2h
RNA polymerase II, I and III subunit H
IEA
KEGG
rno:00240
NCBI chr11:80,192,017...80,197,468
Ensembl chr11:80,192,032...80,197,515 Ensembl chr10:80,192,032...80,197,515
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Polr2i
RNA polymerase II subunit I
IEA
KEGG
rno:00240
NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952
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Polr2j
RNA polymerase II subunit J
IEA
KEGG
rno:00240
NCBI chr12:20,543,038...20,548,590
Ensembl chr12:20,543,038...20,548,594
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Polr2l
RNA polymerase II, I and III subunit L
IEA
KEGG
rno:00240
NCBI chr 1:196,570,051...196,572,060
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Polr3a
RNA polymerase III subunit A
IEA
KEGG
rno:00240
NCBI chr16:49,178...88,178
Ensembl chr16:49,521...88,172
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Polr3b
RNA polymerase III subunit B
IEA
KEGG
rno:00240
NCBI chr 7:19,039,179...19,142,450
Ensembl chr 7:19,038,552...19,142,598
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Polr3c
RNA polymerase III subunit C
IEA
KEGG
rno:00240
NCBI chr 2:184,246,201...184,262,150
Ensembl chr 2:184,246,204...184,262,208
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Polr3d
RNA polymerase III subunit D
IEA
KEGG
rno:00240
NCBI chr15:45,511,587...45,516,256
Ensembl chr15:45,511,589...45,516,353
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Polr3e
RNA polymerase III subunit E
IEA
KEGG
rno:00240
NCBI chr 1:175,466,091...175,494,679
Ensembl chr 1:175,466,127...175,494,667
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Polr3f
RNA polymerase III subunit F
IEA
KEGG
rno:00240
NCBI chr 3:131,908,466...131,924,838
Ensembl chr 3:131,908,466...131,924,837
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Polr3g
RNA polymerase III subunit G
IEA
KEGG
rno:00240
NCBI chr 2:11,945,215...11,986,125
Ensembl chr 2:11,945,217...11,986,125
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Polr3gl
RNA polymerase III subunit GL
IEA
KEGG
rno:00240
NCBI chr 2:184,111,570...184,129,200
Ensembl chr 2:184,112,510...184,129,114
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Polr3h
RNA polymerase III subunit H
IEA
KEGG
rno:00240
NCBI chr 7:113,429,434...113,439,743
Ensembl chr 7:113,429,451...113,439,778
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Polr3k
RNA polymerase III subunit K
IEA
KEGG
rno:00240
NCBI chr 3:168,982,846...168,987,043
Ensembl chr 3:168,982,812...168,987,040
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Prim1
DNA primase subunit 1
IEA
KEGG
rno:00240
NCBI chr 7:446,342...462,526
Ensembl chr 7:431,805...462,526
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Prim2
DNA primase subunit 2
IEA
KEGG
rno:00240
NCBI chr 9:35,692,376...35,904,521
Ensembl chr 9:35,692,376...35,903,030
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Rrm1
ribonucleotide reductase catalytic subunit M1
IEA
KEGG
rno:00240
NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
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Rrm2
ribonucleotide reductase regulatory subunit M2
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773
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Rrm2b
ribonucleotide reductase regulatory TP53 inducible subunit M2B
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 7:69,077,024...69,108,742
Ensembl chr 7:69,078,291...69,108,633
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Tk1
thymidine kinase 1
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
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Tk2
thymidine kinase 2
IEA
KEGG
rno:00240
NCBI chr19:708,859...731,786
Ensembl chr19:708,891...730,924
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Txnrd1
thioredoxin reductase 1
IEA
KEGG
rno:00240
NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863
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Txnrd2
thioredoxin reductase 2
IEA
KEGG
rno:00240
NCBI chr11:82,519,996...82,568,156
Ensembl chr11:82,519,999...82,568,156
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Txnrd3
thioredoxin reductase 3
IEA
KEGG
rno:00240
NCBI chr 4:122,072,548...122,112,493
Ensembl chr 4:122,072,548...122,112,491
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Tymp
thymidine phosphorylase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874 Ensembl chr 7:120,438,770...120,443,874
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Tyms
thymidylate synthetase
IEA IDA ISO
KEGG SMPDB RGD
PMID:9894005
SMP:00046 rno:00240, RGD:1545055
NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
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Uck1
uridine-cytidine kinase 1
IEA
KEGG
rno:00240
NCBI chr 3:15,538,580...15,544,465
Ensembl chr 3:15,538,591...15,544,465
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Uck2
uridine-cytidine kinase 2
IEA
KEGG
rno:00240
NCBI chr13:79,380,807...79,438,121
Ensembl chr13:79,383,846...79,438,352
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Uckl1
uridine-cytidine kinase 1-like 1
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 3:168,674,849...168,687,513
Ensembl chr 3:168,674,849...168,698,091
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Umps
uridine monophosphate synthetase
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
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Upb1
beta-ureidopropionase 1
IEA ISO IDA
KEGG SMPDB RGD
PMID:7626590
SMP:00046 rno:00240, RGD:1624989
NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
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Upp1
uridine phosphorylase 1
IEA
KEGG
rno:00240
NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
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Upp2
uridine phosphorylase 2
IEA ISO
KEGG SMPDB
SMP:00046 rno:00240
NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
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Uprt
uracil phosphoribosyltransferase homolog
IEA
KEGG
rno:00240
NCBI chr X:69,516,573...69,546,811
Ensembl chr X:69,516,738...69,546,797
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
ISO
RGD
PMID:15096496
RGD:5133412
NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
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Cmpk1
cytidine/uridine monophosphate kinase 1
ISO
RGD
PMID:12678497
RGD:5133414
NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
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Cmpk2
cytidine/uridine monophosphate kinase 2
IDA
RGD
PMID:192455
RGD:5133256
NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
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Ctps1
CTP synthase 1
ISO
RGD
PMID:12678497
RGD:5133414
NCBI chr 5:134,125,022...134,154,155
Ensembl chr 5:134,125,025...134,154,180
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Ctps2
CTP synthase 2
ISO
RGD
PMID:20739275
RGD:5133419
NCBI chr X:31,645,873...31,786,733
Ensembl chr X:31,645,873...31,786,733
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Dhodh
dihydroorotate dehydrogenase (quinone)
ISO
RGD
PMID:15096496
RGD:5133412
NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
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Nme1
NME/NM23 nucleoside diphosphate kinase 1
ISO
RGD
PMID:11768308
RGD:5134680
NCBI chr10:78,907,036...78,929,659
Ensembl chr10:78,906,083...78,916,408
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Nme2
NME/NM23 nucleoside diphosphate kinase 2
ISO
RGD
PMID:11768308
RGD:5134680
NCBI chr10:78,898,097...78,903,514
Ensembl chr10:78,897,770...78,903,538
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Nme3
NME/NM23 nucleoside diphosphate kinase 3
ISO
RGD
PMID:11768308
RGD:5134680
NCBI chr10:13,917,309...13,918,415
Ensembl chr10:13,917,403...13,918,359
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Nme4
NME/NM23 nucleoside diphosphate kinase 4
ISO
RGD
PMID:11768308
RGD:5134680
NCBI chr10:15,114,624...15,118,479
Ensembl chr10:15,002,926...15,118,479
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Nme6
NME/NM23 nucleoside diphosphate kinase 6
ISO
RGD
PMID:11768308
RGD:5134680
NCBI chr 8:109,832,085...109,839,301
Ensembl chr 8:109,832,589...109,839,301
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Umps
uridine monophosphate synthetase
ISO
RGD
PMID:15096496
RGD:5133412
NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all