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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:citric acid cycle pathway
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Accession:PW:0000026 term browser browse the term
Definition:The series of chemical reactions that are central to all aerobic cells and constitute the citric acid cycle. Also known as the tricarboxylic acid cycle (TCA) or Krebs cycle, it is the center of convergence for all molecular fuels.
Synonyms:related_synonym: Citric acid cycle (TCA cycle);   Krebs cycle pathway;   TCA cycle pathway;   tricarboxylic acid cycle;   tricarboxylic acid cycle pathway

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citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acly ATP citrate lyase IEA KEGG rno:00020 NCBI chr10:85,412,045...85,464,253
Ensembl chr10:85,412,049...85,463,320
JBrowse link
G Aco1 aconitase 1 IEA KEGG rno:00020 NCBI chr 5:55,259,841...55,315,872
Ensembl chr 5:55,259,827...55,316,391
JBrowse link
G Aco2 aconitase 2 IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:9712727 SMP:00057 rno:00020, RGD:2306877 NCBI chr 7:113,385,677...113,428,794
Ensembl chr 7:113,385,646...113,428,261
JBrowse link
G Cs citrate synthase IEA
ISO
IDA
KEGG
SMPDB
RGD
PMID:9712727 SMP:00057 rno:00020, RGD:2306877 NCBI chr 7:758,074...791,421
Ensembl chr 7:758,345...791,421
JBrowse link
G Dlat dihydrolipoamide S-acetyltransferase IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 8:50,979,151...51,004,435
Ensembl chr 8:50,978,051...51,004,479
JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO
IEA
SMPDB
KEGG
RGD
PMID:10672230 SMP:00057 rno:00020, RGD:2306878 NCBI chr 6:47,904,153...47,924,814
Ensembl chr 6:47,903,914...47,924,795
JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase ISO
IEA
SMPDB
KEGG
RGD
PMID:10672230 SMP:00057 rno:00020, RGD:2306878 NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296
JBrowse link
G Fh fumarate hydratase ISO SMPDB SMP:00057 NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
JBrowse link
G Idh1 isocitrate dehydrogenase (NADP(+)) 1 IEA KEGG rno:00020 NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708
JBrowse link
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 IEA KEGG rno:00020 NCBI chr 1:134,038,644...134,057,969
Ensembl chr 1:134,029,772...134,058,025
JBrowse link
G Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 8:54,971,694...54,991,085
Ensembl chr 8:54,971,740...54,991,084
JBrowse link
G Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 3:117,481,845...117,486,909
Ensembl chr 3:117,481,845...117,486,982
JBrowse link
G Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr  X:151,515,244...151,524,175
Ensembl chr  X:151,515,247...151,524,171
JBrowse link
G Mdh1 malate dehydrogenase 1 IEA KEGG rno:00020 NCBI chr14:95,630,625...95,645,920
Ensembl chr14:95,630,306...95,645,925
JBrowse link
G Mdh2 malate dehydrogenase 2 IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr12:20,894,269...20,907,225
Ensembl chr12:20,894,262...20,907,271
JBrowse link
G Mpc1 mitochondrial pyruvate carrier 1 ISO SMPDB SMP:00057 NCBI chr 1:52,437,745...52,449,399
Ensembl chr 1:52,437,741...52,449,400
JBrowse link
G Ogdh oxoglutarate dehydrogenase IDA
ISO
IEA
SMPDB
KEGG
RGD
PMID:9712727 PMID:10672230 SMP:00057 rno:00020, RGD:2306877, RGD:2306878 NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
JBrowse link
G Ogdhl oxoglutarate dehydrogenase L IEA KEGG rno:00020 NCBI chr16:7,578,343...7,604,385
Ensembl chr16:7,578,367...7,604,386
JBrowse link
G Pc pyruvate carboxylase IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380
JBrowse link
G Pck1 phosphoenolpyruvate carboxykinase 1 IEA KEGG rno:00020 NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IEA KEGG rno:00020 NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283
JBrowse link
G Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr  X:34,700,481...34,714,309
Ensembl chr  X:34,700,409...34,714,311
JBrowse link
G Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 IEA KEGG rno:00020 NCBI chr 2:229,872,300...229,873,848 JBrowse link
G Pdhb pyruvate dehydrogenase E1 subunit beta IEA
ISO
KEGG
SMPDB
SMP:00057 rno:00020 NCBI chr15:16,752,561...16,758,503
Ensembl chr15:16,750,980...16,758,500
JBrowse link
G Sdha succinate dehydrogenase complex flavoprotein subunit A ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 1:28,935,965...28,960,936
Ensembl chr 1:28,940,164...28,961,535
JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293
JBrowse link
G Sdhc succinate dehydrogenase complex subunit C ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr13:83,544,652...83,565,560
Ensembl chr13:83,544,652...83,566,253
JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO
IEA
SMPDB
KEGG
RGD
PMID:16143825 SMP:00057 rno:00020, RGD:2306881 NCBI chr 8:50,944,702...50,954,298
Ensembl chr 8:50,944,704...50,954,238
JBrowse link
G Sucla2 succinate-CoA ligase ADP-forming subunit beta IDA
IEA
KEGG
RGD
PMID:17403370 rno:00020, RGD:2306915 NCBI chr15:48,752,356...48,805,495
Ensembl chr15:48,752,312...48,805,138
JBrowse link
G Suclg1 succinate-CoA ligase GDP/ADP-forming subunit alpha IDA
ISO
IEA
SMPDB
KEGG
RGD
PMID:17403370 SMP:00057 rno:00020, RGD:2306915 NCBI chr 4:105,308,236...105,337,595
Ensembl chr 4:105,308,039...105,337,600
JBrowse link
G Suclg2 succinate-CoA ligase GDP-forming subunit beta IDA
ISO
IEA
SMPDB
KEGG
RGD
PMID:17403370 SMP:00057 rno:00020, RGD:2306915 NCBI chr 4:128,067,031...128,337,146
Ensembl chr 4:128,067,033...128,337,170
JBrowse link
altered citric acid cycle pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fh fumarate hydratase ISO RGD PMID:17211469 RGD:6907135 NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
JBrowse link
G Sdhb succinate dehydrogenase complex iron sulfur subunit B ISO RGD PMID:21771581 RGD:6907134 NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293
JBrowse link
G Sdhd succinate dehydrogenase complex subunit D ISO RGD PMID:21771581 RGD:6907134 NCBI chr 8:50,944,702...50,954,298
Ensembl chr 8:50,944,704...50,954,238
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6092
    classic metabolic pathway 1854
      energy metabolic pathway 166
        citric acid cycle pathway 31
          altered citric acid cycle pathway 3
Path 2
Term Annotations click to browse term
  pathway 6092
    regulatory pathway 3871
      homeostasis pathway 1773
        energy homeostasis pathway 431
          citric acid cycle pathway 31
            altered citric acid cycle pathway 3
paths to the root