PATHWAY ONTOLOGY - ANNOTATIONS
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml ).
Term: citric acid cycle pathway
Accession: PW:0000026
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Definition: The series of chemical reactions that are central to all aerobic cells and constitute the citric acid cycle. Also known as the tricarboxylic acid cycle (TCA) or Krebs cycle, it is the center of convergence for all molecular fuels.
Synonyms: related_synonym: Citric acid cycle (TCA cycle); Krebs cycle pathway; TCA cycle pathway; tricarboxylic acid cycle; tricarboxylic acid cycle pathway
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Acly
ATP citrate lyase
IEA
KEGG
rno:00020
NCBI chr10:85,412,045...85,464,253
Ensembl chr10:85,412,049...85,463,320
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Aco1
aconitase 1
IEA
KEGG
rno:00020
NCBI chr 5:55,259,841...55,315,872
Ensembl chr 5:55,259,827...55,316,391
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Aco2
aconitase 2
IEA ISO IDA
KEGG SMPDB RGD
PMID:9712727
SMP:00057 rno:00020, RGD:2306877
NCBI chr 7:113,385,677...113,428,794
Ensembl chr 7:113,385,646...113,428,261
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Cs
citrate synthase
IEA ISO IDA
KEGG SMPDB RGD
PMID:9712727
SMP:00057 rno:00020, RGD:2306877
NCBI chr 7:758,074...791,421
Ensembl chr 7:758,345...791,421
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Dlat
dihydrolipoamide S-acetyltransferase
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr 8:50,979,151...51,004,435
Ensembl chr 8:50,978,051...51,004,479
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Dld
dihydrolipoamide dehydrogenase
ISO IEA
SMPDB KEGG RGD
PMID:10672230
SMP:00057 rno:00020, RGD:2306878
NCBI chr 6:47,904,153...47,924,814
Ensembl chr 6:47,903,914...47,924,795
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Dlst
dihydrolipoamide S-succinyltransferase
ISO IEA
SMPDB KEGG RGD
PMID:10672230
SMP:00057 rno:00020, RGD:2306878
NCBI chr 6:104,758,511...104,783,296
Ensembl chr 6:104,758,631...104,783,296
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Fh
fumarate hydratase
ISO
SMPDB
SMP:00057
NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
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Idh1
isocitrate dehydrogenase (NADP(+)) 1
IEA
KEGG
rno:00020
NCBI chr 9:66,534,146...66,563,703
Ensembl chr 9:66,534,146...66,563,708
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Idh2
isocitrate dehydrogenase (NADP(+)) 2
IEA
KEGG
rno:00020
NCBI chr 1:134,038,644...134,057,969
Ensembl chr 1:134,029,772...134,058,025
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Idh3a
isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr 8:54,971,694...54,991,085
Ensembl chr 8:54,971,740...54,991,084
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Idh3b
isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr 3:117,481,845...117,486,909
Ensembl chr 3:117,481,845...117,486,982
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Idh3g
isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr X:151,515,244...151,524,175
Ensembl chr X:151,515,247...151,524,171
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Mdh1
malate dehydrogenase 1
IEA
KEGG
rno:00020
NCBI chr14:95,630,625...95,645,920
Ensembl chr14:95,630,306...95,645,925
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Mdh2
malate dehydrogenase 2
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr12:20,894,269...20,907,225
Ensembl chr12:20,894,262...20,907,271
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Mpc1
mitochondrial pyruvate carrier 1
ISO
SMPDB
SMP:00057
NCBI chr 1:52,437,745...52,449,399
Ensembl chr 1:52,437,741...52,449,400
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Ogdh
oxoglutarate dehydrogenase
IDA ISO IEA
SMPDB KEGG RGD
PMID:9712727 PMID:10672230
SMP:00057 rno:00020, RGD:2306877 , RGD:2306878
NCBI chr14:81,150,021...81,217,479
Ensembl chr14:81,150,091...81,217,479
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Ogdhl
oxoglutarate dehydrogenase L
IEA
KEGG
rno:00020
NCBI chr16:7,578,343...7,604,385
Ensembl chr16:7,578,367...7,604,386
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Pc
pyruvate carboxylase
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr 1:201,799,374...201,898,412
Ensembl chr 1:201,804,267...201,898,380
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Pck1
phosphoenolpyruvate carboxykinase 1
IEA
KEGG
rno:00020
NCBI chr 3:161,930,256...161,936,205
Ensembl chr 3:161,930,256...161,936,191
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Pck2
phosphoenolpyruvate carboxykinase 2 (mitochondrial)
IEA
KEGG
rno:00020
NCBI chr15:29,027,891...29,036,729
Ensembl chr15:29,027,894...29,037,283
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Pdha1
pyruvate dehydrogenase E1 subunit alpha 1
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr X:34,700,481...34,714,309
Ensembl chr X:34,700,409...34,714,311
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Pdha2
pyruvate dehydrogenase E1 subunit alpha 2
IEA
KEGG
rno:00020
NCBI chr 2:229,872,300...229,873,848
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Pdhb
pyruvate dehydrogenase E1 subunit beta
IEA ISO
KEGG SMPDB
SMP:00057 rno:00020
NCBI chr15:16,752,561...16,758,503
Ensembl chr15:16,750,980...16,758,500
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Sdha
succinate dehydrogenase complex flavoprotein subunit A
ISO IEA
SMPDB KEGG RGD
PMID:16143825
SMP:00057 rno:00020, RGD:2306881
NCBI chr 1:28,935,965...28,960,936
Ensembl chr 1:28,940,164...28,961,535
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Sdhb
succinate dehydrogenase complex iron sulfur subunit B
ISO IEA
SMPDB KEGG RGD
PMID:16143825
SMP:00057 rno:00020, RGD:2306881
NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293
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Sdhc
succinate dehydrogenase complex subunit C
ISO IEA
SMPDB KEGG RGD
PMID:16143825
SMP:00057 rno:00020, RGD:2306881
NCBI chr13:83,544,652...83,565,560
Ensembl chr13:83,544,652...83,566,253
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Sdhd
succinate dehydrogenase complex subunit D
ISO IEA
SMPDB KEGG RGD
PMID:16143825
SMP:00057 rno:00020, RGD:2306881
NCBI chr 8:50,944,702...50,954,298
Ensembl chr 8:50,944,704...50,954,238
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Sucla2
succinate-CoA ligase ADP-forming subunit beta
IDA IEA
KEGG RGD
PMID:17403370
rno:00020, RGD:2306915
NCBI chr15:48,752,356...48,805,495
Ensembl chr15:48,752,312...48,805,138
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Suclg1
succinate-CoA ligase GDP/ADP-forming subunit alpha
IDA ISO IEA
SMPDB KEGG RGD
PMID:17403370
SMP:00057 rno:00020, RGD:2306915
NCBI chr 4:105,308,236...105,337,595
Ensembl chr 4:105,308,039...105,337,600
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Suclg2
succinate-CoA ligase GDP-forming subunit beta
IDA ISO IEA
SMPDB KEGG RGD
PMID:17403370
SMP:00057 rno:00020, RGD:2306915
NCBI chr 4:128,067,031...128,337,146
Ensembl chr 4:128,067,033...128,337,170
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Fh
fumarate hydratase
ISO
RGD
PMID:17211469
RGD:6907135
NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
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Sdhb
succinate dehydrogenase complex iron sulfur subunit B
ISO
RGD
PMID:21771581
RGD:6907134
NCBI chr 5:153,264,906...153,285,570
Ensembl chr 5:153,264,899...153,314,293
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Sdhd
succinate dehydrogenase complex subunit D
ISO
RGD
PMID:21771581
RGD:6907134
NCBI chr 8:50,944,702...50,954,298
Ensembl chr 8:50,944,704...50,954,238
Term paths to the root one shortest all shortest one longest all longest one shortest and longest all