ONTOLOGY REPORT - ANNOTATIONS

Term:abnormal brain morphology
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Accession:MP:0002152 term browser browse the term
Definition:any structural anomaly of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)
Synonyms:exact_synonym: abnormal brain;   abnormal brain structure;   brain abnormalities;   brain dysplasia;   brain structure abnormalities;   central nervous system: brain dysmorphology
 alt_id: MP:0000770;   MP:0000775
 xref: MGI:2173612

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abnormal brain morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Gata3 GATA binding protein 3 GBrowse link IEA 17 79,991,587 80,011,574 RGD:704404 RGD
abnormal brain development term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Dcx doublecortin GBrowse link IMP X 34,596,262 34,672,383 RGD:1304461 RGD
abnormal brain ventricle morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Adora1 adenosine A1 receptor GBrowse link IED 13 47,160,292 47,192,804 RGD:1625283 RGD
Q Bvd1 Brain ventricular dilatation QTL 1 GBrowse link QTM 9 73,454,285 110,864,247 RGD:1302890 RGD
Q Bvd2 Brain ventricular dilatation QTL 2 GBrowse link QTM 10 79,981,838 124,981,838 RGD:1302890 RGD
Q Bvd3 Brain ventricular dilatation QTL 3 GBrowse link QTM 11 77,341,660 84,841,212 RGD:1302890 RGD
Q Bvd4 Brain ventricular dilatation QTL 4 GBrowse link QTM 17 62,026,925 93,930,006 RGD:1302890 RGD
Q Bvd5 Brain ventricular dilatation QTL 5 GBrowse link QTM 17 38,353,858 92,741,218 RGD:1302890 RGD
abnormal brain white matter morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Adora1 adenosine A1 receptor GBrowse link IED 13 47,160,292 47,192,804 RGD:1625283 RGD
abnormal cerebellum vermis morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S F344.CVD-Unc5ccvd/Kyo GBrowse link TAS 2 239,365,109 239,721,231 RGD:1302502 RGD
abnormal cerebral cortex morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Fgf2 fibroblast growth factor 2 GBrowse link IEA 2 123,893,314 123,947,136 RGD:704404 RGD
abnormal choroid plexus morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S F344.ACI-Lmx1aqc/Kyo GBrowse link IED 13 79,886,614 87,116,372 RGD:1549451 RGD
abnormal corpus callosum morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S F344.ACI-Lmx1aqc/Kyo GBrowse link IED 13 79,886,614 87,116,372 RGD:1549451 RGD
abnormal hippocampus development term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Grin2a glutamate receptor, ionotropic, N-methyl D-aspartate 2A GBrowse link IEA 10 5,588,229 6,004,780 RGD:704404 RGD
abnormal Purkinje cell morphology term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S GRY/Idr groggy rat TAS RGD:1598976 RGD
brain vacuoles term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S TRM/Kyo tremor rat TAS RGD:628404 RGD
S TRMR/Kyo tremor resistant TAS RGD:628404 RGD
S WTC.ZI-Atrnzi/Kyo IED RGD:2303790 RGD
S ZI/Kyo TAS RGD:67998 RGD
cerebellum hypoplasia term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S F344.ACI-Lmx1aqc/Kyo GBrowse link IED 13 79,886,614 87,116,372 RGD:1549451 RGD
decreased Purkinje cell number term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Grid2 glutamate receptor, ionotropic, delta 2 GBrowse link IEA 4 92,642,427 94,054,757 RGD:704404 RGD
dilated lateral ventricles term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S HTX/Kyo hydrocephalus texas TAS RGD:1302443 RGD
hydroencephaly term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
G Gfap glial fibrillary acidic protein GBrowse link IEA 10 92,059,881 92,068,555 RGD:704404 RGD
Q Bvd1 Brain ventricular dilatation QTL 1 GBrowse link QTM 9 73,454,285 110,864,247 RGD:1302890 RGD
Q Bvd2 Brain ventricular dilatation QTL 2 GBrowse link QTM 10 79,981,838 124,981,838 RGD:1302890 RGD
Q Bvd3 Brain ventricular dilatation QTL 3 GBrowse link QTM 11 77,341,660 84,841,212 RGD:1302890 RGD
Q Bvd4 Brain ventricular dilatation QTL 4 GBrowse link QTM 17 62,026,925 93,930,006 RGD:1302890 RGD
Q Bvd5 Brain ventricular dilatation QTL 5 GBrowse link QTM 17 38,353,858 92,741,218 RGD:1302890 RGD
Q Bvd6 Brain ventricular dilatation QTL 6 GBrowse link IED 11 67,930,910 87,759,784 RGD:68693 RGD
S HTX/Hcj TAS RGD:1559414 RGD
S HTX/HcjRrrc TAS RGD:1559414 RGD
S LEW/Jms TAS RGD:1559416 RGD
S LEW/JmsNgs congenital hydrocephalus rat TAS RGD:1302502 RGD
neurofibrillary tangles term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S SD-Tg(UbC-APPswe)6590 IED RGD:2290385 RGD
S SHR-Tg(Thy1-MAPT)318 IED RGD:2290296 RGD
S SHR-Tg(Thy1-MAPT)72 IED RGD:2290296 RGD
pituitary gland hyperplasia term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
Q Edpm1 Estrogen-dependent pituitary mass QTL 1 GBrowse link QTM 2 42,866,226 87,866,226 RGD:61074 RGD
Q Edpm10 Estrogen-dependent pituitary mass QTL 10 QTM RGD:61074 RGD
Q Edpm11 Estrogen-dependent pituitary mass QTL 11 GBrowse link QTM 9 1 39,963,583 RGD:629550 RGD
Q Edpm12 Estrogen-dependent pituitary mass QTL 12 GBrowse link QTM X 23,620,000 68,620,000 RGD:629550 RGD
Q Edpm2 Estrogen-dependent pituitary mass QTL 2 GBrowse link QTM 2 77,630,629 210,636,169 RGD:61074 RGD
Q Edpm3 Estrogen-dependent pituitary mass QTL 3 GBrowse link QTM 3 50,522,717 88,648,420 RGD:61074 RGD
Q Edpm5 Estrogen-dependent pituitary mass QTL 5 GBrowse link QTM 5 71,814,715 109,163,425 RGD:61074 RGD
Q Edpm9 Estrogen-dependent pituitary mass QTL 9 QTM RGD:61074 RGD
Q Ept1 Estrogen-induced pituitary tumorigenesis QTL 1 GBrowse link IAGP 6 1 8,184,962 RGD:1334449 RGD
Q Ept10 Estrogen-induced pituitary tumorigenesis QTL 10 GBrowse link IAGP 1 197,770,157 250,119,666 RGD:1334449 RGD
Q Ept13 Estrogen-induced pituitary tumorigenesis QTL 13 GBrowse link IAGP 1 23,633,441 77,148,378 RGD:1334449 RGD
Q Ept15 Estrogen-induced pituitary tumorigenesis QTL 15 GBrowse link Induced IED 6 1 8,184,962 RGD:2292503 RGD
Q Ept16 Estrogen-induced pituitary tumorigenesis QTL 16 GBrowse link Induced IED 3 44,551,542 110,215,186 RGD:2292503 RGD
Q Ept17 Estrogen-induced pituitary tumorigenesis QTL 17 GBrowse link Induced IED 3 6,373,454 22,341,164 RGD:2292503 RGD
Q Ept18 Estrogen-induced pituitary tumorigenesis QTL 18 GBrowse link Induced IED 10 77,092,169 100,633,512 RGD:2292503 RGD
Q Ept2 Estrogen-induced pituitary tumorigenesis QTL 2 GBrowse link IAGP 3 44,551,542 110,215,186 RGD:1334449 RGD
Q Ept5 Estrogen-induced pituitary tumorigenesis QTL 5 GBrowse link IED 4 82,700,691 182,307,104 RGD:1642526 RGD
Q Ept6 Estrogen-induced pituitary tumorigenesis QTL 6 GBrowse link IAGP 3 6,373,454 22,341,164 RGD:1334449 RGD
Q Ept7 Estrogen-induced pituitary tumorigenesis QTL 7 GBrowse link IED 7 66,201,980 107,428,439 RGD:1642526 RGD
Q Ept9 Estrogen-induced pituitary tumorigenesis QTL 9 GBrowse link IAGP 10 77,092,169 100,633,512 RGD:1334449 RGD
S ACI/SegHsd Induced IED RGD:1642526 RGD
S F344/NHsd F344/NHsd QTM RGD:61074 RGD
pituitary gland hypoplasia term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S ACI.COP-(D10Mgh8-D10Rat4)/Shul GBrowse link Induced IED 10 53,781,126 107,033,716 RGD:2292503 RGD
S ACI.COP-(D3Rat130-D3Rat114)/Shul GBrowse link Induced IED 3 44,551,252 149,496,698 RGD:2292503 RGD
S ACI.COP-(D6Rat80-D6Rat146)/Shul GBrowse link Induced IED 6 16,302,145 16,302,283 RGD:2292503 RGD
small cerebellum term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S GRY/Idr groggy rat TAS RGD:1598976 RGD
tau protein deposits term browser
Symbol Object Name GBrowse Qualifiers Evidence Chr Start Stop Reference Source
S SHR-Tg(Thy1-MAPT)318 IED RGD:2290296 RGD
S SHR-Tg(Thy1-MAPT)72 IED RGD:2290296 RGD
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  mammalian phenotype 6280
    nervous system phenotype 218
      abnormal nervous system morphology 95
        abnormal brain morphology 64
          abnormal brain copper level + 0
          abnormal brain development + 13
          abnormal brain interneuron morphology 0
          abnormal brain iron level 0
          abnormal brain size + 0
          abnormal brain vasculature morphology + 0
          abnormal brain ventricle/choroid plexus morphology + 19
          abnormal brain white matter morphology + 2
          abnormal brainstem morphology + 0
          abnormal forebrain morphology + 29
          abnormal hindbrain morphology + 5
          abnormal midbrain morphology + 0
          abnormal postnatal subventricular zone morphology + 0
          brain vacuoles 4
          cerebral amyloid angiopathy 0
          neurofibrillary tangles 3
          tau protein deposits 2
paths to the root

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