abnormal brain morphology - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS

Term:	abnormal brain morphology	go back to main search page
Accession:	MP:0002152	browse the term
Definition:	any structural anomaly of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)
Synonyms:	exact_synonym:	abnormal brain; abnormal brain structure; brain abnormalities; brain dysplasia; brain structure abnormalities; central nervous system: brain dysmorphology
	alt_id:	MP:0000770; MP:0000775
	xref:	MGI:2173612

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abnormal brain morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abl1	c-abl oncogene 1, non-receptor tyrosine kinase		IAGP	2	31,544,076	31,659,747	RGD:5509061	MGI
G	Abl2	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)		IAGP	1	158,488,918	158,579,750	RGD:5509061	MGI
G	Akt1	thymoma viral proto-oncogene 1		IAGP	12	113,892,032	113,912,487	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Apoe	apolipoprotein E		IAGP	7	20,281,593	20,284,515	RGD:5509061	MGI
G	Apoe	apolipoprotein E		IAGP	7	20,281,593	20,284,515	RGD:5509061	MGI
G	Atg5	autophagy related 5		IAGP	10	43,988,164	44,084,097	RGD:5509061	MGI
G	Atp7b	ATPase, Cu++ transporting, beta polypeptide		IEA	8	23,104,820	23,170,546	RGD:5509061	MGI
G	Atr	ataxia telangiectasia and Rad3 related		IAGP	9	95,758,016	95,852,063	RGD:5509061	MGI
G	Atrn	attractin		IAGP	2	130,732,232	130,856,065	RGD:5509061	MGI
G	Atrn	attractin		IAGP	2	130,732,232	130,856,065	RGD:5509061	MGI
G	Bak1	BCL2-antagonist/killer 1		IAGP	17	27,156,757	27,165,571	RGD:5509061	MGI
G	Bax	BCL2-associated X protein		IAGP	7	52,717,065	52,722,268	RGD:5509061	MGI
G	Bmi1	Bmi1 polycomb ring finger oncogene		IAGP	2	18,598,645	18,608,256	RGD:5509061	MGI
G	Cacna1a	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit		IAGP	8	86,939,263	87,164,148	RGD:5509061	MGI
G	Cadm1	cell adhesion molecule 1		IAGP	9	47,338,435	47,661,468	RGD:5509061	MGI
G	Cadps2	Ca2+-dependent activator protein for secretion 2		IAGP	6	23,212,838	23,789,300	RGD:5509061	MGI
G	Casp3	caspase 3		IAGP	8	47,702,803	47,724,071	RGD:5509061	MGI
G	Casp9	caspase 9		IAGP	4	141,349,527	141,371,890	RGD:5509061	MGI
G	Cd247	CD247 antigen		IAGP	1	167,718,820	167,804,117	RGD:5509061	MGI
G	Celsr3	cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)		IAGP	9	108,728,651	108,755,300	RGD:5509061	MGI
G	Chrna4	cholinergic receptor, nicotinic, alpha polypeptide 4		IAGP	2	180,757,016	180,773,882	RGD:5509061	MGI
G	Chrna6	cholinergic receptor, nicotinic, alpha polypeptide 6		IAGP	8	28,513,684	28,524,416	RGD:5509061	MGI
G	Chrna7	cholinergic receptor, nicotinic, alpha polypeptide 7		IAGP	7	70,243,578	70,357,412	RGD:5509061	MGI
G	Chrna7	cholinergic receptor, nicotinic, alpha polypeptide 7		IAGP	7	70,243,578	70,357,412	RGD:5509061	MGI
G	Chrnb2	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)		IAGP	3	89,557,370	89,568,554	RGD:5509061	MGI
G	Chrnb2	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)		IAGP	3	89,557,370	89,568,554	RGD:5509061	MGI
G	Clcn2	chloride channel 2		IAGP	16	20,703,039	20,716,709	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Cln5	ceroid-lipofuscinosis, neuronal 5		IAGP	14	103,469,433	103,476,847	RGD:5509061	MGI
G	Col18a1	collagen, type XVIII, alpha 1		IAGP	10	76,514,924	76,629,275	RGD:5509061	MGI
G	Col4a1	collagen, type IV, alpha 1		IAGP	8	11,198,423	11,312,826	RGD:5509061	MGI
G	Col4a1	collagen, type IV, alpha 1		IAGP	8	11,198,423	11,312,826	RGD:5509061	MGI
G	Col4a2	collagen, type IV, alpha 2		IAGP	8	11,312,829	11,449,287	RGD:5509061	MGI
G	Ctnna1	catenin (cadherin associated protein), alpha 1		IAGP	18	35,278,566	35,414,429	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dag1	dystroglycan 1		IAGP	9	108,108,289	108,166,067	RGD:5509061	MGI
G	Dbp	D site albumin promoter binding protein		IAGP	7	52,960,617	52,965,573	RGD:5509061	MGI
G	Dcc	deleted in colorectal carcinoma		IAGP	18	71,413,286	72,510,723	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Diap2	diaphanous homolog 2 (Drosophila)		IEA	X	126,284,278	126,995,733	RGD:5509061	MGI
G	Dlg5	discs, large homolog 5 (Drosophila)		IAGP	14	24,953,175	25,065,142	RGD:5509061	MGI
G	Dnm1l	dynamin 1-like		IAGP	16	16,312,326	16,359,123	RGD:5509061	MGI
G	Dync2h1	dynein cytoplasmic 2 heavy chain 1		IAGP	9	6,928,503	7,177,046	RGD:5509061	MGI
G	E2f5	E2F transcription factor 5		IAGP	3	14,578,671	14,606,309	RGD:5509061	MGI
G	Edaradd	EDAR (ectodysplasin-A receptor)-associated death domain		IAGP	13	12,569,175	12,612,715	RGD:5509061	MGI
G	Ednrb	endothelin receptor type B		IAGP	14	104,213,842	104,243,390	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	En1	engrailed 1		IAGP	1	122,499,064	122,504,568	RGD:5509061	MGI
G	En1	engrailed 1		IAGP	1	122,499,064	122,504,568	RGD:5509061	MGI
G	En1	engrailed 1		IAGP	1	122,499,064	122,504,568	RGD:5509061	MGI
G	En1	engrailed 1		IAGP	1	122,499,064	122,504,568	RGD:5509061	MGI
G	En1	engrailed 1		IAGP	1	122,499,064	122,504,568	RGD:5509061	MGI
G	Epha7	Eph receptor A7		IAGP	4	28,740,295	28,894,649	RGD:5509061	MGI
G	Erbb3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)		IAGP	10	128,006,424	128,026,557	RGD:5509061	MGI
G	Fgfr1	fibroblast growth factor receptor 1		IAGP	8	26,629,244	26,686,186	RGD:5509061	MGI
G	Fgfr2	fibroblast growth factor receptor 2		IAGP	7	137,305,965	137,410,322	RGD:5509061	MGI
G	Fgfr2	fibroblast growth factor receptor 2		IAGP	7	137,305,965	137,410,322	RGD:5509061	MGI
G	Fgfrl1	fibroblast growth factor receptor-like 1		IAGP	5	109,123,248	109,135,969	RGD:5509061	MGI
G	Fig4	FIG4 homolog (S. cerevisiae)		IAGP	10	40,907,978	41,023,047	RGD:5509061	MGI
G	Fkbp8	FK506 binding protein 8		IAGP	8	73,051,642	73,059,227	RGD:5509061	MGI
G	Fkrp	fukutin related protein		IAGP	7	17,394,616	17,402,081	RGD:5509061	MGI
G	Fmr1	fragile X mental retardation syndrome 1		IAGP	X	65,931,730	65,971,138	RGD:5509061	MGI
G	Foxa2	forkhead box A2		IAGP	2	147,868,614	147,872,705	RGD:5509061	MGI
G	Foxb1	forkhead box B1		IAGP	9	69,605,517	69,608,747	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxj1	forkhead box J1		IAGP	11	116,192,018	116,196,668	RGD:5509061	MGI
G	Foxj1	forkhead box J1		IAGP	11	116,192,018	116,196,668	RGD:5509061	MGI
G	Gal3st1	galactose-3-O-sulfotransferase 1		IAGP	11	3,883,639	3,899,331	RGD:5509061	MGI
G	Galc	galactosylceramidase		IAGP	12	99,440,510	99,497,547	RGD:5509061	MGI
G	Gata3	GATA binding protein 3		IAGP	2	9,778,705	9,800,227	RGD:5509061	MGI
G	Gba	glucosidase, beta, acid		IAGP	3	89,006,850	89,012,603	RGD:5509061	MGI
G	Gba	glucosidase, beta, acid		IAGP	3	89,006,850	89,012,603	RGD:5509061	MGI
G	Gbe1	glucan (1,4-alpha-), branching enzyme 1		IAGP	16	70,314,332	70,569,961	RGD:5509061	MGI
G	Gdnf	glial cell line derived neurotrophic factor		IAGP	15	7,761,011	7,787,575	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Gja1	gap junction protein, alpha 1		IAGP	10	56,097,106	56,110,225	RGD:5509061	MGI
G	Gjc2	gap junction protein, gamma 2		IAGP	11	58,989,066	58,996,715	RGD:5509061	MGI
G	Glb1	galactosidase, beta 1		IAGP	9	114,310,237	114,383,495	RGD:5509061	MGI
G	Glb1	galactosidase, beta 1		IAGP	9	114,310,237	114,383,495	RGD:5509061	MGI
G	Glis1	GLIS family zinc finger 1		IAGP	4	107,107,324	107,307,664	RGD:5509061	MGI
G	Glul	glutamate-ammonia ligase (glutamine synthetase)		IAGP	1	155,747,075	155,756,844	RGD:5509061	MGI
G	Gm2a	GM2 ganglioside activator protein		IAGP	11	54,911,619	54,924,400	RGD:5509061	MGI
G	Gnb1	guanine nucleotide binding protein (G protein), beta 1		IAGP	4	154,865,470	154,933,378	RGD:5509061	MGI
G	Grip1	glutamate receptor interacting protein 1		IAGP	10	118,891,370	119,512,653	RGD:5509061	MGI
G	Grn	granulin		IAGP	11	102,291,636	102,298,123	RGD:5509061	MGI
G	Gsc	goosecoid homeobox		IAGP	12	105,709,419	105,711,446	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Hdc	histidine decarboxylase		IAGP	2	126,419,404	126,444,401	RGD:5509061	MGI
G	Hes1	hairy and enhancer of split 1 (Drosophila)		IAGP	16	30,065,443	30,067,882	RGD:5509061	MGI
G	Hes3	hairy and enhancer of split 3 (Drosophila)		IAGP	4	151,660,081	151,665,771	RGD:5509061	MGI
G	Hes5	hairy and enhancer of split 5 (Drosophila)		IAGP	4	154,335,032	154,336,480	RGD:5509061	MGI
G	Hexa	hexosaminidase A		IAGP	9	59,387,474	59,412,912	RGD:5509061	MGI
G	Hexb	hexosaminidase B		IAGP	13	97,946,286	97,968,312	RGD:5509061	MGI
G	Hlf	hepatic leukemia factor		IAGP	11	90,197,849	90,252,231	RGD:5509061	MGI
G	Hsf1	heat shock factor 1		IAGP	15	76,307,875	76,331,402	RGD:5509061	MGI
G	Hspg2	perlecan (heparan sulfate proteoglycan 2)		IAGP	4	137,024,718	137,126,545	RGD:5509061	MGI
G	Htra2	HtrA serine peptidase 2		IAGP	6	83,001,260	83,004,565	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Huwe1	HECT, UBA and WWE domain containing 1		IAGP	X	148,237,825	148,369,960	RGD:5509061	MGI
G	Ids	iduronate 2-sulfatase		IAGP	X	67,596,244	67,618,260	RGD:5509061	MGI
G	Idua	iduronidase, alpha-L-		IAGP	5	109,098,125	109,113,577	RGD:5509061	MGI
G	Igf1	insulin-like growth factor 1		IAGP	10	87,321,801	87,399,792	RGD:5509061	MGI
G	Itga6	integrin alpha 6		IAGP	2	71,625,140	71,694,815	RGD:5509061	MGI
G	Itgb1	integrin beta 1 (fibronectin receptor beta)		IAGP	8	131,209,554	131,257,479	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Kif3a	kinesin family member 3A		IAGP	11	53,380,881	53,417,746	RGD:5509061	MGI
G	Kifap3	kinesin-associated protein 3		IAGP	1	165,709,810	165,847,231	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	L1cam	L1 cell adhesion molecule		IAGP	X	71,099,119	71,126,173	RGD:5509061	MGI
G	Ldlr	low density lipoprotein receptor		IAGP	9	21,528,038	21,554,363	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx1	LIM homeobox protein 1		IAGP	11	84,332,881	84,339,036	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Limk1	LIM-domain containing, protein kinase		IAGP	5	135,131,909	135,164,460	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Macf1	microtubule-actin crosslinking factor 1		IAGP	4	123,026,959	123,361,603	RGD:5509061	MGI
G	Map3k12	mitogen-activated protein kinase kinase kinase 12		IAGP	15	102,328,078	102,347,435	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Med1	mediator complex subunit 1		IAGP	11	98,013,468	98,054,607	RGD:5509061	MGI
G	Meis1	Meis homeobox 1		IAGP	11	18,780,431	18,918,683	RGD:5509061	MGI
G	Mid1	midline 1		IAGP	X	166,123,179	166,428,730	RGD:5509061	MGI
G	Mpp5	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)		IAGP	12	79,849,934	79,941,701	RGD:5509061	MGI
G	Msx1	homeobox, msh-like 1		IAGP	5	38,211,730	38,215,824	RGD:5509061	MGI
G	Mut	methylmalonyl-Coenzyme A mutase		IAGP	17	41,071,634	41,098,938	RGD:5509061	MGI
G	Mycbp2	MYC binding protein 2		IAGP	14	103,512,628	103,746,017	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Ndst3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3		IAGP	3	123,229,084	123,375,310	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Nos1	nitric oxide synthase 1, neuronal		IAGP	5	118,317,128	118,403,822	RGD:5509061	MGI
G	Notch3	notch 3		IAGP	17	32,257,838	32,303,797	RGD:5509061	MGI
G	Npm1	nucleophosmin 1		IAGP	11	33,052,511	33,063,056	RGD:5509061	MGI
G	Ntrk2	neurotrophic tyrosine kinase, receptor, type 2		IAGP	13	58,907,957	59,231,337	RGD:5509061	MGI
G	Ofd1	oral-facial-digital syndrome 1 gene homolog (human)		IAGP	X	162,827,965	162,878,636	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Oxtr	oxytocin receptor		IAGP	6	112,423,678	112,439,802	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pak4	p21 protein (Cdc42/Rac)-activated kinase 4		IAGP	7	29,343,838	29,383,203	RGD:5509061	MGI
G	Patz1	POZ (BTB) and AT hook containing zinc finger 1		IAGP	11	3,190,460	3,208,520	RGD:5509061	MGI
G	Pax2	paired box gene 2		IAGP	19	44,831,884	44,910,517	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pcdh10	protocadherin 10		IAGP	3	45,182,320	45,238,501	RGD:5509061	MGI
G	Pdcd10	programmed cell death 10		IAGP	3	75,320,412	75,360,721	RGD:5509061	MGI
G	Pde6a	phosphodiesterase 6A, cGMP-specific, rod, alpha		IEA	18	61,380,153	61,449,404	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Pikfyve	phosphoinositide kinase, FYVE finger containing		IAGP	1	65,233,259	65,325,270	RGD:5509061	MGI
G	Pkhd1	polycystic kidney and hepatic disease 1		IAGP	1	20,047,860	20,608,138	RGD:5509061	MGI
G	Pla2g6	phospholipase A2, group VI		IEA	15	79,116,658	79,158,598	RGD:5509061	MGI
G	Plxnb2	plexin B2		IAGP	15	88,985,979	89,011,218	RGD:5509061	MGI
G	Ppard	peroxisome proliferator activator receptor delta		IAGP	17	28,369,699	28,438,414	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt2	palmitoyl-protein thioesterase 2		IAGP	17	34,753,607	34,764,042	RGD:5509061	MGI
G	Ppt2	palmitoyl-protein thioesterase 2		IAGP	17	34,753,607	34,764,042	RGD:5509061	MGI
G	Prkdc	protein kinase, DNA activated, catalytic polypeptide		IAGP	16	15,637,959	15,842,332	RGD:5509061	MGI
G	Prnp	prion protein		IAGP	2	131,735,664	131,764,167	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Rasa1	RAS p21 protein activator 1		IAGP	13	85,354,304	85,429,091	RGD:5509061	MGI
G	Rb1	retinoblastoma 1		IAGP	14	73,595,309	73,725,598	RGD:5509061	MGI
G	Rela	v-rel reticuloendotheliosis viral oncogene homolog A (avian)		IAGP	19	5,637,490	5,648,130	RGD:5509061	MGI
G	Rgn	regucalcin		IAGP	X	20,126,944	20,139,213	RGD:5509061	MGI
G	Rhoa	ras homolog gene family, member A		IAGP	9	108,208,536	108,240,270	RGD:5509061	MGI
G	Rora	RAR-related orphan receptor alpha		IAGP	9	68,501,609	69,226,838	RGD:5509061	MGI
G	Rqcd1	rcd1 (required for cell differentiation) homolog 1 (S. pombe)		IAGP	1	74,552,634	74,577,416	RGD:5509061	MGI
G	Scn8a	sodium channel, voltage-gated, type VIII, alpha		IEA	15	100,701,114	100,876,360	RGD:5509061	MGI
G	Scube1	signal peptide, CUB domain, EGF-like 1		IAGP	15	83,433,013	83,555,451	RGD:5509061	MGI
G	Slc12a6	solute carrier family 12, member 6		IEA	2	112,106,471	112,203,320	RGD:5509061	MGI
G	Slc25a12	solute carrier family 25 (mitochondrial carrier, Aralar), member 12		IAGP	2	71,112,352	71,205,611	RGD:5509061	MGI
G	Slc6a4	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4		IAGP	11	76,812,099	76,845,845	RGD:5509061	MGI
G	Snap25	synaptosomal-associated protein 25		IAGP	2	136,539,186	136,608,164	RGD:5509061	MGI
G	Soat1	sterol O-acyltransferase 1		IAGP	1	158,358,239	158,404,459	RGD:5509061	MGI
G	Sod2	superoxide dismutase 2, mitochondrial		IAGP	17	13,200,705	13,210,985	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Spef2	sperm flagellar 2		IAGP	15	9,592,491	9,678,561	RGD:5509061	MGI
G	Spta1	spectrin alpha, erythrocytic 1		IAGP	1	176,102,907	176,178,580	RGD:5509061	MGI
G	Sptb	spectrin beta, erythrocytic		IAGP	12	77,681,475	77,811,534	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	St8sia4	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4		IAGP	1	97,484,259	97,564,171	RGD:5509061	MGI
G	Stmn1	stathmin 1		IAGP	4	134,024,235	134,029,758	RGD:5509061	MGI
G	Sulf2	sulfatase 2		IAGP	2	165,898,589	165,981,156	RGD:5509061	MGI
G	Suz12	suppressor of zeste 12 homolog (Drosophila)		IAGP	11	79,806,608	79,847,625	RGD:5509061	MGI
G	Syn2	synapsin II		IAGP	6	115,084,920	115,232,644	RGD:5509061	MGI
G	Tef	thyrotroph embryonic factor		IAGP	15	81,633,103	81,657,293	RGD:5509061	MGI
G	Tk2	thymidine kinase 2, mitochondrial		IAGP	8	106,750,591	106,772,458	RGD:5509061	MGI
G	Tpp1	tripeptidyl peptidase I		IAGP	7	112,893,361	112,900,721	RGD:5509061	MGI
G	Trp53	transformation related protein 53		IAGP	11	69,393,861	69,405,375	RGD:5509061	MGI
G	Trp53bp2	transformation related protein 53 binding protein 2		IAGP	1	184,339,298	184,392,567	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Ttc21b	tetratricopeptide repeat domain 21B		IAGP	2	66,022,386	66,094,674	RGD:5509061	MGI
G	Tulp3	tubby-like protein 3		IAGP	6	128,271,179	128,305,869	RGD:5509061	MGI
G	Tymp	thymidine phosphorylase		IAGP	15	89,202,362	89,207,467	RGD:5509061	MGI
G	Upp1	uridine phosphorylase 1		IAGP	11	9,018,011	9,036,173	RGD:5509061	MGI
G	Usp14	ubiquitin specific peptidase 14		IAGP	18	9,993,613	10,030,147	RGD:5509061	MGI
G	Vac14	Vac14 homolog (S. cerevisiae)		IAGP	8	113,142,538	113,244,298	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IEA	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vim	vimentin		IAGP	2	13,495,938	13,504,453	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Wls	wntless homolog (Drosophila)		IAGP	3	159,502,659	159,598,042	RGD:5509061	MGI
G	Wwox	WW domain-containing oxidoreductase		IAGP	8	116,963,552	117,876,612	RGD:5509061	MGI
G	Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide		IAGP	11	75,546,389	75,579,343	RGD:5509061	MGI
Q	Eae15_m	susceptibility to experimental allergic encephalomyelitis 15 (mouse)		IAGP	10	4,252,061	38,252,183	RGD:5509061	MGI
Q	Eae16_m	susceptibility to experimental allergic encephalomyelitis 16 (mouse)		IAGP	12	8,358,024	42,358,167	RGD:5509061	MGI
Q	Eae21_m	experimental allergic encephalomyelitis 21 (mouse)		IAGP	2	48,277,459	82,277,647	RGD:5509061	MGI
Q	Eae22_m	experimental allergic encephalomyelitis 22 (mouse)		IAGP	11	82,348,186	116,348,308	RGD:5509061	MGI
Q	Eae23_m	experimental allergic encephalomyelitis 23 (mouse)		IAGP	11	58,641,942	58,651,970	RGD:5509061	MGI
abnormal brain size
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	E2f1	E2F transcription factor 1		IAGP	2	154,385,375	154,395,588	RGD:5509061	MGI
G	E2f3	E2F transcription factor 3		IAGP	13	29,998,444	30,077,932	RGD:5509061	MGI
G	Efna5	ephrin A5		IAGP	17	62,952,306	63,230,666	RGD:5509061	MGI
G	Flna	filamin, alpha		IAGP	X	71,468,800	71,491,873	RGD:5509061	MGI
G	Hmga2	high mobility group AT-hook 2		IAGP	10	119,798,331	119,913,991	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Plcb1	phospholipase C, beta 1		IAGP	2	134,611,900	135,300,994	RGD:5509061	MGI
G	Spen	SPEN homolog, transcriptional regulator (Drosophila)		IAGP	4	141,023,805	141,094,512	RGD:5509061	MGI
abnormal dentate gyrus morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	4930444A02Rik	RIKEN cDNA 4930444A02 gene		IAGP	8	27,091,076	27,104,593	RGD:5509061	MGI
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1		IAGP	7	112,706,998	112,730,049	RGD:5509061	MGI
G	Apbb2	amyloid beta (A4) precursor protein-binding, family B, member 2		IAGP	5	66,693,127	67,009,910	RGD:5509061	MGI
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Ccdc88a	coiled coil domain containing 88A		IAGP	11	29,273,775	29,410,812	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Cdk5r2	cyclin-dependent kinase 5, regulatory subunit 2 (p39)		IAGP	1	74,901,603	74,904,306	RGD:5509061	MGI
G	Cit	citron		IAGP	5	116,295,665	116,456,352	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Cxcr4	chemokine (C-X-C motif) receptor 4		IAGP	1	130,484,776	130,488,876	RGD:5509061	MGI
G	Cxcr4	chemokine (C-X-C motif) receptor 4		IAGP	1	130,484,776	130,488,876	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dffa	DNA fragmentation factor, alpha subunit		IAGP	4	148,478,262	148,494,759	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Eno2	enolase 2, gamma neuronal		IAGP	6	124,710,073	124,719,527	RGD:5509061	MGI
G	Eomes	eomesodermin homolog (Xenopus laevis)		IAGP	9	118,387,307	118,395,250	RGD:5509061	MGI
G	Fezf1	Fez family zinc finger 1		IAGP	6	23,195,047	23,198,264	RGD:5509061	MGI
G	Fezf2	Fez family zinc finger 2		IAGP	14	13,174,406	13,178,379	RGD:5509061	MGI
G	Fgf13	fibroblast growth factor 13		IAGP	X	56,315,327	56,387,613	RGD:5509061	MGI
G	Fmr1	fragile X mental retardation syndrome 1		IAGP	X	65,931,730	65,971,138	RGD:5509061	MGI
G	Fshr	follicle stimulating hormone receptor		IAGP	17	89,384,292	89,600,015	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fzd9	frizzled homolog 9 (Drosophila)		IAGP	5	135,724,808	135,726,917	RGD:5509061	MGI
G	Gak	cyclin G associated kinase		IAGP	5	108,998,433	109,058,758	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Mbd1	methyl-CpG binding domain protein 1		IAGP	18	74,427,942	74,442,338	RGD:5509061	MGI
G	Mdk	midkine		IAGP	2	91,769,978	91,772,439	RGD:5509061	MGI
G	Ncdn	neurochondrin		IAGP	4	126,420,994	126,430,673	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase		IAGP	4	115,823,123	115,832,449	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Pou1f1	POU domain, class 1, transcription factor 1		IAGP	16	65,520,964	65,534,316	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Slc2a8	solute carrier family 2, (facilitated glucose transporter), member 8		IAGP	2	32,828,509	32,837,576	RGD:5509061	MGI
G	Sox1	SRY-box containing gene 1		IAGP	8	12,395,519	12,399,555	RGD:5509061	MGI
G	Sp4	trans-acting transcription factor 4		IAGP	12	119,473,406	119,539,913	RGD:5509061	MGI
G	Tlr3	toll-like receptor 3		IAGP	8	46,481,019	46,495,893	RGD:5509061	MGI
G	Trio	triple functional domain (PTPRF interacting)		IAGP	15	27,660,404	27,955,603	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Usp14	ubiquitin specific peptidase 14		IAGP	18	9,993,613	10,030,147	RGD:5509061	MGI
G	Vim	vimentin		IAGP	2	13,495,938	13,504,453	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
Q	Hipp3_m	hippocampal weight 3 (mouse)		IAGP	13	30,811,017	64,811,164	RGD:5509061	MGI
Q	Hipp5_m	hippocampal weight 5 (mouse)		IAGP	11	844,334	34,844,436	RGD:5509061	MGI
abnormal forebrain morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acvr1b	activin A receptor, type 1B		IAGP	15	101,004,556	101,043,032	RGD:5509061	MGI
G	Alx1	ALX homeobox 1		IAGP	10	102,470,481	102,491,411	RGD:5509061	MGI
G	Ap3b1	adaptor-related protein complex 3, beta 1 subunit		IAGP	13	95,128,915	95,336,271	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Bmp4	bone morphogenetic protein 4		IAGP	14	47,003,195	47,010,274	RGD:5509061	MGI
G	Boc	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein		IAGP	16	44,485,158	44,558,983	RGD:5509061	MGI
G	Brsk1	BR serine/threonine kinase 1		IAGP	7	4,642,530	4,667,599	RGD:5509061	MGI
G	Brsk2	BR serine/threonine kinase 2		IAGP	7	149,135,656	149,190,149	RGD:5509061	MGI
G	Casp3	caspase 3		IAGP	8	47,702,803	47,724,071	RGD:5509061	MGI
G	Cckar	cholecystokinin A receptor		IAGP	5	54,089,724	54,098,943	RGD:5509061	MGI
G	Cdon	cell adhesion molecule-related/down-regulated by oncogenes		IAGP	9	35,259,661	35,315,237	RGD:5509061	MGI
G	Cdon	cell adhesion molecule-related/down-regulated by oncogenes		IAGP	9	35,259,661	35,315,237	RGD:5509061	MGI
G	Cenpa	centromere protein A		IAGP	5	30,969,275	30,977,199	RGD:5509061	MGI
G	Chrd	chordin		IAGP	16	20,733,200	20,742,457	RGD:5509061	MGI
G	Col2a1	collagen, type II, alpha 1		IAGP	15	97,806,033	97,835,155	RGD:5509061	MGI
G	Crebbp	CREB binding protein		IAGP	16	4,084,048	4,213,404	RGD:5509061	MGI
G	Csf1	colony stimulating factor 1 (macrophage)		IAGP	3	107,543,966	107,563,387	RGD:5509061	MGI
G	Disp1	dispatched homolog 1 (Drosophila)		IAGP				RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Dlg4	discs, large homolog 4 (Drosophila)		IAGP	11	69,832,107	69,859,034	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Erbb3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)		IAGP	10	128,006,424	128,026,557	RGD:5509061	MGI
G	Folr1	folate receptor 1 (adult)		IAGP	7	109,006,845	109,019,197	RGD:5509061	MGI
G	Foxa2	forkhead box A2		IAGP	2	147,868,614	147,872,705	RGD:5509061	MGI
G	Foxa2	forkhead box A2		IAGP	2	147,868,614	147,872,705	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IAGP	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxd1	forkhead box D1		IAGP	13	99,124,200	99,126,660	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Galc	galactosylceramidase		IAGP	12	99,440,510	99,497,547	RGD:5509061	MGI
G	Gdf1	growth differentiation factor 1		IAGP	8	72,839,674	72,855,487	RGD:5509061	MGI
G	Gdf7	growth differentiation factor 7		IAGP	12	8,304,724	8,308,760	RGD:5509061	MGI
G	Gdf7	growth differentiation factor 7		IAGP	12	8,304,724	8,308,760	RGD:5509061	MGI
G	Gsc	goosecoid homeobox		IAGP	12	105,709,419	105,711,446	RGD:5509061	MGI
G	Gsc	goosecoid homeobox		IAGP	12	105,709,419	105,711,446	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Hes1	hairy and enhancer of split 1 (Drosophila)		IAGP	16	30,065,443	30,067,882	RGD:5509061	MGI
G	Hes5	hairy and enhancer of split 5 (Drosophila)		IAGP	4	154,335,032	154,336,480	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hhex	hematopoietically expressed homeobox		IAGP	19	37,509,331	37,515,221	RGD:5509061	MGI
G	Hira	histone cell cycle regulation defective homolog A (S. cerevisiae)		IAGP	16	18,876,843	18,970,402	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Jun	Jun oncogene		IAGP	4	94,715,727	94,718,913	RGD:5509061	MGI
G	Kif2a	kinesin family member 2A		IAGP	13	107,750,665	107,812,194	RGD:5509061	MGI
G	Kifap3	kinesin-associated protein 3		IAGP	1	165,709,810	165,847,231	RGD:5509061	MGI
G	Lamp1	lysosomal-associated membrane protein 1		IAGP	8	13,159,135	13,175,338	RGD:5509061	MGI
G	Lamp2	lysosomal-associated membrane protein 2		IAGP	X	35,758,241	35,809,632	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Lmnb2	lamin B2		IAGP	10	80,364,108	80,380,990	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Lrp5	low density lipoprotein receptor-related protein 5		IAGP	19	3,584,825	3,686,564	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Lynx1	Ly6/neurotoxin 1		IAGP	15	74,578,286	74,583,409	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Mecom	MDS1 and EVI1 complex locus		IAGP	3	29,850,218	30,408,409	RGD:5509061	MGI
G	Mtor	mechanistic target of rapamycin (serine/threonine kinase)		IAGP	4	147,822,691	147,931,794	RGD:5509061	MGI
G	Napa	N-ethylmaleimide sensitive fusion protein attachment protein alpha		IAGP	7	16,683,992	16,703,324	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Ndst3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3		IAGP	3	123,229,084	123,375,310	RGD:5509061	MGI
G	Neurog2	neurogenin 2		IAGP	3	127,336,063	127,338,549	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nkx2-1	NK2 homeobox 1		IAGP	12	57,632,922	57,637,895	RGD:5509061	MGI
G	Nodal	nodal		IAGP	10	60,880,720	60,888,085	RGD:5509061	MGI
G	Nodal	nodal		IAGP	10	60,880,720	60,888,085	RGD:5509061	MGI
G	Nog	noggin		IAGP	11	89,161,952	89,163,873	RGD:5509061	MGI
G	Nsdhl	NAD(P) dependent steroid dehydrogenase-like		IAGP	X	70,163,860	70,203,867	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Pax3	paired box gene 3		IAGP	1	78,097,842	78,193,711	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pdpk1	3-phosphoinositide dependent protein kinase 1		IAGP	17	24,210,647	24,278,561	RGD:5509061	MGI
G	Pdpk1	3-phosphoinositide dependent protein kinase 1		IAGP	17	24,210,647	24,278,561	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Pou3f2	POU domain, class 3, transcription factor 2		IAGP	4	22,413,941	22,415,278	RGD:5509061	MGI
G	Pou3f3	POU domain, class 3, transcription factor 3		IAGP	1	42,753,991	42,757,055	RGD:5509061	MGI
G	Psap	prosaposin		IAGP	10	59,740,376	59,765,348	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen2	presenilin 2		IAGP	1	182,157,135	182,186,431	RGD:5509061	MGI
G	Rasa1	RAS p21 protein activator 1		IAGP	13	85,354,304	85,429,091	RGD:5509061	MGI
G	Rax	retina and anterior neural fold homeobox		IAGP	18	66,094,293	66,098,743	RGD:5509061	MGI
G	Rdh10	retinol dehydrogenase 10 (all-trans)		IAGP	1	16,095,963	16,122,631	RGD:5509061	MGI
G	Rest	RE1-silencing transcription factor		IAGP	5	77,694,519	77,712,722	RGD:5509061	MGI
G	Rpgrip1l	Rpgrip1-like		IAGP	8	93,740,929	93,837,121	RGD:5509061	MGI
G	S1pr1	sphingosine-1-phosphate receptor 1		IAGP	3	115,413,351	115,417,973	RGD:5509061	MGI
G	Scube1	signal peptide, CUB domain, EGF-like 1		IAGP	15	83,433,013	83,555,451	RGD:5509061	MGI
G	Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A		IAGP	18	47,404,908	47,528,522	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Ski	ski sarcoma viral oncogene homolog (avian)		IAGP	4	154,528,184	154,596,644	RGD:5509061	MGI
G	Smad1	SMAD family member 1		IAGP	8	81,862,294	81,923,367	RGD:5509061	MGI
G	Smad5	SMAD family member 5		IAGP	13	56,804,371	56,843,739	RGD:5509061	MGI
G	Smad5	SMAD family member 5		IAGP	13	56,804,371	56,843,739	RGD:5509061	MGI
G	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1		IAGP	9	110,034,528	110,142,682	RGD:5509061	MGI
G	Smo	smoothened homolog (Drosophila)		IAGP	6	29,685,497	29,711,366	RGD:5509061	MGI
G	Sod2	superoxide dismutase 2, mitochondrial		IAGP	17	13,200,705	13,210,985	RGD:5509061	MGI
G	Ss18l1	synovial sarcoma translocation gene on chromosome 18-like 1		IAGP	2	179,777,188	179,804,906	RGD:5509061	MGI
G	Tbr1	T-box brain gene 1		IAGP	2	61,642,510	61,652,171	RGD:5509061	MGI
G	Tcof1	Treacher Collins Franceschetti syndrome 1, homolog		IAGP	18	60,974,196	61,008,562	RGD:5509061	MGI
G	Tctn1	tectonic family member 1		IAGP	5	122,691,524	122,714,469	RGD:5509061	MGI
G	Tdgf1	teratocarcinoma-derived growth factor 1		IAGP	9	110,842,112	110,848,662	RGD:5509061	MGI
G	Tfap2a	transcription factor AP-2, alpha		IAGP	13	40,811,044	40,829,192	RGD:5509061	MGI
G	Tiam1	T cell lymphoma invasion and metastasis 1		IAGP	16	89,787,356	89,974,944	RGD:5509061	MGI
G	Tulp3	tubby-like protein 3		IAGP	6	128,271,179	128,305,869	RGD:5509061	MGI
G	Twsg1	twisted gastrulation homolog 1 (Drosophila)		IAGP	17	66,272,405	66,300,527	RGD:5509061	MGI
G	Tyro3	TYRO3 protein tyrosine kinase 3		IAGP	2	119,625,250	119,643,840	RGD:5509061	MGI
G	Vac14	Vac14 homolog (S. cerevisiae)		IAGP	8	113,142,538	113,244,298	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IEA	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Wls	wntless homolog (Drosophila)		IAGP	3	159,502,659	159,598,042	RGD:5509061	MGI
G	Wnt1	wingless-related MMTV integration site 1		IAGP	15	98,620,288	98,624,261	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic3	zinc finger protein of the cerebellum 3		IAGP	X	55,283,805	55,289,807	RGD:5509061	MGI
Q	Fbrwt1_m	forebrain weight 1 (mouse)		IAGP				RGD:5509061	MGI
Q	Fbrwt2_m	forebrain weight 2 (mouse)		IAGP				RGD:5509061	MGI
abnormal hippocampus development
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Chn2	chimerin (chimaerin) 2		IAGP	6	53,989,926	54,251,806	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx5	LIM homeobox protein 5		IAGP	5	120,881,895	120,891,466	RGD:5509061	MGI
G	Lmx1a	LIM homeobox transcription factor 1 alpha		IAGP	1	169,619,689	169,778,864	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Mbd1	methyl-CpG binding domain protein 1		IAGP	18	74,427,942	74,442,338	RGD:5509061	MGI
G	Mdk	midkine		IAGP	2	91,769,978	91,772,439	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Nfib	nuclear factor I/B		IAGP	4	81,936,077	82,151,212	RGD:5509061	MGI
G	Nr4a3	nuclear receptor subfamily 4, group A, member 3		IAGP	4	48,064,120	48,096,224	RGD:5509061	MGI
G	Nrp2	neuropilin 2		IAGP	1	62,749,891	62,865,266	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Sema3f	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F		IAGP	9	107,583,833	107,612,806	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Tlr3	toll-like receptor 3		IAGP	8	46,481,019	46,495,893	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Zbtb20	zinc finger and BTB domain containing 20		IAGP	16	43,247,397	43,619,241	RGD:5509061	MGI
G	Zic5	zinc finger protein of the cerebellum 5		IAGP	14	122,858,382	122,864,880	RGD:5509061	MGI
abnormal hippocampus morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Ap3m2	adaptor-related protein complex 3, mu 2 subunit		IAGP	8	23,897,826	23,916,126	RGD:5509061	MGI
G	Apoe	apolipoprotein E		IAGP	7	20,281,593	20,284,515	RGD:5509061	MGI
G	Atg5	autophagy related 5		IAGP	10	43,988,164	44,084,097	RGD:5509061	MGI
G	Bad	BCL2-associated agonist of cell death		IAGP	19	7,016,345	7,026,383	RGD:5509061	MGI
G	Basp1	brain abundant, membrane attached signal protein 1		IAGP	15	25,293,032	25,343,519	RGD:5509061	MGI
G	Bcan	brevican		IAGP	3	87,791,453	87,804,278	RGD:5509061	MGI
G	Bcl2l11	BCL2-like 11 (apoptosis facilitator)		IAGP	2	127,951,774	127,988,283	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Bid	BH3 interacting domain death agonist		IAGP	6	120,843,137	120,866,838	RGD:5509061	MGI
G	Brsk1	BR serine/threonine kinase 1		IAGP	7	4,642,530	4,667,599	RGD:5509061	MGI
G	Brsk2	BR serine/threonine kinase 2		IAGP	7	149,135,656	149,190,149	RGD:5509061	MGI
G	Cadm1	cell adhesion molecule 1		IAGP	9	47,338,435	47,661,468	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Cdkn1b	cyclin-dependent kinase inhibitor 1B		IAGP	6	134,870,419	134,875,543	RGD:5509061	MGI
G	Cit	citron		IAGP	5	116,295,665	116,456,352	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Col4a1	collagen, type IV, alpha 1		IAGP	8	11,198,423	11,312,826	RGD:5509061	MGI
G	Crk	v-crk sarcoma virus CT10 oncogene homolog (avian)		IAGP	11	75,492,812	75,519,594	RGD:5509061	MGI
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		IAGP	16	17,452,080	17,486,348	RGD:5509061	MGI
G	Cryab	crystallin, alpha B		IAGP	9	50,560,863	50,564,738	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Fabp7	fatty acid binding protein 7, brain		IAGP	10	57,504,729	57,508,256	RGD:5509061	MGI
G	Fgf13	fibroblast growth factor 13		IAGP	X	56,315,327	56,387,613	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IAGP	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Gal	galanin		IAGP	19	3,409,917	3,414,457	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Gja1	gap junction protein, alpha 1		IAGP	10	56,097,106	56,110,225	RGD:5509061	MGI
G	Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1		IAGP	1	195,047,834	195,090,239	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Hspb2	heat shock protein 2		IAGP	9	50,559,177	50,560,459	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Idua	iduronidase, alpha-L-		IAGP	5	109,098,125	109,113,577	RGD:5509061	MGI
G	Kcnq3	potassium voltage-gated channel, subfamily Q, member 3		IAGP	15	65,826,477	66,117,786	RGD:5509061	MGI
G	Kif1b	kinesin family member 1B		IAGP	4	148,550,430	148,681,807	RGD:5509061	MGI
G	Klk8	kallikrein related-peptidase 8		IAGP	7	51,052,947	51,059,192	RGD:5509061	MGI
G	L1cam	L1 cell adhesion molecule		IAGP	X	71,099,119	71,126,173	RGD:5509061	MGI
G	Ldlr	low density lipoprotein receptor		IAGP	9	21,528,038	21,554,363	RGD:5509061	MGI
G	Lhx6	LIM homeobox protein 6		IAGP	2	35,937,473	35,960,928	RGD:5509061	MGI
G	Limk1	LIM-domain containing, protein kinase		IAGP	5	135,131,909	135,164,460	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map2	microtubule-associated protein 2		IAGP	1	66,221,903	66,489,157	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mertk	c-mer proto-oncogene tyrosine kinase		IAGP	2	128,524,733	128,627,923	RGD:5509061	MGI
G	Mkl1	MKL (megakaryoblastic leukemia)/myocardin-like 1		IAGP	15	80,842,711	81,021,187	RGD:5509061	MGI
G	Mkl2	MKL/myocardin-like 2		IAGP	16	13,256,574	13,417,622	RGD:5509061	MGI
G	Mt3	metallothionein 3		IAGP	8	96,676,507	96,678,048	RGD:5509061	MGI
G	Mycbp2	MYC binding protein 2		IAGP	14	103,512,628	103,746,017	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nfia	nuclear factor I/A		IAGP	4	97,248,634	97,785,567	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Npas3	neuronal PAS domain protein 3		IAGP	12	54,349,664	55,173,162	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pex7	peroxisomal biogenesis factor 7		IAGP	10	19,579,896	19,627,480	RGD:5509061	MGI
G	Plxna3	plexin A3		IAGP	X	71,574,405	71,590,028	RGD:5509061	MGI
G	Pnpla6	patatin-like phospholipase domain containing 6		IAGP	8	3,515,384	3,544,267	RGD:5509061	MGI
G	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase		IAGP	4	115,823,123	115,832,449	RGD:5509061	MGI
G	Pou3f3	POU domain, class 3, transcription factor 3		IAGP	1	42,753,991	42,757,055	RGD:5509061	MGI
G	Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha		IAGP	5	51,845,488	51,945,160	RGD:5509061	MGI
G	Ppp1r9b	protein phosphatase 1, regulatory subunit 9B		IAGP	11	94,852,526	94,868,212	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Prkdc	protein kinase, DNA activated, catalytic polypeptide		IAGP	16	15,637,959	15,842,332	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Snca	synuclein, alpha		IAGP	6	60,681,567	60,779,849	RGD:5509061	MGI
G	Socs7	suppressor of cytokine signaling 7		IAGP	11	97,223,865	97,259,856	RGD:5509061	MGI
G	Sod2	superoxide dismutase 2, mitochondrial		IAGP	17	13,200,705	13,210,985	RGD:5509061	MGI
G	Sp4	trans-acting transcription factor 4		IAGP	12	119,473,406	119,539,913	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	Suz12	suppressor of zeste 12 homolog (Drosophila)		IAGP	11	79,806,608	79,847,625	RGD:5509061	MGI
G	Thra	thyroid hormone receptor alpha		IAGP	11	98,603,187	98,626,425	RGD:5509061	MGI
G	Top2b	topoisomerase (DNA) II beta		IAGP	14	17,197,720	17,263,301	RGD:5509061	MGI
G	Tph2	tryptophan hydroxylase 2		IAGP	10	114,515,697	114,622,078	RGD:5509061	MGI
G	Trib2	tribbles homolog 2 (Drosophila)		IAGP	12	15,798,533	15,823,591	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
G	Tyro3	TYRO3 protein tyrosine kinase 3		IAGP	2	119,625,250	119,643,840	RGD:5509061	MGI
G	Vac14	Vac14 homolog (S. cerevisiae)		IAGP	8	113,142,538	113,244,298	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Vps18	vacuolar protein sorting 18 (yeast)		IAGP	2	119,114,478	119,124,189	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide		IAGP	11	75,546,389	75,579,343	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic3	zinc finger protein of the cerebellum 3		IAGP	X	55,283,805	55,289,807	RGD:5509061	MGI
G	Zic5	zinc finger protein of the cerebellum 5		IAGP	14	122,858,382	122,864,880	RGD:5509061	MGI
Q	Gbrln_m	granular brain lesions (mouse)		IAGP	7	48,754,442	82,754,587	RGD:5509061	MGI
abnormal telencephalon morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	Arl6	ADP-ribosylation factor-like 6		IAGP	16	59,613,147	59,639,165	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Bag6	BCL2-associated athanogene 6		IAGP	17	35,272,187	35,284,181	RGD:5509061	MGI
G	Casp9	caspase 9		IAGP	4	141,349,527	141,371,890	RGD:5509061	MGI
G	Chrd	chordin		IAGP	16	20,733,200	20,742,457	RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fzd3	frizzled homolog 3 (Drosophila)		IAGP	14	65,811,278	65,881,300	RGD:5509061	MGI
G	Gli1	GLI-Kruppel family member GLI1		IAGP	10	126,766,938	126,778,635	RGD:5509061	MGI
G	Gli2	GLI-Kruppel family member GLI2		IAGP	1	120,730,638	120,950,196	RGD:5509061	MGI
G	Gpr124	G protein-coupled receptor 124		IAGP	8	28,196,313	28,233,894	RGD:5509061	MGI
G	Gpr124	G protein-coupled receptor 124		IAGP	8	28,196,313	28,233,894	RGD:5509061	MGI
G	Gsx2	GS homeobox 2		IAGP	5	75,471,626	75,473,918	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hey1	hairy/enhancer-of-split related with YRPW motif 1		IAGP	3	8,663,359	8,667,038	RGD:5509061	MGI
G	Hey2	hairy/enhancer-of-split related with YRPW motif 2		IAGP	10	30,552,165	30,562,589	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Hspg2	perlecan (heparan sulfate proteoglycan 2)		IAGP	4	137,024,718	137,126,545	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Hydin	HYDIN, axonemal central pair apparatus protein		IAGP	8	112,790,877	113,134,153	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Lhx1	LIM homeobox protein 1		IAGP	11	84,332,881	84,339,036	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mir9-2	microRNA 9-2		IAGP	13	83,878,419	83,878,490	RGD:5509061	MGI
G	Mir9-3	microRNA 9-3		IAGP	7	86,650,150	86,650,239	RGD:5509061	MGI
G	Ncor2	nuclear receptor co-repressor 2		IAGP	5	125,497,525	125,659,584	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Nog	noggin		IAGP	11	89,161,952	89,163,873	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pcdh10	protocadherin 10		IAGP	3	45,182,320	45,238,501	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Psap	prosaposin		IAGP	10	59,740,376	59,765,348	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Rfx4	regulatory factor X, 4 (influences HLA class II expression)		IAGP	10	84,218,793	84,369,283	RGD:5509061	MGI
G	S1pr1	sphingosine-1-phosphate receptor 1		IAGP	3	115,413,351	115,417,973	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2		IAGP	2	102,498,840	102,630,941	RGD:5509061	MGI
G	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1		IAGP	9	110,034,528	110,142,682	RGD:5509061	MGI
G	Spen	SPEN homolog, transcriptional regulator (Drosophila)		IAGP	4	141,023,805	141,094,512	RGD:5509061	MGI
G	Tctn1	tectonic family member 1		IAGP	5	122,691,524	122,714,469	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
absent Cajal-Retzius cell
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Wnt3a	wingless-related MMTV integration site 3A		IAGP	11	59,061,538	59,104,253	RGD:5509061	MGI
absent hippocampus
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
decreased brain size
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	A930011O12Rik	RIKEN cDNA A930011O12 gene		IAGP				RGD:5509061	MGI
G	Aatk	apoptosis-associated tyrosine kinase		IAGP	11	119,868,627	119,908,029	RGD:5509061	MGI
G	Ahi1	Abelson helper integration site 1		IAGP	10	20,672,391	20,800,235	RGD:5509061	MGI
G	Aifm1	apoptosis-inducing factor, mitochondrion-associated 1		IAGP	X	45,828,121	45,866,603	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	Arhgap33	Rho GTPase activating protein 33		IAGP	7	31,307,245	31,320,028	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Atf2	activating transcription factor 2		IAGP	2	73,654,578	73,730,685	RGD:5509061	MGI
G	Atr	ataxia telangiectasia and Rad3 related		IAGP	9	95,758,016	95,852,063	RGD:5509061	MGI
G	Atr	ataxia telangiectasia and Rad3 related		IAGP	9	95,758,016	95,852,063	RGD:5509061	MGI
G	Atxn7	ataxin 7		IAGP	14	14,845,005	14,939,816	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Bhlhe22	basic helix-loop-helix family, member e22		IAGP	3	17,954,325	17,957,514	RGD:5509061	MGI
G	Ccdc88a	coiled coil domain containing 88A		IAGP	11	29,273,775	29,410,812	RGD:5509061	MGI
G	Cdk5rap2	CDK5 regulatory subunit associated protein 2		IAGP	4	69,884,058	70,071,401	RGD:5509061	MGI
G	Ckb	creatine kinase, brain		IAGP	12	112,907,566	112,910,549	RGD:5509061	MGI
G	Ckmt1	creatine kinase, mitochondrial 1, ubiquitous		IAGP	2	121,184,377	121,189,473	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Dbh	dopamine beta hydroxylase		IAGP	2	27,021,027	27,038,724	RGD:5509061	MGI
G	Dhcr7	7-dehydrocholesterol reductase		IAGP	7	151,009,072	151,034,315	RGD:5509061	MGI
G	Dhcr7	7-dehydrocholesterol reductase		IAGP	7	151,009,072	151,034,315	RGD:5509061	MGI
G	Disc1	disrupted in schizophrenia 1		IAGP	8	127,578,095	127,785,051	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Egfr	epidermal growth factor receptor		IAGP	11	16,652,206	16,813,910	RGD:5509061	MGI
G	Eif4h	eukaryotic translation initiation factor 4H		IAGP	5	135,095,746	135,115,198	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Eomes	eomesodermin homolog (Xenopus laevis)		IAGP	9	118,387,307	118,395,250	RGD:5509061	MGI
G	Epb4.1l1	erythrocyte protein band 4.1-like 1		IAGP	2	156,246,788	156,368,950	RGD:5509061	MGI
G	Epb4.1l2	erythrocyte protein band 4.1-like 2		IAGP	10	25,128,178	25,243,320	RGD:5509061	MGI
G	Esr2	estrogen receptor 2 (beta)		IAGP	12	77,221,406	77,278,246	RGD:5509061	MGI
G	Fgfr2	fibroblast growth factor receptor 2		IAGP	7	137,305,965	137,410,322	RGD:5509061	MGI
G	Foxp2	forkhead box P2		IAGP	6	14,851,349	15,391,977	RGD:5509061	MGI
G	Frs2	fibroblast growth factor receptor substrate 2		IAGP	10	116,507,183	116,585,530	RGD:5509061	MGI
G	Gad1	glutamate decarboxylase 1		IAGP	2	70,400,221	70,440,069	RGD:5509061	MGI
G	Gba	glucosidase, beta, acid		IAGP	3	89,006,850	89,012,603	RGD:5509061	MGI
G	Gcm2	glial cells missing homolog 2 (Drosophila)		IAGP	13	41,196,796	41,205,357	RGD:5509061	MGI
G	Gnb1	guanine nucleotide binding protein (G protein), beta 1		IAGP	4	154,865,470	154,933,378	RGD:5509061	MGI
G	Hap1	huntingtin-associated protein 1		IAGP	11	100,208,641	100,217,455	RGD:5509061	MGI
G	Htra2	HtrA serine peptidase 2		IAGP	6	83,001,260	83,004,565	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Huwe1	HECT, UBA and WWE domain containing 1		IAGP	X	148,237,825	148,369,960	RGD:5509061	MGI
G	Igf1r	insulin-like growth factor I receptor		IAGP	7	75,097,143	75,378,553	RGD:5509061	MGI
G	Insc	inscuteable homolog (Drosophila)		IAGP	7	121,889,280	121,993,894	RGD:5509061	MGI
G	Itpr1	inositol 1,4,5-trisphosphate receptor 1		IAGP	6	108,163,090	108,501,108	RGD:5509061	MGI
G	Kat6b	K(lysine) acetyltransferase 6B		IAGP	14	22,319,076	22,491,355	RGD:5509061	MGI
G	Kat6b	K(lysine) acetyltransferase 6B		IAGP	14	22,319,076	22,491,355	RGD:5509061	MGI
G	Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10		IAGP	1	174,271,341	174,304,216	RGD:5509061	MGI
G	Kif1b	kinesin family member 1B		IAGP	4	148,550,430	148,681,807	RGD:5509061	MGI
G	Kif5c	kinesin family member 5C		IAGP	2	49,474,834	49,630,298	RGD:5509061	MGI
G	Lamc1	laminin, gamma 1		IAGP	1	155,066,052	155,179,916	RGD:5509061	MGI
G	Lig3	ligase III, DNA, ATP-dependent		IAGP	11	82,594,637	82,617,776	RGD:5509061	MGI
G	Lig4	ligase IV, DNA, ATP-dependent		IAGP	8	9,970,020	9,976,323	RGD:5509061	MGI
G	Lmnb2	lamin B2		IAGP	10	80,364,108	80,380,990	RGD:5509061	MGI
G	Lmx1a	LIM homeobox transcription factor 1 alpha		IEA	1	169,619,689	169,778,864	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Magoh	mago-nashi homolog, proliferation-associated (Drosophila)		IAGP	4	107,552,418	107,560,003	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Marcks	myristoylated alanine rich protein kinase C substrate		IAGP	10	36,853,049	36,858,732	RGD:5509061	MGI
G	Mcoln1	mucolipin 1		IAGP	8	3,500,519	3,515,232	RGD:5509061	MGI
G	Mcph1	microcephaly, primary autosomal recessive 1		IAGP	8	18,595,173	18,803,189	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mir124a-1	microRNA 124a-1		IAGP	14	65,209,494	65,209,578	RGD:5509061	MGI
G	Msx1	homeobox, msh-like 1		IAGP	5	38,211,730	38,215,824	RGD:5509061	MGI
G	Msx2	homeobox, msh-like 2		IAGP	13	53,562,250	53,568,149	RGD:5509061	MGI
G	Ncam1	neural cell adhesion molecule 1		IAGP	9	49,310,243	49,607,174	RGD:5509061	MGI
G	Nde1	nuclear distribution gene E homolog 1 (A nidulans)		IAGP	16	14,163,368	14,193,021	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
G	Nipbl	Nipped-B homolog (Drosophila)		IAGP	15	8,241,225	8,394,463	RGD:5509061	MGI
G	Nlgn3	neuroligin 3		IAGP	X	98,494,520	98,516,689	RGD:5509061	MGI
G	Nlgn4l	neuroligin 4-like		IAGP				RGD:5509061	MGI
G	Npc1	Niemann Pick type C1		IAGP	18	12,348,203	12,394,895	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Otc	ornithine transcarbamylase		IAGP	X	9,829,485	9,898,150	RGD:5509061	MGI
G	Otp	orthopedia homolog (Drosophila)		IAGP	13	95,645,582	95,653,636	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Patz1	POZ (BTB) and AT hook containing zinc finger 1		IAGP	11	3,190,460	3,208,520	RGD:5509061	MGI
G	Pcnt	pericentrin (kendrin)		IAGP	10	75,813,999	75,905,657	RGD:5509061	MGI
G	Pdpk1	3-phosphoinositide dependent protein kinase 1		IAGP	17	24,210,647	24,278,561	RGD:5509061	MGI
G	Pex2	peroxisomal biogenesis factor 2		IAGP	3	5,560,188	5,576,239	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Ppard	peroxisome proliferator activator receptor delta		IAGP	17	28,369,699	28,438,414	RGD:5509061	MGI
G	Ppp1r9b	protein phosphatase 1, regulatory subunit 9B		IAGP	11	94,852,526	94,868,212	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt2	palmitoyl-protein thioesterase 2		IAGP	17	34,753,607	34,764,042	RGD:5509061	MGI
G	Prkab1	protein kinase, AMP-activated, beta 1 non-catalytic subunit		IAGP	5	116,463,599	116,474,437	RGD:5509061	MGI
G	Pthlh	parathyroid hormone-like peptide		IAGP	6	147,200,632	147,212,607	RGD:5509061	MGI
G	Ptpn9	protein tyrosine phosphatase, non-receptor type 9		IAGP	9	56,842,775	56,910,615	RGD:5509061	MGI
G	Ptprs	protein tyrosine phosphatase, receptor type, S		IAGP	17	56,551,849	56,615,903	RGD:5509061	MGI
G	Rb1	retinoblastoma 1		IAGP	14	73,595,309	73,725,598	RGD:5509061	MGI
G	Scn1a	sodium channel, voltage-gated, type I, alpha		IAGP	2	66,108,839	66,278,894	RGD:5509061	MGI
G	Sema3a	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A		IAGP	5	13,399,309	13,602,571	RGD:5509061	MGI
G	Shc1	src homology 2 domain-containing transforming protein C1		IAGP	3	89,222,473	89,233,951	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Smo	smoothened homolog (Drosophila)		IAGP	6	29,685,497	29,711,366	RGD:5509061	MGI
G	Smpd1	sphingomyelin phosphodiesterase 1, acid lysosomal		IAGP	7	112,702,874	112,706,903	RGD:5509061	MGI
G	Sox1	SRY-box containing gene 1		IAGP	8	12,395,519	12,399,555	RGD:5509061	MGI
G	Sptb	spectrin beta, erythrocytic		IAGP	12	77,681,475	77,811,534	RGD:5509061	MGI
G	Syngap1	synaptic Ras GTPase activating protein 1 homolog (rat)		IAGP	17	27,078,397	27,107,590	RGD:5509061	MGI
G	Tbr1	T-box brain gene 1		IAGP	2	61,642,510	61,652,171	RGD:5509061	MGI
G	Th	tyrosine hydroxylase		IAGP	7	150,078,681	150,085,871	RGD:5509061	MGI
G	Top2b	topoisomerase (DNA) II beta		IAGP	14	17,197,720	17,263,301	RGD:5509061	MGI
G	Trim71	tripartite motif-containing 71		IAGP	9	114,420,386	114,473,487	RGD:5509061	MGI
G	Trio	triple functional domain (PTPRF interacting)		IAGP	15	27,660,404	27,955,603	RGD:5509061	MGI
G	Trip11	thyroid hormone receptor interactor 11		IAGP	12	103,075,582	103,151,381	RGD:5509061	MGI
G	Vcl	vinculin		IAGP	14	21,748,655	21,852,895	RGD:5509061	MGI
G	Vegfa	vascular endothelial growth factor A		IAGP	17	46,153,942	46,169,326	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Vps18	vacuolar protein sorting 18 (yeast)		IAGP	2	119,114,478	119,124,189	RGD:5509061	MGI
G	Vti1a	vesicle transport through interaction with t-SNAREs 1A		IAGP	19	55,390,841	55,701,051	RGD:5509061	MGI
G	Vti1b	vesicle transport through interaction with t-SNAREs 1B		IAGP	12	80,257,004	80,273,445	RGD:5509061	MGI
G	Wasf1	WAS protein family, member 1		IAGP	10	40,603,340	40,658,375	RGD:5509061	MGI
G	Xrcc1	X-ray repair complementing defective repair in Chinese hamster cells 1		IAGP	7	25,332,169	25,358,457	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
G	Zfp191	zinc finger protein 191		IAGP	18	24,170,768	24,179,272	RGD:5509061	MGI
G	Zfp335	zinc finger protein 335		IAGP	2	164,717,392	164,737,250	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic2	zinc finger protein of the cerebellum 2		IEA	14	122,874,606	122,879,550	RGD:5509061	MGI
Q	Cbm1_m	cerebellum weight 1 (mouse)		IAGP	1	159,558,864	193,559,001	RGD:5509061	MGI
Q	Cbm2_m	cerebellum weight 2 (mouse)		IAGP	8	81,042,513	115,042,603	RGD:5509061	MGI
decreased brain weight
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	A930011O12Rik	RIKEN cDNA A930011O12 gene		IAGP				RGD:5509061	MGI
G	Akt2	thymoma viral proto-oncogene 2		IAGP	7	28,376,579	28,424,472	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	Ass1	argininosuccinate synthetase 1		IAGP	2	31,325,790	31,376,190	RGD:5509061	MGI
G	Atr	ataxia telangiectasia and Rad3 related		IAGP	9	95,758,016	95,852,063	RGD:5509061	MGI
G	Atxn1	ataxin 1		IAGP	13	45,650,262	46,060,345	RGD:5509061	MGI
G	B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2		IAGP	4	117,545,624	117,556,074	RGD:5509061	MGI
G	Bckdk	branched chain ketoacid dehydrogenase kinase		IAGP	7	135,047,587	135,053,178	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Cacna2d2	calcium channel, voltage-dependent, alpha 2/delta subunit 2		IAGP	9	107,302,211	107,431,674	RGD:5509061	MGI
G	Cers1	ceramide synthase 1		IAGP	8	72,839,674	72,855,487	RGD:5509061	MGI
G	Cit	citron		IAGP	5	116,295,665	116,456,352	RGD:5509061	MGI
G	Ckb	creatine kinase, brain		IAGP	12	112,907,566	112,910,549	RGD:5509061	MGI
G	Ckmt1	creatine kinase, mitochondrial 1, ubiquitous		IAGP	2	121,184,377	121,189,473	RGD:5509061	MGI
G	Col1a1	collagen, type I, alpha 1		IAGP	11	94,797,584	94,813,181	RGD:5509061	MGI
G	Cox10	cytochrome c oxidase assembly protein 10		IAGP	11	63,776,129	63,892,974	RGD:5509061	MGI
G	Ctsf	cathepsin F		IAGP	19	4,855,129	4,860,912	RGD:5509061	MGI
G	D3Bwg0562e	DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed		IAGP	3	117,022,063	117,063,794	RGD:5509061	MGI
G	Dedd	death effector domain-containing		IAGP	1	173,259,276	173,272,632	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Fas	Fas (TNF receptor superfamily member 6)		IAGP	19	34,365,149	34,402,260	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Ghr	growth hormone receptor		IAGP	15	3,267,760	3,533,230	RGD:5509061	MGI
G	Gnpat	glyceronephosphate O-acyltransferase		IAGP	8	127,386,933	127,413,957	RGD:5509061	MGI
G	Hap1	huntingtin-associated protein 1		IAGP	11	100,208,641	100,217,455	RGD:5509061	MGI
G	Hdac2	histone deacetylase 2		IAGP	10	36,694,350	36,721,694	RGD:5509061	MGI
G	Hsd17b2	hydroxysteroid (17-beta) dehydrogenase 2		IAGP	8	120,225,846	120,282,929	RGD:5509061	MGI
G	Htra2	HtrA serine peptidase 2		IAGP	6	83,001,260	83,004,565	RGD:5509061	MGI
G	Lama2	laminin, alpha 2		IAGP	10	26,701,091	27,336,748	RGD:5509061	MGI
G	Lig4	ligase IV, DNA, ATP-dependent		IAGP	8	9,970,020	9,976,323	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Mbd1	methyl-CpG binding domain protein 1		IAGP	18	74,427,942	74,442,338	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mir124a-1	microRNA 124a-1		IAGP	14	65,209,494	65,209,578	RGD:5509061	MGI
G	Nbn	nibrin		IAGP	4	15,885,114	15,919,736	RGD:5509061	MGI
G	Nbn	nibrin		IAGP	4	15,885,114	15,919,736	RGD:5509061	MGI
G	Nde1	nuclear distribution gene E homolog 1 (A nidulans)		IAGP	16	14,163,368	14,193,021	RGD:5509061	MGI
G	Npc1	Niemann Pick type C1		IAGP	18	12,348,203	12,394,895	RGD:5509061	MGI
G	Npc1	Niemann Pick type C1		IAGP	18	12,348,203	12,394,895	RGD:5509061	MGI
G	Nrd1	nardilysin, N-arginine dibasic convertase, NRD convertase 1		IAGP	4	108,673,410	108,734,376	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Pdha1	pyruvate dehydrogenase E1 alpha 1		IAGP	X	156,560,151	156,576,268	RGD:5509061	MGI
G	Pfdn5	prefoldin 5		IAGP	15	102,156,547	102,161,921	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Pikfyve	phosphoinositide kinase, FYVE finger containing		IAGP	1	65,233,259	65,325,270	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt2	palmitoyl-protein thioesterase 2		IAGP	17	34,753,607	34,764,042	RGD:5509061	MGI
G	Rheb	Ras homolog enriched in brain		IAGP	5	24,308,641	24,348,179	RGD:5509061	MGI
G	Scn1a	sodium channel, voltage-gated, type I, alpha		IAGP	2	66,108,839	66,278,894	RGD:5509061	MGI
G	Sfrp1	secreted frizzled-related protein 1		IAGP	8	24,521,974	24,560,104	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Sirt1	sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)		IAGP	10	62,781,753	62,801,783	RGD:5509061	MGI
G	Sirt2	sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae)		IAGP	7	29,551,771	29,573,684	RGD:5509061	MGI
G	Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1		IAGP	4	118,781,350	118,809,935	RGD:5509061	MGI
G	Spen	SPEN homolog, transcriptional regulator (Drosophila)		IAGP	4	141,023,805	141,094,512	RGD:5509061	MGI
G	Syn2	synapsin II		IAGP	6	115,084,920	115,232,644	RGD:5509061	MGI
G	Tert	telomerase reverse transcriptase		IAGP	13	73,764,449	73,786,489	RGD:5509061	MGI
G	Tg	thyroglobulin		IAGP	15	66,502,332	66,682,283	RGD:5509061	MGI
G	Tkt	transketolase		IAGP	14	31,362,335	31,387,908	RGD:5509061	MGI
G	Ube3a	ubiquitin protein ligase E3A		IAGP	7	66,484,120	66,562,097	RGD:5509061	MGI
G	Uqcrfs1	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1		IAGP	13	30,632,181	30,637,185	RGD:5509061	MGI
G	Vamp7	vesicle-associated membrane protein 7		IAGP				RGD:5509061	MGI
G	Vim	vimentin		IAGP	2	13,495,938	13,504,453	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Zdhhc13	zinc finger, DHHC domain containing 13		IAGP	7	56,044,373	56,082,807	RGD:5509061	MGI
G	Zdhhc17	zinc finger, DHHC domain containing 17		IAGP	10	110,378,835	110,447,122	RGD:5509061	MGI
G	Zfp568	zinc finger protein 568		IAGP	7	30,768,974	30,813,301	RGD:5509061	MGI
Q	Brnwq_m	brain weight QTL (mouse)		IAGP				RGD:5509061	MGI
Q	Brwq1_m	brain weight QTL 1 (mouse)		IAGP	11	79,868,181	113,868,314	RGD:5509061	MGI
Q	Cbm1_m	cerebellum weight 1 (mouse)		IAGP	1	159,558,864	193,559,001	RGD:5509061	MGI
Q	Cbm2_m	cerebellum weight 2 (mouse)		IAGP	8	81,042,513	115,042,603	RGD:5509061	MGI
forebrain hypoplasia
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Akap13	A kinase (PRKA) anchor protein 13		IAGP	7	82,600,420	82,899,495	RGD:5509061	MGI
G	Arid1a	AT rich interactive domain 1A (SWI-like)		IAGP	4	133,234,923	133,309,526	RGD:5509061	MGI
G	Arnt	aryl hydrocarbon receptor nuclear translocator		IAGP	3	95,238,312	95,301,162	RGD:5509061	MGI
G	Cycs	cytochrome c, somatic		IAGP	6	50,512,562	50,516,473	RGD:5509061	MGI
G	Dnm1l	dynamin 1-like		IAGP	16	16,312,326	16,359,123	RGD:5509061	MGI
G	Erf	Ets2 repressor factor		IAGP	7	26,027,579	26,035,777	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7		IAGP	1	171,879,668	171,899,336	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Pax3	paired box gene 3		IAGP	1	78,097,842	78,193,711	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Setd2	SET domain containing 2		IAGP	9	110,435,101	110,521,137	RGD:5509061	MGI
G	Smo	smoothened homolog (Drosophila)		IAGP	6	29,685,497	29,711,366	RGD:5509061	MGI
G	Sp8	trans-acting transcription factor 8		IAGP	12	120,084,802	120,091,051	RGD:5509061	MGI
G	Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)		IAGP	6	72,576,374	72,738,950	RGD:5509061	MGI
G	Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)		IAGP	6	72,576,374	72,738,950	RGD:5509061	MGI
G	Tulp3	tubby-like protein 3		IAGP	6	128,271,179	128,305,869	RGD:5509061	MGI
increased brain size
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	Ate1	arginyltransferase 1		IAGP	7	137,535,007	137,663,475	RGD:5509061	MGI
G	Bak1	BCL2-antagonist/killer 1		IAGP	17	27,156,757	27,165,571	RGD:5509061	MGI
G	Bax	BCL2-associated X protein		IAGP	7	52,717,065	52,722,268	RGD:5509061	MGI
G	Cnp	2',3'-cyclic nucleotide 3' phosphodiesterase		IAGP	11	100,436,253	100,443,053	RGD:5509061	MGI
G	Cux2	cut-like homeobox 2		IAGP	5	122,310,225	122,497,834	RGD:5509061	MGI
G	Dag1	dystroglycan 1		IAGP	9	108,108,289	108,166,067	RGD:5509061	MGI
G	Dlg5	discs, large homolog 5 (Drosophila)		IAGP	14	24,953,175	25,065,142	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Fgfr2	fibroblast growth factor receptor 2		IAGP	7	137,305,965	137,410,322	RGD:5509061	MGI
G	Gpr85	G protein-coupled receptor 85		IAGP	6	13,785,071	13,789,848	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Gulo	gulonolactone (L-) oxidase		IAGP	14	66,605,624	66,628,047	RGD:5509061	MGI
G	Igf2r	insulin-like growth factor 2 receptor		IAGP	17	12,875,272	12,962,572	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Kifap3	kinesin-associated protein 3		IAGP	1	165,709,810	165,847,231	RGD:5509061	MGI
G	Mark2	MAP/microtubule affinity-regulating kinase 2		IAGP	19	7,349,886	7,416,334	RGD:5509061	MGI
G	Ophn1	oligophrenin 1		IAGP	X	95,752,854	96,086,324	RGD:5509061	MGI
G	Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1		IAGP	10	7,350,034	7,383,382	RGD:5509061	MGI
G	Pdcd10	programmed cell death 10		IAGP	3	75,320,412	75,360,721	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Rb1	retinoblastoma 1		IAGP	14	73,595,309	73,725,598	RGD:5509061	MGI
G	Sirt1	sirtuin 1 (silent mating type information regulation 2, homolog) 1 (S. cerevisiae)		IAGP	10	62,781,753	62,801,783	RGD:5509061	MGI
G	Trp53	transformation related protein 53		IAGP	11	69,393,861	69,405,375	RGD:5509061	MGI
G	Trp53	transformation related protein 53		IAGP	11	69,393,861	69,405,375	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tsc2	tuberous sclerosis 2		IAGP	17	24,732,882	24,769,574	RGD:5509061	MGI
Q	Bsc1_m	brain size control 1 (mouse)		IAGP	10	58,143,880	92,144,007	RGD:5509061	MGI
increased brain weight
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Adipor2	adiponectin receptor 2		IAGP	6	119,303,168	119,367,501	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	Ate1	arginyltransferase 1		IAGP	7	137,535,007	137,663,475	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Cdkn1a	cyclin-dependent kinase inhibitor 1A (P21)		IAGP	17	29,227,931	29,237,667	RGD:5509061	MGI
G	Cdkn1b	cyclin-dependent kinase inhibitor 1B		IAGP	6	134,870,419	134,875,543	RGD:5509061	MGI
G	Ctnna1	catenin (cadherin associated protein), alpha 1		IAGP	18	35,278,566	35,414,429	RGD:5509061	MGI
G	Cyp11b1	cytochrome P450, family 11, subfamily b, polypeptide 1		IAGP	15	74,665,322	74,672,073	RGD:5509061	MGI
G	Ddit3	DNA-damage inducible transcript 3		IAGP	10	126,727,849	126,733,344	RGD:5509061	MGI
G	Ghr	growth hormone receptor		IAGP	15	3,267,760	3,533,230	RGD:5509061	MGI
G	Ghr	growth hormone receptor		IAGP	15	3,267,760	3,533,230	RGD:5509061	MGI
G	Ghr	growth hormone receptor		IAGP	15	3,267,760	3,533,230	RGD:5509061	MGI
G	Ghr	growth hormone receptor		IAGP	15	3,267,760	3,533,230	RGD:5509061	MGI
G	Gpr85	G protein-coupled receptor 85		IAGP	6	13,785,071	13,789,848	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Mbd5	methyl-CpG binding domain protein 5		IAGP	2	48,805,028	49,172,589	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Pappa2	pappalysin 2		IAGP	1	160,641,862	160,887,569	RGD:5509061	MGI
G	Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1		IAGP	10	7,350,034	7,383,382	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Rb1	retinoblastoma 1		IAGP	14	73,595,309	73,725,598	RGD:5509061	MGI
G	Slc12a6	solute carrier family 12, member 6		IAGP	2	112,106,471	112,203,320	RGD:5509061	MGI
G	Smarca1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1		IAGP	X	45,162,547	45,245,729	RGD:5509061	MGI
G	Spef2	sperm flagellar 2		IAGP	15	9,592,491	9,678,561	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tsc2	tuberous sclerosis 2		IAGP	17	24,732,882	24,769,574	RGD:5509061	MGI
G	Wwox	WW domain-containing oxidoreductase		IAGP	8	116,963,552	117,876,612	RGD:5509061	MGI
Q	Brwt1_m	brain weight 1 (mouse)		IAGP				RGD:5509061	MGI
Q	Brwt2_m	brain weight 2 (mouse)		IAGP				RGD:5509061	MGI
Q	Brwt3_m	brain weight 3 (mouse)		IAGP				RGD:5509061	MGI
Q	Brwt4_m	brain weight 4 (mouse)		IAGP				RGD:5509061	MGI
Q	Bsc1_m	brain size control 1 (mouse)		IAGP	10	58,143,880	92,144,007	RGD:5509061	MGI
telencephalon hypoplasia
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	B9d1	B9 protein domain 1		IAGP	11	61,318,674	61,326,429	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Intu	inturned planar cell polarity effector homolog (Drosophila)		IAGP	3	40,457,623	40,508,662	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Mdm4	transformed mouse 3T3 cell double minute 4		IAGP	1	134,886,422	134,921,925	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Sp8	trans-acting transcription factor 8		IAGP	12	120,084,802	120,091,051	RGD:5509061	MGI

Term paths to the root

Path 1
Term	Annotations
mammalian phenotype	190938
nervous system phenotype	20585
abnormal nervous system morphology	15496
abnormal brain morphology	7382
abnormal brain copper level +	10
abnormal brain development +	1638
abnormal brain interneuron morphology	36
abnormal brain iron level	7
abnormal brain size +	302
abnormal brain vasculature morphology +	53
abnormal brain ventricle/choroid plexus morphology +	562
abnormal brain white matter morphology +	395
abnormal brainstem morphology +	419
abnormal forebrain morphology +	3248
abnormal hindbrain morphology +	1813
abnormal midbrain morphology +	279
abnormal postnatal subventricular zone morphology +	36
brain vacuoles	26
cerebral amyloid angiopathy	4
neurofibrillary tangles	7
tau protein deposits	7