abnormal forebrain morphology - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS

Term:	abnormal forebrain morphology	go back to main search page
Accession:	MP:0000783	browse the term
Definition:	any structural anomaly of the part of the brain developed from the most rostral of the three primary vesicles of the embryonic neural tube from which the diencephalon and telencephalon are derived
Synonyms:	exact_synonym:	abnormal forebrain; forebrain dysplasia

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abnormal forebrain morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Acvr1b	activin A receptor, type 1B		IAGP	15	101,004,556	101,043,032	RGD:5509061	MGI
G	Alx1	ALX homeobox 1		IAGP	10	102,470,481	102,491,411	RGD:5509061	MGI
G	Ap3b1	adaptor-related protein complex 3, beta 1 subunit		IAGP	13	95,128,915	95,336,271	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Bmp4	bone morphogenetic protein 4		IAGP	14	47,003,195	47,010,274	RGD:5509061	MGI
G	Boc	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein		IAGP	16	44,485,158	44,558,983	RGD:5509061	MGI
G	Brsk1	BR serine/threonine kinase 1		IAGP	7	4,642,530	4,667,599	RGD:5509061	MGI
G	Brsk2	BR serine/threonine kinase 2		IAGP	7	149,135,656	149,190,149	RGD:5509061	MGI
G	Casp3	caspase 3		IAGP	8	47,702,803	47,724,071	RGD:5509061	MGI
G	Cckar	cholecystokinin A receptor		IAGP	5	54,089,724	54,098,943	RGD:5509061	MGI
G	Cdon	cell adhesion molecule-related/down-regulated by oncogenes		IAGP	9	35,259,661	35,315,237	RGD:5509061	MGI
G	Cdon	cell adhesion molecule-related/down-regulated by oncogenes		IAGP	9	35,259,661	35,315,237	RGD:5509061	MGI
G	Cenpa	centromere protein A		IAGP	5	30,969,275	30,977,199	RGD:5509061	MGI
G	Chrd	chordin		IAGP	16	20,733,200	20,742,457	RGD:5509061	MGI
G	Col2a1	collagen, type II, alpha 1		IAGP	15	97,806,033	97,835,155	RGD:5509061	MGI
G	Crebbp	CREB binding protein		IAGP	16	4,084,048	4,213,404	RGD:5509061	MGI
G	Csf1	colony stimulating factor 1 (macrophage)		IAGP	3	107,543,966	107,563,387	RGD:5509061	MGI
G	Disp1	dispatched homolog 1 (Drosophila)		IAGP				RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Dlg4	discs, large homolog 4 (Drosophila)		IAGP	11	69,832,107	69,859,034	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Erbb3	v-erb-b2 erythroblastic leukemia viral oncogene homolog 3 (avian)		IAGP	10	128,006,424	128,026,557	RGD:5509061	MGI
G	Folr1	folate receptor 1 (adult)		IAGP	7	109,006,845	109,019,197	RGD:5509061	MGI
G	Foxa2	forkhead box A2		IAGP	2	147,868,614	147,872,705	RGD:5509061	MGI
G	Foxa2	forkhead box A2		IAGP	2	147,868,614	147,872,705	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IAGP	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxd1	forkhead box D1		IAGP	13	99,124,200	99,126,660	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Galc	galactosylceramidase		IAGP	12	99,440,510	99,497,547	RGD:5509061	MGI
G	Gdf1	growth differentiation factor 1		IAGP	8	72,839,674	72,855,487	RGD:5509061	MGI
G	Gdf7	growth differentiation factor 7		IAGP	12	8,304,724	8,308,760	RGD:5509061	MGI
G	Gdf7	growth differentiation factor 7		IAGP	12	8,304,724	8,308,760	RGD:5509061	MGI
G	Gsc	goosecoid homeobox		IAGP	12	105,709,419	105,711,446	RGD:5509061	MGI
G	Gsc	goosecoid homeobox		IAGP	12	105,709,419	105,711,446	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Hes1	hairy and enhancer of split 1 (Drosophila)		IAGP	16	30,065,443	30,067,882	RGD:5509061	MGI
G	Hes5	hairy and enhancer of split 5 (Drosophila)		IAGP	4	154,335,032	154,336,480	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hhex	hematopoietically expressed homeobox		IAGP	19	37,509,331	37,515,221	RGD:5509061	MGI
G	Hira	histone cell cycle regulation defective homolog A (S. cerevisiae)		IAGP	16	18,876,843	18,970,402	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Jun	Jun oncogene		IAGP	4	94,715,727	94,718,913	RGD:5509061	MGI
G	Kif2a	kinesin family member 2A		IAGP	13	107,750,665	107,812,194	RGD:5509061	MGI
G	Kifap3	kinesin-associated protein 3		IAGP	1	165,709,810	165,847,231	RGD:5509061	MGI
G	Lamp1	lysosomal-associated membrane protein 1		IAGP	8	13,159,135	13,175,338	RGD:5509061	MGI
G	Lamp2	lysosomal-associated membrane protein 2		IAGP	X	35,758,241	35,809,632	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Lmnb2	lamin B2		IAGP	10	80,364,108	80,380,990	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Lrp5	low density lipoprotein receptor-related protein 5		IAGP	19	3,584,825	3,686,564	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Lynx1	Ly6/neurotoxin 1		IAGP	15	74,578,286	74,583,409	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Mecom	MDS1 and EVI1 complex locus		IAGP	3	29,850,218	30,408,409	RGD:5509061	MGI
G	Mtor	mechanistic target of rapamycin (serine/threonine kinase)		IAGP	4	147,822,691	147,931,794	RGD:5509061	MGI
G	Napa	N-ethylmaleimide sensitive fusion protein attachment protein alpha		IAGP	7	16,683,992	16,703,324	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Ndst3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3		IAGP	3	123,229,084	123,375,310	RGD:5509061	MGI
G	Neurog2	neurogenin 2		IAGP	3	127,336,063	127,338,549	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nkx2-1	NK2 homeobox 1		IAGP	12	57,632,922	57,637,895	RGD:5509061	MGI
G	Nodal	nodal		IAGP	10	60,880,720	60,888,085	RGD:5509061	MGI
G	Nodal	nodal		IAGP	10	60,880,720	60,888,085	RGD:5509061	MGI
G	Nog	noggin		IAGP	11	89,161,952	89,163,873	RGD:5509061	MGI
G	Nsdhl	NAD(P) dependent steroid dehydrogenase-like		IAGP	X	70,163,860	70,203,867	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Pax3	paired box gene 3		IAGP	1	78,097,842	78,193,711	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pdpk1	3-phosphoinositide dependent protein kinase 1		IAGP	17	24,210,647	24,278,561	RGD:5509061	MGI
G	Pdpk1	3-phosphoinositide dependent protein kinase 1		IAGP	17	24,210,647	24,278,561	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Pou3f2	POU domain, class 3, transcription factor 2		IAGP	4	22,413,941	22,415,278	RGD:5509061	MGI
G	Pou3f3	POU domain, class 3, transcription factor 3		IAGP	1	42,753,991	42,757,055	RGD:5509061	MGI
G	Psap	prosaposin		IAGP	10	59,740,376	59,765,348	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen2	presenilin 2		IAGP	1	182,157,135	182,186,431	RGD:5509061	MGI
G	Rasa1	RAS p21 protein activator 1		IAGP	13	85,354,304	85,429,091	RGD:5509061	MGI
G	Rax	retina and anterior neural fold homeobox		IAGP	18	66,094,293	66,098,743	RGD:5509061	MGI
G	Rdh10	retinol dehydrogenase 10 (all-trans)		IAGP	1	16,095,963	16,122,631	RGD:5509061	MGI
G	Rest	RE1-silencing transcription factor		IAGP	5	77,694,519	77,712,722	RGD:5509061	MGI
G	Rpgrip1l	Rpgrip1-like		IAGP	8	93,740,929	93,837,121	RGD:5509061	MGI
G	S1pr1	sphingosine-1-phosphate receptor 1		IAGP	3	115,413,351	115,417,973	RGD:5509061	MGI
G	Scube1	signal peptide, CUB domain, EGF-like 1		IAGP	15	83,433,013	83,555,451	RGD:5509061	MGI
G	Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A		IAGP	18	47,404,908	47,528,522	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Ski	ski sarcoma viral oncogene homolog (avian)		IAGP	4	154,528,184	154,596,644	RGD:5509061	MGI
G	Smad1	SMAD family member 1		IAGP	8	81,862,294	81,923,367	RGD:5509061	MGI
G	Smad5	SMAD family member 5		IAGP	13	56,804,371	56,843,739	RGD:5509061	MGI
G	Smad5	SMAD family member 5		IAGP	13	56,804,371	56,843,739	RGD:5509061	MGI
G	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1		IAGP	9	110,034,528	110,142,682	RGD:5509061	MGI
G	Smo	smoothened homolog (Drosophila)		IAGP	6	29,685,497	29,711,366	RGD:5509061	MGI
G	Sod2	superoxide dismutase 2, mitochondrial		IAGP	17	13,200,705	13,210,985	RGD:5509061	MGI
G	Ss18l1	synovial sarcoma translocation gene on chromosome 18-like 1		IAGP	2	179,777,188	179,804,906	RGD:5509061	MGI
G	Tbr1	T-box brain gene 1		IAGP	2	61,642,510	61,652,171	RGD:5509061	MGI
G	Tcof1	Treacher Collins Franceschetti syndrome 1, homolog		IAGP	18	60,974,196	61,008,562	RGD:5509061	MGI
G	Tctn1	tectonic family member 1		IAGP	5	122,691,524	122,714,469	RGD:5509061	MGI
G	Tdgf1	teratocarcinoma-derived growth factor 1		IAGP	9	110,842,112	110,848,662	RGD:5509061	MGI
G	Tfap2a	transcription factor AP-2, alpha		IAGP	13	40,811,044	40,829,192	RGD:5509061	MGI
G	Tiam1	T cell lymphoma invasion and metastasis 1		IAGP	16	89,787,356	89,974,944	RGD:5509061	MGI
G	Tulp3	tubby-like protein 3		IAGP	6	128,271,179	128,305,869	RGD:5509061	MGI
G	Twsg1	twisted gastrulation homolog 1 (Drosophila)		IAGP	17	66,272,405	66,300,527	RGD:5509061	MGI
G	Tyro3	TYRO3 protein tyrosine kinase 3		IAGP	2	119,625,250	119,643,840	RGD:5509061	MGI
G	Vac14	Vac14 homolog (S. cerevisiae)		IAGP	8	113,142,538	113,244,298	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IEA	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Wls	wntless homolog (Drosophila)		IAGP	3	159,502,659	159,598,042	RGD:5509061	MGI
G	Wnt1	wingless-related MMTV integration site 1		IAGP	15	98,620,288	98,624,261	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic3	zinc finger protein of the cerebellum 3		IAGP	X	55,283,805	55,289,807	RGD:5509061	MGI
Q	Fbrwt1_m	forebrain weight 1 (mouse)		IAGP				RGD:5509061	MGI
Q	Fbrwt2_m	forebrain weight 2 (mouse)		IAGP				RGD:5509061	MGI
abnormal Ammon gyrus morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atp7a	ATPase, Cu++ transporting, alpha polypeptide		IAGP	X	103,222,615	103,323,499	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Gak	cyclin G associated kinase		IAGP	5	108,998,433	109,058,758	RGD:5509061	MGI
G	Lhx5	LIM homeobox protein 5		IAGP	5	120,881,895	120,891,466	RGD:5509061	MGI
G	Manba	mannosidase, beta A, lysosomal		IAGP	3	135,148,575	135,234,368	RGD:5509061	MGI
G	Mt3	metallothionein 3		IAGP	8	96,676,507	96,678,048	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Plxna3	plexin A3		IAGP	X	71,574,405	71,590,028	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
abnormal dentate gyrus morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	4930444A02Rik	RIKEN cDNA 4930444A02 gene		IAGP	8	27,091,076	27,104,593	RGD:5509061	MGI
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Apbb1	amyloid beta (A4) precursor protein-binding, family B, member 1		IAGP	7	112,706,998	112,730,049	RGD:5509061	MGI
G	Apbb2	amyloid beta (A4) precursor protein-binding, family B, member 2		IAGP	5	66,693,127	67,009,910	RGD:5509061	MGI
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Ccdc88a	coiled coil domain containing 88A		IAGP	11	29,273,775	29,410,812	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Cdk5r2	cyclin-dependent kinase 5, regulatory subunit 2 (p39)		IAGP	1	74,901,603	74,904,306	RGD:5509061	MGI
G	Cit	citron		IAGP	5	116,295,665	116,456,352	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Crk	v-crk sarcoma virus CT10 oncogene homolog (avian)		IAGP	11	75,492,812	75,519,594	RGD:5509061	MGI
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		IAGP	16	17,452,080	17,486,348	RGD:5509061	MGI
G	Cspg4	chondroitin sulfate proteoglycan 4		IAGP	9	56,712,911	56,747,677	RGD:5509061	MGI
G	Cxcr4	chemokine (C-X-C motif) receptor 4		IAGP	1	130,484,776	130,488,876	RGD:5509061	MGI
G	Cxcr4	chemokine (C-X-C motif) receptor 4		IAGP	1	130,484,776	130,488,876	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dffa	DNA fragmentation factor, alpha subunit		IAGP	4	148,478,262	148,494,759	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Eno2	enolase 2, gamma neuronal		IAGP	6	124,710,073	124,719,527	RGD:5509061	MGI
G	Eomes	eomesodermin homolog (Xenopus laevis)		IAGP	9	118,387,307	118,395,250	RGD:5509061	MGI
G	Fabp7	fatty acid binding protein 7, brain		IAGP	10	57,504,729	57,508,256	RGD:5509061	MGI
G	Fezf1	Fez family zinc finger 1		IAGP	6	23,195,047	23,198,264	RGD:5509061	MGI
G	Fezf2	Fez family zinc finger 2		IAGP	14	13,174,406	13,178,379	RGD:5509061	MGI
G	Fgf13	fibroblast growth factor 13		IAGP	X	56,315,327	56,387,613	RGD:5509061	MGI
G	Fkrp	fukutin related protein		IAGP	7	17,394,616	17,402,081	RGD:5509061	MGI
G	Fmr1	fragile X mental retardation syndrome 1		IAGP	X	65,931,730	65,971,138	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fshr	follicle stimulating hormone receptor		IAGP	17	89,384,292	89,600,015	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fzd9	frizzled homolog 9 (Drosophila)		IAGP	5	135,724,808	135,726,917	RGD:5509061	MGI
G	Gak	cyclin G associated kinase		IAGP	5	108,998,433	109,058,758	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Gja1	gap junction protein, alpha 1		IAGP	10	56,097,106	56,110,225	RGD:5509061	MGI
G	Hdac2	histone deacetylase 2		IAGP	10	36,694,350	36,721,694	RGD:5509061	MGI
G	Huwe1	HECT, UBA and WWE domain containing 1		IAGP	X	148,237,825	148,369,960	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Kmt2a	lysine (K)-specific methyltransferase 2A		IAGP	9	44,611,438	44,689,357	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Macf1	microtubule-actin crosslinking factor 1		IAGP	4	123,026,959	123,361,603	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Mbd1	methyl-CpG binding domain protein 1		IAGP	18	74,427,942	74,442,338	RGD:5509061	MGI
G	Mdk	midkine		IAGP	2	91,769,978	91,772,439	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mkl1	MKL (megakaryoblastic leukemia)/myocardin-like 1		IAGP	15	80,842,711	81,021,187	RGD:5509061	MGI
G	Mkl2	MKL/myocardin-like 2		IAGP	16	13,256,574	13,417,622	RGD:5509061	MGI
G	Ncdn	neurochondrin		IAGP	4	126,420,994	126,430,673	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurog2	neurogenin 2		IAGP	3	127,336,063	127,338,549	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Nos3	nitric oxide synthase 3, endothelial cell		IAGP	5	23,870,637	23,890,292	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase		IAGP	4	115,823,123	115,832,449	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Pou1f1	POU domain, class 1, transcription factor 1		IAGP	16	65,520,964	65,534,316	RGD:5509061	MGI
G	Prkab1	protein kinase, AMP-activated, beta 1 non-catalytic subunit		IAGP	5	116,463,599	116,474,437	RGD:5509061	MGI
G	Prox1	prospero-related homeobox 1		IAGP	1	191,945,654	191,994,559	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psmg1	proteasome (prosome, macropain) assembly chaperone 1		IAGP	16	96,201,542	96,212,510	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Slc2a8	solute carrier family 2, (facilitated glucose transporter), member 8		IAGP	2	32,828,509	32,837,576	RGD:5509061	MGI
G	Sox1	SRY-box containing gene 1		IAGP	8	12,395,519	12,399,555	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Sp4	trans-acting transcription factor 4		IAGP	12	119,473,406	119,539,913	RGD:5509061	MGI
G	Tlr3	toll-like receptor 3		IAGP	8	46,481,019	46,495,893	RGD:5509061	MGI
G	Trio	triple functional domain (PTPRF interacting)		IAGP	15	27,660,404	27,955,603	RGD:5509061	MGI
G	Trio	triple functional domain (PTPRF interacting)		IAGP	15	27,660,404	27,955,603	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
G	Usp14	ubiquitin specific peptidase 14		IAGP	18	9,993,613	10,030,147	RGD:5509061	MGI
G	Vim	vimentin		IAGP	2	13,495,938	13,504,453	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
Q	Hipp3_m	hippocampal weight 3 (mouse)		IAGP	13	30,811,017	64,811,164	RGD:5509061	MGI
Q	Hipp5_m	hippocampal weight 5 (mouse)		IAGP	11	844,334	34,844,436	RGD:5509061	MGI
abnormal hippocampal fimbria morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Cers2	ceramide synthase 2		IAGP	3	95,119,174	95,127,492	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Nfib	nuclear factor I/B		IAGP	4	81,936,077	82,151,212	RGD:5509061	MGI
abnormal hippocampal fornix morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
abnormal hippocampal mossy fiber morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Cacng2	calcium channel, voltage-dependent, gamma subunit 2		IAGP	15	77,824,053	77,949,710	RGD:5509061	MGI
G	Chl1	cell adhesion molecule with homology to L1CAM		IAGP	6	103,460,870	103,683,029	RGD:5509061	MGI
G	Ckb	creatine kinase, brain		IAGP	12	112,907,566	112,910,549	RGD:5509061	MGI
G	Ckb	creatine kinase, brain		IAGP	12	112,907,566	112,910,549	RGD:5509061	MGI
G	Ckmt1	creatine kinase, mitochondrial 1, ubiquitous		IAGP	2	121,184,377	121,189,473	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Fmr1	fragile X mental retardation syndrome 1		IAGP	X	65,931,730	65,971,138	RGD:5509061	MGI
G	Gdi1	guanosine diphosphate (GDP) dissociation inhibitor 1		IAGP	X	71,550,351	71,557,206	RGD:5509061	MGI
G	Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6		IAGP	16	94,970,290	95,219,303	RGD:5509061	MGI
G	Lgi1	leucine-rich repeat LGI family, member 1		IAGP	19	38,339,272	38,383,429	RGD:5509061	MGI
G	Lyst	lysosomal trafficking regulator		IAGP	13	13,682,676	13,869,707	RGD:5509061	MGI
G	Mt3	metallothionein 3		IAGP	8	96,676,507	96,678,048	RGD:5509061	MGI
G	Ncdn	neurochondrin		IAGP	4	126,420,994	126,430,673	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Nr3c2	nuclear receptor subfamily 3, group C, member 2		IAGP	8	79,426,407	79,767,538	RGD:5509061	MGI
G	Nrp2	neuropilin 2		IAGP	1	62,749,891	62,865,266	RGD:5509061	MGI
G	Olig3	oligodendrocyte transcription factor 3		IAGP	10	19,076,345	19,078,410	RGD:5509061	MGI
G	Pde6b	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide		IAGP	5	108,817,392	108,860,762	RGD:5509061	MGI
G	Plxna2	plexin A2		IAGP	1	196,446,023	196,643,063	RGD:5509061	MGI
G	Plxna2	plexin A2		IAGP	1	196,446,023	196,643,063	RGD:5509061	MGI
G	Plxna3	plexin A3		IAGP	X	71,574,405	71,590,028	RGD:5509061	MGI
G	Plxna3	plexin A3		IAGP	X	71,574,405	71,590,028	RGD:5509061	MGI
G	Plxna4	plexin A4		IAGP	6	32,094,543	32,538,192	RGD:5509061	MGI
G	Plxna4	plexin A4		IAGP	6	32,094,543	32,538,192	RGD:5509061	MGI
G	Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform		IAGP	3	136,333,734	136,598,743	RGD:5509061	MGI
G	Sema6a	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A		IAGP	18	47,404,908	47,528,522	RGD:5509061	MGI
G	Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B		IAGP	17	56,262,508	56,279,766	RGD:5509061	MGI
G	Sh3gl1	SH3-domain GRB2-like 1		IAGP	17	56,156,173	56,175,999	RGD:5509061	MGI
G	Sh3gl2	SH3-domain GRB2-like 2		IAGP	4	84,851,360	85,035,284	RGD:5509061	MGI
G	Slc30a3	solute carrier family 30 (zinc transporter), member 3		IAGP	5	31,388,479	31,395,900	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
abnormal hippocampus CA1 region morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Agtr2	angiotensin II receptor, type 2		IAGP	X	21,061,752	21,065,957	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Dag1	dystroglycan 1		IAGP	9	108,108,289	108,166,067	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dpysl4	dihydropyrimidinase-like 4		IAGP	7	146,271,900	146,287,694	RGD:5509061	MGI
G	Gabra5	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5		IAGP	7	64,663,039	64,765,379	RGD:5509061	MGI
G	Hdac2	histone deacetylase 2		IAGP	10	36,694,350	36,721,694	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Mllt4	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4		IAGP	17	13,897,548	14,042,801	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Rgs2	regulator of G-protein signaling 2		IAGP	1	145,846,468	145,851,279	RGD:5509061	MGI
G	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2		IAGP	2	102,498,840	102,630,941	RGD:5509061	MGI
G	Tlr3	toll-like receptor 3		IAGP	8	46,481,019	46,495,893	RGD:5509061	MGI
G	Tnr	tenascin R		IAGP	1	161,453,900	161,855,053	RGD:5509061	MGI
G	Trib2	tribbles homolog 2 (Drosophila)		IAGP	12	15,798,533	15,823,591	RGD:5509061	MGI
abnormal hippocampus CA2 region morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agtr2	angiotensin II receptor, type 2		IAGP	X	21,061,752	21,065,957	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
abnormal hippocampus CA3 region morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agtr2	angiotensin II receptor, type 2		IAGP	X	21,061,752	21,065,957	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Fezf1	Fez family zinc finger 1		IAGP	6	23,195,047	23,198,264	RGD:5509061	MGI
G	Fezf2	Fez family zinc finger 2		IAGP	14	13,174,406	13,178,379	RGD:5509061	MGI
G	Gdi1	guanosine diphosphate (GDP) dissociation inhibitor 1		IAGP	X	71,550,351	71,557,206	RGD:5509061	MGI
G	Gpx4	glutathione peroxidase 4		IAGP	10	79,516,255	79,519,184	RGD:5509061	MGI
G	Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)		IAGP	3	80,488,858	80,606,713	RGD:5509061	MGI
G	Lmx1a	LIM homeobox transcription factor 1 alpha		IAGP	1	169,619,689	169,778,864	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Ncam1	neural cell adhesion molecule 1		IAGP	9	49,310,243	49,607,174	RGD:5509061	MGI
G	Nos2	nitric oxide synthase 2, inducible		IAGP	11	78,734,361	78,773,626	RGD:5509061	MGI
G	Npc1	Niemann Pick type C1		IAGP	18	12,348,203	12,394,895	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Snap25	synaptosomal-associated protein 25		IAGP	2	136,539,186	136,608,164	RGD:5509061	MGI
G	Ss18l1	synovial sarcoma translocation gene on chromosome 18-like 1		IAGP	2	179,777,188	179,804,906	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Vps18	vacuolar protein sorting 18 (yeast)		IAGP	2	119,114,478	119,124,189	RGD:5509061	MGI
abnormal hippocampus CA4 region morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Prox1	prospero-related homeobox 1		IAGP	1	191,945,654	191,994,559	RGD:5509061	MGI
abnormal hippocampus development
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Chn2	chimerin (chimaerin) 2		IAGP	6	53,989,926	54,251,806	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx5	LIM homeobox protein 5		IAGP	5	120,881,895	120,891,466	RGD:5509061	MGI
G	Lmx1a	LIM homeobox transcription factor 1 alpha		IAGP	1	169,619,689	169,778,864	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Mbd1	methyl-CpG binding domain protein 1		IAGP	18	74,427,942	74,442,338	RGD:5509061	MGI
G	Mdk	midkine		IAGP	2	91,769,978	91,772,439	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Nfib	nuclear factor I/B		IAGP	4	81,936,077	82,151,212	RGD:5509061	MGI
G	Nr4a3	nuclear receptor subfamily 4, group A, member 3		IAGP	4	48,064,120	48,096,224	RGD:5509061	MGI
G	Nrp2	neuropilin 2		IAGP	1	62,749,891	62,865,266	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Sema3f	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F		IAGP	9	107,583,833	107,612,806	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Tlr3	toll-like receptor 3		IAGP	8	46,481,019	46,495,893	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Zbtb20	zinc finger and BTB domain containing 20		IAGP	16	43,247,397	43,619,241	RGD:5509061	MGI
G	Zic5	zinc finger protein of the cerebellum 5		IAGP	14	122,858,382	122,864,880	RGD:5509061	MGI
abnormal hippocampus granule cell layer
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agt	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)		IAGP	8	127,080,487	127,093,607	RGD:5509061	MGI
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Dag1	dystroglycan 1		IAGP	9	108,108,289	108,166,067	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
G	Psap	prosaposin		IAGP	10	59,740,376	59,765,348	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Top2b	topoisomerase (DNA) II beta		IAGP	14	17,197,720	17,263,301	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
abnormal hippocampus granule cell morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	A930011O12Rik	RIKEN cDNA A930011O12 gene		IAGP				RGD:5509061	MGI
G	Mir124a-1	microRNA 124a-1		IAGP	14	65,209,494	65,209,578	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Prox1	prospero-related homeobox 1		IAGP	1	191,945,654	191,994,559	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
abnormal hippocampus layer morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Cdk5	cyclin-dependent kinase 5		IAGP	5	23,924,060	23,929,348	RGD:5509061	MGI
G	Cdk5r2	cyclin-dependent kinase 5, regulatory subunit 2 (p39)		IAGP	1	74,901,603	74,904,306	RGD:5509061	MGI
G	Crmp1	collapsin response mediator protein 1		IAGP	5	37,633,319	37,683,372	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Kif2a	kinesin family member 2A		IAGP	13	107,750,665	107,812,194	RGD:5509061	MGI
G	Lmnb2	lamin B2		IAGP	10	80,364,108	80,380,990	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map2	microtubule-associated protein 2		IAGP	1	66,221,903	66,489,157	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pomt2	protein-O-mannosyltransferase 2		IAGP	12	88,447,816	88,488,852	RGD:5509061	MGI
G	Ppp1r9b	protein phosphatase 1, regulatory subunit 9B		IAGP	11	94,852,526	94,868,212	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Reln	reelin		IEA	5	21,390,272	21,850,523	RGD:5509061	MGI
abnormal hippocampus molecular cell layer
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen2	presenilin 2		IAGP	1	182,157,135	182,186,431	RGD:5509061	MGI
abnormal hippocampus morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Ap3m2	adaptor-related protein complex 3, mu 2 subunit		IAGP	8	23,897,826	23,916,126	RGD:5509061	MGI
G	Apoe	apolipoprotein E		IAGP	7	20,281,593	20,284,515	RGD:5509061	MGI
G	Atg5	autophagy related 5		IAGP	10	43,988,164	44,084,097	RGD:5509061	MGI
G	Bad	BCL2-associated agonist of cell death		IAGP	19	7,016,345	7,026,383	RGD:5509061	MGI
G	Basp1	brain abundant, membrane attached signal protein 1		IAGP	15	25,293,032	25,343,519	RGD:5509061	MGI
G	Bcan	brevican		IAGP	3	87,791,453	87,804,278	RGD:5509061	MGI
G	Bcl2l11	BCL2-like 11 (apoptosis facilitator)		IAGP	2	127,951,774	127,988,283	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Bid	BH3 interacting domain death agonist		IAGP	6	120,843,137	120,866,838	RGD:5509061	MGI
G	Brsk1	BR serine/threonine kinase 1		IAGP	7	4,642,530	4,667,599	RGD:5509061	MGI
G	Brsk2	BR serine/threonine kinase 2		IAGP	7	149,135,656	149,190,149	RGD:5509061	MGI
G	Cadm1	cell adhesion molecule 1		IAGP	9	47,338,435	47,661,468	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Cdkn1b	cyclin-dependent kinase inhibitor 1B		IAGP	6	134,870,419	134,875,543	RGD:5509061	MGI
G	Cit	citron		IAGP	5	116,295,665	116,456,352	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Col4a1	collagen, type IV, alpha 1		IAGP	8	11,198,423	11,312,826	RGD:5509061	MGI
G	Crk	v-crk sarcoma virus CT10 oncogene homolog (avian)		IAGP	11	75,492,812	75,519,594	RGD:5509061	MGI
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		IAGP	16	17,452,080	17,486,348	RGD:5509061	MGI
G	Cryab	crystallin, alpha B		IAGP	9	50,560,863	50,564,738	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Drd1a	dopamine receptor D1A		IAGP	13	54,146,552	54,151,027	RGD:5509061	MGI
G	Dyrk1a	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a		IAGP	16	94,791,813	94,917,126	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Fabp7	fatty acid binding protein 7, brain		IAGP	10	57,504,729	57,508,256	RGD:5509061	MGI
G	Fgf13	fibroblast growth factor 13		IAGP	X	56,315,327	56,387,613	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IAGP	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Gal	galanin		IAGP	19	3,409,917	3,414,457	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Gja1	gap junction protein, alpha 1		IAGP	10	56,097,106	56,110,225	RGD:5509061	MGI
G	Hsd11b1	hydroxysteroid 11-beta dehydrogenase 1		IAGP	1	195,047,834	195,090,239	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Hspb2	heat shock protein 2		IAGP	9	50,559,177	50,560,459	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Idua	iduronidase, alpha-L-		IAGP	5	109,098,125	109,113,577	RGD:5509061	MGI
G	Kcnq3	potassium voltage-gated channel, subfamily Q, member 3		IAGP	15	65,826,477	66,117,786	RGD:5509061	MGI
G	Kif1b	kinesin family member 1B		IAGP	4	148,550,430	148,681,807	RGD:5509061	MGI
G	Klk8	kallikrein related-peptidase 8		IAGP	7	51,052,947	51,059,192	RGD:5509061	MGI
G	L1cam	L1 cell adhesion molecule		IAGP	X	71,099,119	71,126,173	RGD:5509061	MGI
G	Ldlr	low density lipoprotein receptor		IAGP	9	21,528,038	21,554,363	RGD:5509061	MGI
G	Lhx6	LIM homeobox protein 6		IAGP	2	35,937,473	35,960,928	RGD:5509061	MGI
G	Limk1	LIM-domain containing, protein kinase		IAGP	5	135,131,909	135,164,460	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Man2b1	mannosidase 2, alpha B1		IAGP	8	87,607,168	87,622,638	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Map2	microtubule-associated protein 2		IAGP	1	66,221,903	66,489,157	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mertk	c-mer proto-oncogene tyrosine kinase		IAGP	2	128,524,733	128,627,923	RGD:5509061	MGI
G	Mkl1	MKL (megakaryoblastic leukemia)/myocardin-like 1		IAGP	15	80,842,711	81,021,187	RGD:5509061	MGI
G	Mkl2	MKL/myocardin-like 2		IAGP	16	13,256,574	13,417,622	RGD:5509061	MGI
G	Mt3	metallothionein 3		IAGP	8	96,676,507	96,678,048	RGD:5509061	MGI
G	Mycbp2	MYC binding protein 2		IAGP	14	103,512,628	103,746,017	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Nf1	neurofibromatosis 1		IAGP	11	79,153,394	79,395,111	RGD:5509061	MGI
G	Nfia	nuclear factor I/A		IAGP	4	97,248,634	97,785,567	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Npas3	neuronal PAS domain protein 3		IAGP	12	54,349,664	55,173,162	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pex7	peroxisomal biogenesis factor 7		IAGP	10	19,579,896	19,627,480	RGD:5509061	MGI
G	Plxna3	plexin A3		IAGP	X	71,574,405	71,590,028	RGD:5509061	MGI
G	Pnpla6	patatin-like phospholipase domain containing 6		IAGP	8	3,515,384	3,544,267	RGD:5509061	MGI
G	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase		IAGP	4	115,823,123	115,832,449	RGD:5509061	MGI
G	Pou3f3	POU domain, class 3, transcription factor 3		IAGP	1	42,753,991	42,757,055	RGD:5509061	MGI
G	Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha		IAGP	5	51,845,488	51,945,160	RGD:5509061	MGI
G	Ppp1r9b	protein phosphatase 1, regulatory subunit 9B		IAGP	11	94,852,526	94,868,212	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Prkdc	protein kinase, DNA activated, catalytic polypeptide		IAGP	16	15,637,959	15,842,332	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Snca	synuclein, alpha		IAGP	6	60,681,567	60,779,849	RGD:5509061	MGI
G	Socs7	suppressor of cytokine signaling 7		IAGP	11	97,223,865	97,259,856	RGD:5509061	MGI
G	Sod2	superoxide dismutase 2, mitochondrial		IAGP	17	13,200,705	13,210,985	RGD:5509061	MGI
G	Sp4	trans-acting transcription factor 4		IAGP	12	119,473,406	119,539,913	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	Suz12	suppressor of zeste 12 homolog (Drosophila)		IAGP	11	79,806,608	79,847,625	RGD:5509061	MGI
G	Thra	thyroid hormone receptor alpha		IAGP	11	98,603,187	98,626,425	RGD:5509061	MGI
G	Top2b	topoisomerase (DNA) II beta		IAGP	14	17,197,720	17,263,301	RGD:5509061	MGI
G	Tph2	tryptophan hydroxylase 2		IAGP	10	114,515,697	114,622,078	RGD:5509061	MGI
G	Trib2	tribbles homolog 2 (Drosophila)		IAGP	12	15,798,533	15,823,591	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
G	Tyro3	TYRO3 protein tyrosine kinase 3		IAGP	2	119,625,250	119,643,840	RGD:5509061	MGI
G	Vac14	Vac14 homolog (S. cerevisiae)		IAGP	8	113,142,538	113,244,298	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
G	Vps18	vacuolar protein sorting 18 (yeast)		IAGP	2	119,114,478	119,124,189	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide		IAGP	11	75,546,389	75,579,343	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic3	zinc finger protein of the cerebellum 3		IAGP	X	55,283,805	55,289,807	RGD:5509061	MGI
G	Zic5	zinc finger protein of the cerebellum 5		IAGP	14	122,858,382	122,864,880	RGD:5509061	MGI
Q	Gbrln_m	granular brain lesions (mouse)		IAGP	7	48,754,442	82,754,587	RGD:5509061	MGI
abnormal hippocampus neuron morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arsg	arylsulfatase G		IAGP	11	109,334,688	109,434,644	RGD:5509061	MGI
G	Dgkb	diacylglycerol kinase, beta		IAGP	12	38,607,292	39,359,997	RGD:5509061	MGI
G	Mkl1	MKL (megakaryoblastic leukemia)/myocardin-like 1		IAGP	15	80,842,711	81,021,187	RGD:5509061	MGI
G	Mkl2	MKL/myocardin-like 2		IAGP	16	13,256,574	13,417,622	RGD:5509061	MGI
G	Nrp2	neuropilin 2		IAGP	1	62,749,891	62,865,266	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
abnormal hippocampus pyramidal cell layer
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Crk	v-crk sarcoma virus CT10 oncogene homolog (avian)		IAGP	11	75,492,812	75,519,594	RGD:5509061	MGI
G	Crkl	v-crk sarcoma virus CT10 oncogene homolog (avian)-like		IAGP	16	17,452,080	17,486,348	RGD:5509061	MGI
G	Ctsb	cathepsin B		IAGP	14	63,741,302	63,764,758	RGD:5509061	MGI
G	Ctsl	cathepsin L		IAGP	13	64,464,522	64,471,614	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dpysl4	dihydropyrimidinase-like 4		IAGP	7	146,271,900	146,287,694	RGD:5509061	MGI
G	Ei24	etoposide induced 2.4 mRNA		IAGP	9	36,586,740	36,604,653	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6		IAGP	16	94,970,290	95,219,303	RGD:5509061	MGI
G	Klk8	kallikrein related-peptidase 8		IAGP	7	51,052,947	51,059,192	RGD:5509061	MGI
G	Lmx1a	LIM homeobox transcription factor 1 alpha		IAGP	1	169,619,689	169,778,864	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Lyst	lysosomal trafficking regulator		IAGP	13	13,682,676	13,869,707	RGD:5509061	MGI
G	Macf1	microtubule-actin crosslinking factor 1		IAGP	4	123,026,959	123,361,603	RGD:5509061	MGI
G	Mkl1	MKL (megakaryoblastic leukemia)/myocardin-like 1		IAGP	15	80,842,711	81,021,187	RGD:5509061	MGI
G	Mkl2	MKL/myocardin-like 2		IAGP	16	13,256,574	13,417,622	RGD:5509061	MGI
G	Ncam1	neural cell adhesion molecule 1		IAGP	9	49,310,243	49,607,174	RGD:5509061	MGI
G	Nr4a3	nuclear receptor subfamily 4, group A, member 3		IAGP	4	48,064,120	48,096,224	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pou1f1	POU domain, class 1, transcription factor 1		IAGP	16	65,520,964	65,534,316	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Reln	reelin		IAGP	5	21,390,272	21,850,523	RGD:5509061	MGI
G	Tnr	tenascin R		IAGP	1	161,453,900	161,855,053	RGD:5509061	MGI
G	Top2b	topoisomerase (DNA) II beta		IAGP	14	17,197,720	17,263,301	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
G	Ywhae	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide		IAGP	11	75,546,389	75,579,343	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
abnormal hippocampus pyramidal cell morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Abi2	abl-interactor 2		IAGP	1	60,466,642	60,538,002	RGD:5509061	MGI
G	Atp1a3	ATPase, Na+/K+ transporting, alpha 3 polypeptide		IAGP	7	25,763,186	25,790,914	RGD:5509061	MGI
G	C1qa	complement component 1, q subcomponent, alpha polypeptide		IAGP	4	136,451,831	136,454,759	RGD:5509061	MGI
G	Cacng8	calcium channel, voltage-dependent, gamma subunit 8		IAGP	7	3,394,459	3,415,366	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Cln3	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)		IAGP	7	133,714,914	133,727,794	RGD:5509061	MGI
G	Crmp1	collapsin response mediator protein 1		IAGP	5	37,633,319	37,683,372	RGD:5509061	MGI
G	Dab1	disabled 1		IAGP	4	103,291,964	103,851,531	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dlg4	discs, large homolog 4 (Drosophila)		IAGP	11	69,832,107	69,859,034	RGD:5509061	MGI
G	Dpysl4	dihydropyrimidinase-like 4		IAGP	7	146,271,900	146,287,694	RGD:5509061	MGI
G	Efna3	ephrin A3		IAGP	3	89,118,873	89,126,801	RGD:5509061	MGI
G	Ehmt1	euchromatic histone methyltransferase 1		IAGP	2	24,646,293	24,742,591	RGD:5509061	MGI
G	Fmr1	fragile X mental retardation syndrome 1		IAGP	X	65,931,730	65,971,138	RGD:5509061	MGI
G	Fus	fused in sarcoma		IAGP	7	135,110,993	135,125,546	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Hdac2	histone deacetylase 2		IAGP	10	36,694,350	36,721,694	RGD:5509061	MGI
G	Hgs	HGF-regulated tyrosine kinase substrate		IAGP	11	120,328,949	120,345,298	RGD:5509061	MGI
G	Kalrn	kalirin, RhoGEF kinase		IAGP	16	33,969,159	34,514,113	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Klk8	kallikrein related-peptidase 8		IAGP	7	51,052,947	51,059,192	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
G	Mecp2	methyl CpG binding protein 2		IAGP	X	71,272,160	71,330,975	RGD:5509061	MGI
G	Mllt4	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4		IAGP	17	13,897,548	14,042,801	RGD:5509061	MGI
G	Ndel1	nuclear distribution gene E-like homolog 1 (A. nidulans)		IAGP	11	68,634,936	68,666,633	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
G	Pou1f1	POU domain, class 1, transcription factor 1		IAGP	16	65,520,964	65,534,316	RGD:5509061	MGI
G	Shank1	SH3/ankyrin domain gene 1		IAGP	7	51,565,634	51,613,723	RGD:5509061	MGI
G	Syn1	synapsin I		IAGP	X	20,437,637	20,498,044	RGD:5509061	MGI
G	Syngap1	synaptic Ras GTPase activating protein 1 homolog (rat)		IAGP	17	27,078,397	27,107,590	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
G	Tsc2	tuberous sclerosis 2		IAGP	17	24,732,882	24,769,574	RGD:5509061	MGI
G	Usp14	ubiquitin specific peptidase 14		IAGP	18	9,993,613	10,030,147	RGD:5509061	MGI
abnormal hippocampus region morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Tsc1	tuberous sclerosis 1		IAGP	2	28,496,763	28,546,687	RGD:5509061	MGI
abnormal hippocampus size
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
Q	Vnhv1_m	ventral hippocampal volume 1 (mouse)		IAGP				RGD:5509061	MGI
Q	Vnhv2_m	ventral hippocampal volume 2 (mouse)		IAGP				RGD:5509061	MGI
abnormal hippocampus stratum lacunosum morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pura	purine rich element binding protein A		IAGP	18	36,440,816	36,447,899	RGD:5509061	MGI
abnormal lateral ventricle morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	Casp9	caspase 9		IAGP	4	141,349,527	141,371,890	RGD:5509061	MGI
G	Casp9	caspase 9		IAGP	4	141,349,527	141,371,890	RGD:5509061	MGI
G	Ctnna1	catenin (cadherin associated protein), alpha 1		IAGP	18	35,278,566	35,414,429	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IEA	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Gpr124	G protein-coupled receptor 124		IAGP	8	28,196,313	28,233,894	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Hydin	HYDIN, axonemal central pair apparatus protein		IEA	8	112,790,877	113,134,153	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Lrp8	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor		IAGP	4	107,474,864	107,549,445	RGD:5509061	MGI
G	Macf1	microtubule-actin crosslinking factor 1		IAGP	4	123,026,959	123,361,603	RGD:5509061	MGI
G	Nr1h2	nuclear receptor subfamily 1, group H, member 2		IAGP	7	51,805,002	51,809,293	RGD:5509061	MGI
G	Nr1h3	nuclear receptor subfamily 1, group H, member 3		IAGP	2	91,024,218	91,035,273	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Pax3	paired box gene 3		IAGP	1	78,097,842	78,193,711	RGD:5509061	MGI
G	Scrib	scribbled homolog (Drosophila)		IAGP	15	75,877,616	75,900,160	RGD:5509061	MGI
G	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1		IAGP	9	110,034,528	110,142,682	RGD:5509061	MGI
G	Sp8	trans-acting transcription factor 8		IAGP	12	120,084,802	120,091,051	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	St8sia4	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4		IAGP	1	97,484,259	97,564,171	RGD:5509061	MGI
G	Tdo2	tryptophan 2,3-dioxygenase		IAGP	3	81,762,334	81,779,650	RGD:5509061	MGI
G	Trim71	tripartite motif-containing 71		IAGP	9	114,420,386	114,473,487	RGD:5509061	MGI
G	Uchl5	ubiquitin carboxyl-terminal esterase L5		IAGP	1	145,624,408	145,654,596	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vldlr	very low density lipoprotein receptor		IAGP	19	27,291,510	27,328,721	RGD:5509061	MGI
abnormal subiculum morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Nos2	nitric oxide synthase 2, inducible		IAGP	11	78,734,361	78,773,626	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
abnormal telencephalon morphology
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apaf1	apoptotic peptidase activating factor 1		IAGP	10	90,452,056	90,545,488	RGD:5509061	MGI
G	App	amyloid beta (A4) precursor protein		IAGP	16	84,954,688	85,173,948	RGD:5509061	MGI
G	Arl6	ADP-ribosylation factor-like 6		IAGP	16	59,613,147	59,639,165	RGD:5509061	MGI
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Bag6	BCL2-associated athanogene 6		IAGP	17	35,272,187	35,284,181	RGD:5509061	MGI
G	Casp9	caspase 9		IAGP	4	141,349,527	141,371,890	RGD:5509061	MGI
G	Chrd	chordin		IAGP	16	20,733,200	20,742,457	RGD:5509061	MGI
G	Dkk1	dickkopf homolog 1 (Xenopus laevis)		IAGP	19	30,620,366	30,623,986	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Fzd3	frizzled homolog 3 (Drosophila)		IAGP	14	65,811,278	65,881,300	RGD:5509061	MGI
G	Gli1	GLI-Kruppel family member GLI1		IAGP	10	126,766,938	126,778,635	RGD:5509061	MGI
G	Gli2	GLI-Kruppel family member GLI2		IAGP	1	120,730,638	120,950,196	RGD:5509061	MGI
G	Gpr124	G protein-coupled receptor 124		IAGP	8	28,196,313	28,233,894	RGD:5509061	MGI
G	Gpr124	G protein-coupled receptor 124		IAGP	8	28,196,313	28,233,894	RGD:5509061	MGI
G	Gsx2	GS homeobox 2		IAGP	5	75,471,626	75,473,918	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hey1	hairy/enhancer-of-split related with YRPW motif 1		IAGP	3	8,663,359	8,667,038	RGD:5509061	MGI
G	Hey2	hairy/enhancer-of-split related with YRPW motif 2		IAGP	10	30,552,165	30,562,589	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Hspg2	perlecan (heparan sulfate proteoglycan 2)		IAGP	4	137,024,718	137,126,545	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Hydin	HYDIN, axonemal central pair apparatus protein		IAGP	8	112,790,877	113,134,153	RGD:5509061	MGI
G	Klf7	Kruppel-like factor 7 (ubiquitous)		IAGP	1	64,082,237	64,167,963	RGD:5509061	MGI
G	Lhx1	LIM homeobox protein 1		IAGP	11	84,332,881	84,339,036	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lrp2	low density lipoprotein receptor-related protein 2		IAGP	2	69,262,392	69,424,124	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mir9-2	microRNA 9-2		IAGP	13	83,878,419	83,878,490	RGD:5509061	MGI
G	Mir9-3	microRNA 9-3		IAGP	7	86,650,150	86,650,239	RGD:5509061	MGI
G	Ncor2	nuclear receptor co-repressor 2		IAGP	5	125,497,525	125,659,584	RGD:5509061	MGI
G	Ndst1	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1		IAGP	18	60,845,617	60,873,043	RGD:5509061	MGI
G	Nog	noggin		IAGP	11	89,161,952	89,163,873	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Pcdh10	protocadherin 10		IAGP	3	45,182,320	45,238,501	RGD:5509061	MGI
G	Pgap1	post-GPI attachment to proteins 1		IAGP	1	54,537,550	54,614,526	RGD:5509061	MGI
G	Psap	prosaposin		IAGP	10	59,740,376	59,765,348	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Rfx4	regulatory factor X, 4 (influences HLA class II expression)		IAGP	10	84,218,793	84,369,283	RGD:5509061	MGI
G	S1pr1	sphingosine-1-phosphate receptor 1		IAGP	3	115,413,351	115,417,973	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Shh	sonic hedgehog		IAGP	5	28,783,380	28,793,641	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Six3	sine oculis-related homeobox 3		IAGP	17	86,020,174	86,025,531	RGD:5509061	MGI
G	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2		IAGP	2	102,498,840	102,630,941	RGD:5509061	MGI
G	Smarcc1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1		IAGP	9	110,034,528	110,142,682	RGD:5509061	MGI
G	Spen	SPEN homolog, transcriptional regulator (Drosophila)		IAGP	4	141,023,805	141,094,512	RGD:5509061	MGI
G	Tctn1	tectonic family member 1		IAGP	5	122,691,524	122,714,469	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
absent Cajal-Retzius cell
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Wnt3a	wingless-related MMTV integration site 3A		IAGP	11	59,061,538	59,104,253	RGD:5509061	MGI
absent dentate gyrus
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atrx	alpha thalassemia/mental retardation syndrome X-linked homolog (human)		IAGP	X	102,992,954	103,124,711	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Fezf1	Fez family zinc finger 1		IAGP	6	23,195,047	23,198,264	RGD:5509061	MGI
G	Fezf2	Fez family zinc finger 2		IAGP	14	13,174,406	13,178,379	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx5	LIM homeobox protein 5		IAGP	5	120,881,895	120,891,466	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurod1	neurogenic differentiation 1		IAGP	2	79,292,798	79,296,793	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
G	Nfib	nuclear factor I/B		IAGP	4	81,936,077	82,151,212	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
absent hippocampal fimbria
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Arx	aristaless related homeobox		IAGP	X	90,531,985	90,543,696	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Lhx5	LIM homeobox protein 5		IAGP	5	120,881,895	120,891,466	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
absent hippocampus
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Lef1	lymphoid enhancer binding factor 1		IAGP	3	130,813,389	130,926,252	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
absent hippocampus CA1 region
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
absent hippocampus CA2 region
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
absent hippocampus CA3 region
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
absent hippocampus pyramidal cells
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Sqstm1	sequestosome 1		IAGP	11	50,013,654	50,024,292	RGD:5509061	MGI
absent hippocampus stratum oriens
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Pafah1b1	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1		IAGP	11	74,487,452	74,537,886	RGD:5509061	MGI
decreased hippocampus pyramidal cell number
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atrx	alpha thalassemia/mental retardation syndrome X-linked homolog (human)		IAGP	X	102,992,954	103,124,711	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Csf1	colony stimulating factor 1 (macrophage)		IAGP	3	107,543,966	107,563,387	RGD:5509061	MGI
G	Ei24	etoposide induced 2.4 mRNA		IAGP	9	36,586,740	36,604,653	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Nr4a3	nuclear receptor subfamily 4, group A, member 3		IAGP	4	48,064,120	48,096,224	RGD:5509061	MGI
G	Pou1f1	POU domain, class 1, transcription factor 1		IAGP	16	65,520,964	65,534,316	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Stam	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1		IAGP	2	13,995,739	14,069,965	RGD:5509061	MGI
G	Trib2	tribbles homolog 2 (Drosophila)		IAGP	12	15,798,533	15,823,591	RGD:5509061	MGI
G	Tuba1a	tubulin, alpha 1A		IAGP	15	98,780,278	98,783,932	RGD:5509061	MGI
dilated lateral ventricles
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ak8	adenylate kinase 8		IAGP	2	28,555,681	28,668,685	RGD:5509061	MGI
G	Arhgap5	Rho GTPase activating protein 5		IAGP	12	53,617,064	53,668,839	RGD:5509061	MGI
G	Bbs1	Bardet-Biedl syndrome 1 (human)		IAGP	19	4,886,882	4,906,627	RGD:5509061	MGI
G	Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)		IAGP	3	108,193,766	108,218,412	RGD:5509061	MGI
G	Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)		IEA	3	108,193,766	108,218,412	RGD:5509061	MGI
G	Col18a1	collagen, type XVIII, alpha 1		IAGP	10	76,514,924	76,629,275	RGD:5509061	MGI
G	Dhcr7	7-dehydrocholesterol reductase		IAGP	7	151,009,072	151,034,315	RGD:5509061	MGI
G	Dlg5	discs, large homolog 5 (Drosophila)		IAGP	14	24,953,175	25,065,142	RGD:5509061	MGI
G	Dpcd	deleted in primary ciliary dyskinesia		IAGP	19	45,635,105	45,652,777	RGD:5509061	MGI
G	Dpcd	deleted in primary ciliary dyskinesia		IAGP	19	45,635,105	45,652,777	RGD:5509061	MGI
G	Dpcd	deleted in primary ciliary dyskinesia		IAGP	19	45,635,105	45,652,777	RGD:5509061	MGI
G	E2f5	E2F transcription factor 5		IAGP	3	14,578,671	14,606,309	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Ercc6	excision repair cross-complementing rodent repair deficiency, complementation group 6		IAGP	14	33,326,707	33,394,175	RGD:5509061	MGI
G	Fkrp	fukutin related protein		IAGP	7	17,394,616	17,402,081	RGD:5509061	MGI
G	Foxc1	forkhead box C1		IEA	13	31,898,515	31,902,504	RGD:5509061	MGI
G	Foxj1	forkhead box J1		IAGP	11	116,192,018	116,196,668	RGD:5509061	MGI
G	Fzd3	frizzled homolog 3 (Drosophila)		IAGP	14	65,811,278	65,881,300	RGD:5509061	MGI
G	Gdf7	growth differentiation factor 7		IAGP	12	8,304,724	8,308,760	RGD:5509061	MGI
G	Hsf1	heat shock factor 1		IAGP	15	76,307,875	76,331,402	RGD:5509061	MGI
G	Hsf2	heat shock factor 2		IAGP	10	57,206,191	57,232,949	RGD:5509061	MGI
G	Htt	huntingtin		IAGP	5	35,104,389	35,252,045	RGD:5509061	MGI
G	Hydin	HYDIN, axonemal central pair apparatus protein		IEA	8	112,790,877	113,134,153	RGD:5509061	MGI
G	Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10		IAGP	1	174,271,341	174,304,216	RGD:5509061	MGI
G	L1cam	L1 cell adhesion molecule		IAGP	X	71,099,119	71,126,173	RGD:5509061	MGI
G	Lbr	lamin B receptor		IAGP	1	183,745,446	183,772,532	RGD:5509061	MGI
G	Llgl1	lethal giant larvae homolog 1 (Drosophila)		IAGP	11	60,513,192	60,527,690	RGD:5509061	MGI
G	Map3k12	mitogen-activated protein kinase kinase kinase 12		IAGP	15	102,328,078	102,347,435	RGD:5509061	MGI
G	Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3		IAGP	17	25,034,451	25,073,922	RGD:5509061	MGI
G	Mdm4	transformed mouse 3T3 cell double minute 4		IAGP	1	134,886,422	134,921,925	RGD:5509061	MGI
G	Meox2	mesenchyme homeobox 2		IAGP	12	37,835,133	37,906,115	RGD:5509061	MGI
G	Msi1	musashi RNA-binding protein 1		IAGP	5	115,879,694	115,904,211	RGD:5509061	MGI
G	Mycbp2	MYC binding protein 2		IAGP	14	103,512,628	103,746,017	RGD:5509061	MGI
G	Napa	N-ethylmaleimide sensitive fusion protein attachment protein alpha		IAGP	7	16,683,992	16,703,324	RGD:5509061	MGI
G	Nek1	NIMA (never in mitosis gene a)-related expressed kinase 1		IAGP	8	63,472,017	63,609,031	RGD:5509061	MGI
G	Nfia	nuclear factor I/A		IAGP	4	97,248,634	97,785,567	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Nme7	NME/NM23 family member 7		IAGP	1	166,237,806	166,367,428	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Ophn1	oligophrenin 1		IAGP	X	95,752,854	96,086,324	RGD:5509061	MGI
G	Pax5	paired box gene 5		IAGP	4	44,544,378	44,723,312	RGD:5509061	MGI
G	Pkd1	polycystic kidney disease 1 homolog		IAGP	17	24,686,895	24,733,459	RGD:5509061	MGI
G	Pomgnt1	protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase		IAGP	4	115,823,123	115,832,449	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Slx4	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)		IAGP	16	3,979,123	4,001,680	RGD:5509061	MGI
G	Spef2	sperm flagellar 2		IAGP	15	9,592,491	9,678,561	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	St8sia4	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4		IAGP	1	97,484,259	97,564,171	RGD:5509061	MGI
G	Tal2	T cell acute lymphocytic leukemia 2		IAGP	4	53,792,577	53,799,757	RGD:5509061	MGI
G	Trp73	transformation related protein 73		IAGP	4	153,430,358	153,514,317	RGD:5509061	MGI
G	Ulk4	unc-51-like kinase 4		IAGP	9	120,873,572	121,186,290	RGD:5509061	MGI
G	Xpa	xeroderma pigmentosum, complementation group A		IAGP	4	46,188,094	46,209,183	RGD:5509061	MGI
G	Zfp423	zinc finger protein 423		IAGP	8	90,185,709	90,483,494	RGD:5509061	MGI
G	Zic5	zinc finger protein of the cerebellum 5		IAGP	14	122,858,382	122,864,880	RGD:5509061	MGI
ectopic hippocampus pyramidal cells
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Apc2	adenomatosis polyposis coli 2		IAGP	10	79,764,565	79,781,001	RGD:5509061	MGI
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
G	Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6		IAGP	16	94,970,290	95,219,303	RGD:5509061	MGI
G	Lyst	lysosomal trafficking regulator		IAGP	13	13,682,676	13,869,707	RGD:5509061	MGI
G	Macf1	microtubule-actin crosslinking factor 1		IAGP	4	123,026,959	123,361,603	RGD:5509061	MGI
G	Mllt4	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4		IAGP	17	13,897,548	14,042,801	RGD:5509061	MGI
G	Neurod6	neurogenic differentiation 6		IAGP	6	55,627,812	55,631,257	RGD:5509061	MGI
enlarged hippocampus
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Agtpbp1	ATP/GTP binding protein 1		IEA	13	59,550,896	59,658,680	RGD:5509061	MGI
G	Akt3	thymoma viral proto-oncogene 3		IAGP	1	178,952,246	179,178,898	RGD:5509061	MGI
G	Cd81	CD81 antigen		IAGP	7	150,238,655	150,253,835	RGD:5509061	MGI
G	Kcna1	potassium voltage-gated channel, shaker-related subfamily, member 1		IAGP	6	126,586,481	126,595,819	RGD:5509061	MGI
G	Mapt	microtubule-associated protein tau		IAGP	11	104,092,750	104,193,410	RGD:5509061	MGI
Q	Hipp1_m	hippocampal weight 1 (mouse)		IAGP	1	152,225,177	186,225,315	RGD:5509061	MGI
Q	Hipp2_m	hippocampal weight 2 (mouse)		IAGP	5	18,957,616	52,957,725	RGD:5509061	MGI
enlarged lateral ventricles
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ak7	adenylate kinase 7		IAGP	12	106,944,192	107,020,657	RGD:5509061	MGI
G	Ank2	ankyrin 2, brain		IAGP	3	126,624,525	126,701,370	RGD:5509061	MGI
G	Aspa	aspartoacylase		IAGP	11	73,118,490	73,138,136	RGD:5509061	MGI
G	Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide		IAGP	11	69,413,252	69,419,462	RGD:5509061	MGI
G	Atxn1	ataxin 1		IAGP	13	45,650,262	46,060,345	RGD:5509061	MGI
G	Atxn1l	ataxin 1-like		IAGP				RGD:5509061	MGI
G	Bbs1	Bardet-Biedl syndrome 1 (human)		IAGP	19	4,886,882	4,906,627	RGD:5509061	MGI
G	Bbs2	Bardet-Biedl syndrome 2 (human)		IAGP	8	96,591,854	96,622,711	RGD:5509061	MGI
G	Bbs4	Bardet-Biedl syndrome 4 (human)		IAGP	9	59,169,773	59,201,315	RGD:5509061	MGI
G	Dclk1	doublecortin-like kinase 1		IAGP	3	55,046,448	55,342,990	RGD:5509061	MGI
G	Dcx	doublecortin		IAGP	X	140,290,385	140,367,762	RGD:5509061	MGI
G	Dnah5	dynein, axonemal, heavy chain 5		IAGP	15	28,133,521	28,401,800	RGD:5509061	MGI
G	Dscam	Down syndrome cell adhesion molecule		IAGP	16	96,813,686	97,392,342	RGD:5509061	MGI
G	Ei24	etoposide induced 2.4 mRNA		IAGP	9	36,586,740	36,604,653	RGD:5509061	MGI
G	Fzd3	frizzled homolog 3 (Drosophila)		IAGP	14	65,811,278	65,881,300	RGD:5509061	MGI
G	Hif1a	hypoxia inducible factor 1, alpha subunit		IAGP	12	75,008,854	75,048,517	RGD:5509061	MGI
G	Hsd17b2	hydroxysteroid (17-beta) dehydrogenase 2		IAGP	8	120,225,846	120,282,929	RGD:5509061	MGI
G	Insc	inscuteable homolog (Drosophila)		IAGP	7	121,889,280	121,993,894	RGD:5509061	MGI
G	Lbr	lamin B receptor		IAGP	1	183,745,446	183,772,532	RGD:5509061	MGI
G	Map1b	microtubule-associated protein 1B		IAGP	13	100,191,419	100,286,557	RGD:5509061	MGI
G	Mkks	McKusick-Kaufman syndrome		IAGP	2	136,699,516	136,717,142	RGD:5509061	MGI
G	Nfix	nuclear factor I/X		IAGP	8	87,231,498	87,324,239	RGD:5509061	MGI
G	Npas3	neuronal PAS domain protein 3		IAGP	12	54,349,664	55,173,162	RGD:5509061	MGI
G	Numb	numb gene homolog (Drosophila)		IAGP	12	85,136,389	85,183,293	RGD:5509061	MGI
G	Numbl	numb-like		IAGP	7	28,043,780	28,067,169	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Pou3f2	POU domain, class 3, transcription factor 2		IAGP	4	22,413,941	22,415,278	RGD:5509061	MGI
G	Pou3f3	POU domain, class 3, transcription factor 3		IAGP	1	42,753,991	42,757,055	RGD:5509061	MGI
G	Psen1	presenilin 1		IAGP	12	85,029,513	85,076,149	RGD:5509061	MGI
G	Psen2	presenilin 2		IAGP	1	182,157,135	182,186,431	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Usp18	ubiquitin specific peptidase 18		IAGP	6	121,195,924	121,220,935	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Vangl2	vang-like 2 (van gogh, Drosophila)		IAGP	1	173,934,502	173,957,399	RGD:5509061	MGI
G	Wasf1	WAS protein family, member 1		IAGP	10	40,603,340	40,658,375	RGD:5509061	MGI
forebrain hypoplasia
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Akap13	A kinase (PRKA) anchor protein 13		IAGP	7	82,600,420	82,899,495	RGD:5509061	MGI
G	Arid1a	AT rich interactive domain 1A (SWI-like)		IAGP	4	133,234,923	133,309,526	RGD:5509061	MGI
G	Arnt	aryl hydrocarbon receptor nuclear translocator		IAGP	3	95,238,312	95,301,162	RGD:5509061	MGI
G	Cycs	cytochrome c, somatic		IAGP	6	50,512,562	50,516,473	RGD:5509061	MGI
G	Dnm1l	dynamin 1-like		IAGP	16	16,312,326	16,359,123	RGD:5509061	MGI
G	Erf	Ets2 repressor factor		IAGP	7	26,027,579	26,035,777	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Hesx1	homeobox gene expressed in ES cells		IAGP	14	27,813,548	27,815,512	RGD:5509061	MGI
G	Hsd17b7	hydroxysteroid (17-beta) dehydrogenase 7		IAGP	1	171,879,668	171,899,336	RGD:5509061	MGI
G	Hspa5	heat shock protein 5		IAGP	2	34,627,610	34,632,049	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Lrp6	low density lipoprotein receptor-related protein 6		IAGP	6	134,400,434	134,516,931	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Pax3	paired box gene 3		IAGP	1	78,097,842	78,193,711	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Phgdh	3-phosphoglycerate dehydrogenase		IAGP	3	98,117,094	98,143,892	RGD:5509061	MGI
G	Setd2	SET domain containing 2		IAGP	9	110,435,101	110,521,137	RGD:5509061	MGI
G	Smo	smoothened homolog (Drosophila)		IAGP	6	29,685,497	29,711,366	RGD:5509061	MGI
G	Sp8	trans-acting transcription factor 8		IAGP	12	120,084,802	120,091,051	RGD:5509061	MGI
G	Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)		IAGP	6	72,576,374	72,738,950	RGD:5509061	MGI
G	Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)		IAGP	6	72,576,374	72,738,950	RGD:5509061	MGI
G	Tulp3	tubby-like protein 3		IAGP	6	128,271,179	128,305,869	RGD:5509061	MGI
hippocampal neuron degeneration
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Bmi1	Bmi1 polycomb ring finger oncogene		IAGP	2	18,598,645	18,608,256	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Cox10	cytochrome c oxidase assembly protein 10		IAGP	11	63,776,129	63,892,974	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Epm2a	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha		IAGP	10	11,063,243	11,177,275	RGD:5509061	MGI
G	Fshr	follicle stimulating hormone receptor		IAGP	17	89,384,292	89,600,015	RGD:5509061	MGI
G	Gba	glucosidase, beta, acid		IAGP	3	89,006,850	89,012,603	RGD:5509061	MGI
G	Gfap	glial fibrillary acidic protein		IAGP	11	102,748,650	102,758,514	RGD:5509061	MGI
G	Gna11	guanine nucleotide binding protein, alpha 11		IAGP	10	80,991,477	81,007,791	RGD:5509061	MGI
G	Gnaq	guanine nucleotide binding protein, alpha q polypeptide		IAGP	19	16,207,321	16,461,943	RGD:5509061	MGI
G	Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)		IAGP	3	80,488,858	80,606,713	RGD:5509061	MGI
G	Hpca	hippocalcin		IAGP	4	128,788,819	128,798,984	RGD:5509061	MGI
G	Inpp4a	inositol polyphosphate-4-phosphatase, type I		IAGP	1	37,356,738	37,467,581	RGD:5509061	MGI
G	Park2	Parkinson disease (autosomal recessive, juvenile) 2, parkin		IAGP	17	11,033,250	12,256,227	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Ppt1	palmitoyl-protein thioesterase 1		IAGP	4	122,513,485	122,536,418	RGD:5509061	MGI
G	Pten	phosphatase and tensin homolog		IAGP	19	32,832,067	32,900,650	RGD:5509061	MGI
G	Slc12a6	solute carrier family 12, member 6		IAGP	2	112,106,471	112,203,320	RGD:5509061	MGI
G	Stambp	STAM binding protein		IAGP	6	83,493,200	83,522,498	RGD:5509061	MGI
G	Uqcrfs1	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1		IAGP	13	30,632,181	30,637,185	RGD:5509061	MGI
G	Vim	vimentin		IAGP	2	13,495,938	13,504,453	RGD:5509061	MGI
hippocampus pyramidal cell degeneration
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2		IAGP	2	102,498,840	102,630,941	RGD:5509061	MGI
G	Trib2	tribbles homolog 2 (Drosophila)		IAGP	12	15,798,533	15,823,591	RGD:5509061	MGI
increased hippocampus pyramidal cell number
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Fyn	Fyn proto-oncogene		IAGP	10	39,089,605	39,285,187	RGD:5509061	MGI
loss of hippocampal neurons
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Atrx	alpha thalassemia/mental retardation syndrome X-linked homolog (human)		IAGP	X	102,992,954	103,124,711	RGD:5509061	MGI
G	C3	complement component 3		IAGP	17	57,343,396	57,367,559	RGD:5509061	MGI
G	Cacng2	calcium channel, voltage-dependent, gamma subunit 2		IAGP	15	77,824,053	77,949,710	RGD:5509061	MGI
G	Clcn7	chloride channel 7		IAGP	17	25,270,339	25,299,044	RGD:5509061	MGI
G	Cst3	cystatin C		IAGP	2	148,697,468	148,701,204	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)		IAGP	3	80,488,858	80,606,713	RGD:5509061	MGI
G	Hif1a	hypoxia inducible factor 1, alpha subunit		IAGP	12	75,008,854	75,048,517	RGD:5509061	MGI
G	Nos2	nitric oxide synthase 2, inducible		IAGP	11	78,734,361	78,773,626	RGD:5509061	MGI
G	Nr4a3	nuclear receptor subfamily 4, group A, member 3		IAGP	4	48,064,120	48,096,224	RGD:5509061	MGI
G	Plcb1	phospholipase C, beta 1		IAGP	2	134,611,900	135,300,994	RGD:5509061	MGI
G	Prkab1	protein kinase, AMP-activated, beta 1 non-catalytic subunit		IAGP	5	116,463,599	116,474,437	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	St8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2		IAGP	7	81,084,005	81,158,568	RGD:5509061	MGI
G	St8sia4	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4		IAGP	1	97,484,259	97,564,171	RGD:5509061	MGI
Q	Sicd1_m	seizure-induced cell death 1 (mouse)		IAGP	18	80,328,788	89,742,182	RGD:5509061	MGI
Q	Sicd1_m	seizure-induced cell death 1 (mouse)		IAGP	18	80,328,788	89,742,182	RGD:5509061	MGI
Q	Sicd1_m	seizure-induced cell death 1 (mouse)		IAGP	18	80,328,788	89,742,182	RGD:5509061	MGI
small hippocampus
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	Ak8	adenylate kinase 8		IAGP	2	28,555,681	28,668,685	RGD:5509061	MGI
G	Arl6	ADP-ribosylation factor-like 6		IAGP	16	59,613,147	59,639,165	RGD:5509061	MGI
G	Atr	ataxia telangiectasia and Rad3 related		IAGP	9	95,758,016	95,852,063	RGD:5509061	MGI
G	Bbs1	Bardet-Biedl syndrome 1 (human)		IAGP	19	4,886,882	4,906,627	RGD:5509061	MGI
G	Bbs2	Bardet-Biedl syndrome 2 (human)		IAGP	8	96,591,854	96,622,711	RGD:5509061	MGI
G	Bbs4	Bardet-Biedl syndrome 4 (human)		IAGP	9	59,169,773	59,201,315	RGD:5509061	MGI
G	Bdnf	brain derived neurotrophic factor		IAGP	2	109,514,857	109,567,200	RGD:5509061	MGI
G	Cdk5rap2	CDK5 regulatory subunit associated protein 2		IAGP	4	69,884,058	70,071,401	RGD:5509061	MGI
G	Ckb	creatine kinase, brain		IAGP	12	112,907,566	112,910,549	RGD:5509061	MGI
G	Ckmt1	creatine kinase, mitochondrial 1, ubiquitous		IAGP	2	121,184,377	121,189,473	RGD:5509061	MGI
G	Clcn3	chloride channel 3		IAGP	8	63,389,186	63,462,108	RGD:5509061	MGI
G	Cplx2	complexin 2		IAGP	13	54,472,713	54,485,278	RGD:5509061	MGI
G	Efhc1	EF-hand domain (C-terminal) containing 1		IAGP	1	20,941,707	20,980,922	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Emx2	empty spiracles homeobox 2		IAGP	19	59,533,180	59,539,847	RGD:5509061	MGI
G	Gja1	gap junction protein, alpha 1		IAGP	10	56,097,106	56,110,225	RGD:5509061	MGI
G	Hsf2	heat shock factor 2		IAGP	10	57,206,191	57,232,949	RGD:5509061	MGI
G	Lrrtm1	leucine rich repeat transmembrane neuronal 1		IAGP	6	77,192,711	77,195,511	RGD:5509061	MGI
G	Mkks	McKusick-Kaufman syndrome		IAGP	2	136,699,516	136,717,142	RGD:5509061	MGI
G	Mpp5	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)		IAGP	12	79,849,934	79,941,701	RGD:5509061	MGI
G	Nr2e1	nuclear receptor subfamily 2, group E, member 1		IAGP	10	42,281,777	42,303,394	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx1	orthodenticle homolog 1 (Drosophila)		IAGP	11	21,894,767	21,901,654	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Otx2	orthodenticle homolog 2 (Drosophila)		IAGP	14	49,277,846	49,282,547	RGD:5509061	MGI
G	Ppp1r9b	protein phosphatase 1, regulatory subunit 9B		IAGP	11	94,852,526	94,868,212	RGD:5509061	MGI
G	Psmg1	proteasome (prosome, macropain) assembly chaperone 1		IAGP	16	96,201,542	96,212,510	RGD:5509061	MGI
G	Rac1	RAS-related C3 botulinum substrate 1		IAGP	5	144,266,349	144,288,861	RGD:5509061	MGI
G	Sox2	SRY-box containing gene 2		IAGP	3	34,548,927	34,551,383	RGD:5509061	MGI
G	Sp2	Sp2 transcription factor		IAGP	11	96,814,651	96,839,002	RGD:5509061	MGI
G	Spen	SPEN homolog, transcriptional regulator (Drosophila)		IAGP	4	141,023,805	141,094,512	RGD:5509061	MGI
G	Usp14	ubiquitin specific peptidase 14		IAGP	18	9,993,613	10,030,147	RGD:5509061	MGI
G	Zbtb18	zinc finger and BTB domain containing 18		IAGP	1	179,374,792	179,380,895	RGD:5509061	MGI
G	Zdhhc17	zinc finger, DHHC domain containing 17		IAGP	10	110,378,835	110,447,122	RGD:5509061	MGI
telencephalon hypoplasia
	Symbol	Object Name	GBrowse	Evidence	Chr	Start	Stop	Reference	Source
G	B9d1	B9 protein domain 1		IAGP	11	61,318,674	61,326,429	RGD:5509061	MGI
G	Emx1	empty spiracles homeobox 1		IAGP	6	85,137,925	85,154,457	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Foxg1	forkhead box G1		IAGP	12	50,483,870	50,487,854	RGD:5509061	MGI
G	Gt(ROSA)26Sor	gene trap ROSA 26, Philippe Soriano		IAGP	6	113,017,422	113,027,238	RGD:5509061	MGI
G	Intu	inturned planar cell polarity effector homolog (Drosophila)		IAGP	3	40,457,623	40,508,662	RGD:5509061	MGI
G	Lhx2	LIM homeobox protein 2		IAGP	2	38,206,828	38,225,248	RGD:5509061	MGI
G	Lias	lipoic acid synthetase		IAGP	5	65,782,736	65,800,446	RGD:5509061	MGI
G	Mdm4	transformed mouse 3T3 cell double minute 4		IAGP	1	134,886,422	134,921,925	RGD:5509061	MGI
G	Pax6	paired box gene 6		IAGP	2	105,516,602	105,537,226	RGD:5509061	MGI
G	Sp8	trans-acting transcription factor 8		IAGP	12	120,084,802	120,091,051	RGD:5509061	MGI

Term paths to the root

Path 1
Term	Annotations
mammalian phenotype	192063
nervous system phenotype	20664
abnormal nervous system morphology	15549
abnormal brain morphology	7395
abnormal forebrain morphology	3250