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MEASUREMENT METHODS - ANNOTATIONS

The Clinical Measurement Ontology (CMO), Measurement Methods Ontology (MMO), and Experimental Condition Ontology (XCO) are currently being developed at the Rat Genome Database. For more information about these vocabularies please see Shimoyama et al. Three ontologies to define phenotype measurement data. Front Genet. 2012;3:87. Epub 2012 May 28 or contact us (http://rgd.mcw.edu/contact/index.shtml).
Term:ex vivo light microscopy
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Accession:MMO:0000111 term browser browse the term
Definition:Examination or observation of material performed outside the living body through a light microscope, an optical instrument that uses visible light (electromagnetic radiation with wavelengths between approximately 390 and 700 nm) processed through a lens or a combination of lenses to produce magnified images.


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ex vivo light microscopy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Colcr2 Colorectal carcinoma resistance QTL 2 IDA RGD PMID:17510081 RGD:1625309 NCBI chr15:2,266,368...22,711,984 JBrowse link
Q Colcr5 Colorectal carcinoma resistance QTL 5 IDA RGD PMID:17510081 RGD:1625309 NCBI chr 6:122,549,046...137,801,795 JBrowse link
Q Colcr8 Colorectal carcinoma resistance QTL 8 IDA RGD PMID:17510081 RGD:1625309 NCBI chr18:22,066,242...52,293,055 JBrowse link
Q Colcr9 Colorectal carcinoma resistance QTL 9 IDA RGD PMID:17510081 RGD:1625309 NCBI chr20:1,530,655...46,530,655 JBrowse link
Q Eae2 Experimental allergic encephalomyelitis QTL 2 IDA RGD PMID:9973459 RGD:69694 NCBI chr 4:21,333,343...39,505,420 JBrowse link
Q Eae3 Experimental allergic encephalomyelitis QTL 3 IDA RGD PMID:9973459 RGD:69694 NCBI chr10:26,521,957...61,345,413 JBrowse link
Q Eau1 Experimental allergic uveoretinitis QTL 1 IDA RGD PMID:10323205 RGD:61073 NCBI chr 4:70,362,013...132,642,728 JBrowse link
Q Eau2 Experimental allergic uveoretinitis QTL 2 IDA RGD PMID:10323205 RGD:61073 NCBI chr12:8,525,423...28,064,601 JBrowse link
Q Eau3 Experimental allergic uveoretinitis QTL 3 IDA RGD PMID:10323205 RGD:61073 NCBI chr10:34,490,559...45,579,777 JBrowse link
Q Eau4 Experimental allergic uveoretinitis QTL 4 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 3:137,398,739...169,034,231 JBrowse link
Q Eau5 Experimental allergic uveoretinitis QTL 5 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 2:202,446,871...237,938,339 JBrowse link
Q Eau6 Experimental allergic uveoretinitis QTL 6 IDA RGD PMID:18453595 RGD:2296064 NCBI chr 7:84,257,275...129,257,275 JBrowse link
Q Eau7 Experimental allergic uveoretinitis QTL 7 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:27,957,626...34,490,668 JBrowse link
Q Eau8 Experimental allergic uveoretinitis QTL 8 IDA RGD PMID:18453595 RGD:2296064 NCBI chr19:17,154,433...57,337,602 JBrowse link
Q Eau9 Experimental allergic uveoretinitis QTL 9 IDA RGD PMID:18453595 RGD:2296064 NCBI chr10:65,927,233...82,565,079 JBrowse link
Q Edcs1 Endometrial carcinoma susceptibility QTL1 IDA RGD PMID:11745480 RGD:1599856 NCBI chr11:18,976,208...24,697,116 JBrowse link
Q Edcs2 Endometrial carcinoma susceptibility QTL2 IDA RGD PMID:11745480 RGD:1599856 NCBI chr12:6,833,190...17,870,186 JBrowse link
Q Edcs3 Endometrial carcinoma susceptibility QTL3 IDA RGD PMID:11745480 RGD:1599856 NCBI chr20:1...25,159,026 JBrowse link
Q Edcs4 Endometrial carcinoma susceptibility QTL 4 IDA RGD PMID:11745480 RGD:1599856 NCBI chr 1:206,081,677...251,081,677 JBrowse link
Q Edcs5 Endometrial carcinoma susceptibility QTL 5 IDA RGD PMID:11745480 RGD:1599856 NCBI chr17:57,246,723...70,852,846 JBrowse link
Q Gdil1 Gastrointestinal dilation QTL 1 IDA RGD PMID:21915282 RGD:6480217 NCBI chr 2:56,660,879...74,786,777 JBrowse link
Q Glom1 Glomerulus QTL 1 IDA RGD PMID:12397040 RGD:634618 NCBI chr  X:75,294,106...120,294,106 JBrowse link
Q Glom15 Glomerulus QTL 15 IDA RGD PMID:16482158 RGD:2293335 NCBI chr13:74,862,117...101,339,893 JBrowse link
Q Glom16 Glomerulus QTL 16 IDA RGD PMID:16482158 RGD:2293335 NCBI chr16:832,236...46,053,497 JBrowse link
Q Glom2 Glomerulus QTL 2 IDA RGD PMID:12397040 RGD:634618 NCBI chr 1:222,363,780...260,522,016 JBrowse link
Q Glom24 Glomerulus QTL 24 IDA RGD PMID:16482158 RGD:2293335 NCBI chr 5:97,570,330...136,479,578 JBrowse link
Q Glom27 Glomerulus QTL 27 IDA RGD PMID:22445570 RGD:7207870 NCBI chr13:20,605,871...101,339,738 JBrowse link
Q Glom3 Glomerulus QTL 3 IDA RGD PMID:12397040 RGD:634618
Q Glom4 Glomerulus QTL 4 IDA RGD PMID:14638907 RGD:730279 NCBI chr 2:20,304,672...65,304,672 JBrowse link
Q Glom5 Glomerulus QTL 5 IDA RGD PMID:14638907 RGD:730279 NCBI chr 7:96,670,164...135,012,528 JBrowse link
Q Glom6 Glomerulus QTL 6 IDA RGD PMID:14638907 RGD:730279 NCBI chr 9:64,573,531...109,573,531 JBrowse link
Q Glom7 Glomerulus QTL 7 IDA RGD PMID:14638907 RGD:730279 NCBI chr 6:71,201,409...116,201,409 JBrowse link
Q Glom8 Glomerulus QTL 8 IDA RGD PMID:14638907 RGD:730279 NCBI chr 6:86,894,788...131,894,788 JBrowse link
Q Iddm24 Insulin dependent diabetes mellitus QTL 24 IDA RGD PMID:17389329 RGD:1624306 NCBI chr 8:112,834,440...118,649,220 JBrowse link
Q Kiddil1 Kidney dilation QTL 1 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:81,132,889...104,393,926 JBrowse link
Q Kiddil2 Kidney dilation QTL 2 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:20,866,422...81,133,036 JBrowse link
Q Kiddil3 Kidney dilation QTL 3 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:81,132,889...104,393,926 JBrowse link
Q Kiddil4 Kidney dilation QTL 4 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 6:20,866,422...81,133,036 JBrowse link
Q Kiddil5 Kidney dilation QTL 5 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:42,804,607...157,142,209 JBrowse link
Q Kiddil6 Kidney dilation QTL 6 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:42,804,607...182,042,367 JBrowse link
Q Kiddil7 Kidney dilation QTL 7 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:219,753,301...247,136,170 JBrowse link
Q Kiddil8 Kidney dilation QTL 8 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 2:219,753,301...247,136,170 JBrowse link
Q Kiddil9 Kidney dilation QTL 9 IDA RGD PMID:18523158 RGD:2293631 NCBI chr 4:120,926,564...148,090,731 JBrowse link
Q Mcs2 Mammary carcinoma susceptibility QTL 2 IDA RGD PMID:9584103 RGD:61081 NCBI chr 7:19,032,807...35,526,300 JBrowse link
Q Mcsm1 Mammary carcinoma susceptibility modifier QTL 1 IDA RGD PMID:11139513 RGD:62417 NCBI chr 6:58,632,962...103,632,962 JBrowse link
Q Panci1 Pancreas inflammation QTL 1 IDA RGD PMID:11414764 RGD:619682 NCBI chr 7:116,677,189...127,103,496 JBrowse link
Q Pancm1 Pancreatic morphology QTL 1 IDA RGD PMID:9169130 RGD:61083 NCBI chr 1:181,759,564...214,537,555 JBrowse link
Q Plsm1 Polydactyly-luxate syndrome (PLS) morphotypes QTL 1 IDA RGD PMID:8997636 RGD:632346 NCBI chr 4:1...27,716,890 JBrowse link
Q Plsm2 Polydactyly-luxate syndrome (PLS) morphotypes QTL 2 IDA RGD PMID:8997636 RGD:632346 NCBI chr 4:132,422,778...177,422,778 JBrowse link
Q Plsm4 Polydactyly-luxate syndrome (PLS) morphotypes QTL 4 IDA RGD PMID:8997636 RGD:632346 NCBI chr11:54,457,534...86,241,447 JBrowse link
Q Prcs1 Prostate cancer susceptibility QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr19:15,114,598...34,521,833 JBrowse link
Q Prcs2 Prostate cancer susceptibility QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr20:4,606,607...17,617,956 JBrowse link
Q Rends1 Renal damage susceptibility QTL 1 IDA RGD PMID:10454439 RGD:632218 NCBI chr 1:169,537,671...214,537,671 JBrowse link
Q Rends2 Renal damage susceptibility QTL 2 IDA RGD PMID:12874092 RGD:631854 NCBI chr 1:19,333,571...56,983,283 JBrowse link
Q Rends3 Renal damage susceptibility QTL 3 IDA RGD PMID:12874092 RGD:631854 NCBI chr10:79,813,789...85,160,854 JBrowse link
Q Rends4 Renal damage susceptibility QTL 4 IDA RGD PMID:12874092 RGD:631854 NCBI chr16:1...26,727,669 JBrowse link
Q Rf20 Renal function QTL 20 IDA RGD PMID:14532335 RGD:727992 NCBI chr11:29,528,418...60,324,829 JBrowse link
Q Rf9 Renal function QTL 9 IDA RGD PMID:14532335 RGD:727992 NCBI chr 2:133,914,684...202,447,032 JBrowse link
Q Strs1 Sensitivity to stroke QTL 1 IDA RGD PMID:8696337 RGD:61093 NCBI chr 1:121,767,634...166,767,634 JBrowse link
Q Strs2 Sensitivity to stroke QTL 2 IDA RGD PMID:8696337 RGD:61093 NCBI chr 5:135,929,696...166,875,058 JBrowse link
Q Strs3 Sensitivity to stroke QTL 3 IDA RGD PMID:8696337 RGD:61093 NCBI chr 4:40,433,388...85,433,388 JBrowse link
Q Tescar1 Testicular tumor resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr11:1,041,931...66,113,562 JBrowse link
Q Toxo1 Toxoplasma gondii resistance QTL 1 IDA RGD PMID:16407112 RGD:1578521 NCBI chr10:52,200,030...59,378,278 JBrowse link
Q Vetf10 Vascular elastic tissue fragility QTL 10 IDA RGD PMID:17356016 RGD:8662443 NCBI chr10:6,154,182...73,453,136 JBrowse link
Q Vetf3 Vascular elastic tissue fragility QTL 3 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 5:2,282,226...69,540,447 JBrowse link
Q Vetf4 Vascular elastic tissue fragility QTL 4 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 3:59,242,096...157,323,038 JBrowse link
Q Vetf5 Vascular elastic tissue fragility QTL 5 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 8:28,242,912...99,525,068 JBrowse link
Q Vetf6 Vascular elastic tissue fragility QTL 6 IDA RGD PMID:17356016 RGD:8662443 NCBI chr 9:36,962,359...92,058,970 JBrowse link
Q Wbc1 White blood cell count QTL 1 IDA RGD PMID:14532335 RGD:727992 NCBI chr 5:125,392,826...139,989,768 JBrowse link
ex vivo light microscopy with digital image analysis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bp49 Blood pressure QTL 49 IDA RGD PMID:9241273 RGD:61056 NCBI chr 5:60,293,434...98,603,051 JBrowse link
Q Bw61 Body weight QTL61 IDA RGD PMID:11853145 RGD:619672 NCBI chr 1:173,108,781...218,108,781 JBrowse link
Q Glom10 Glomerulus QTL 10 IDA RGD PMID:16720678 RGD:1581737 NCBI chr11:1...35,331,169 JBrowse link
Q Glom11 Glomerulus QTL 11 IDA RGD PMID:16720678 RGD:1581737
Q Glom12 Glomerulus QTL 12 IDA RGD PMID:16720678 RGD:1581737 NCBI chr 5:33,215,665...78,215,665 JBrowse link
Q Glom13 Glomerulus QTL 13 IDA RGD PMID:16720678 RGD:1581737
Q Glom14 Glomerulus QTL 14 IDA RGD PMID:16720678 RGD:1581737 NCBI chr15:34,054,139...79,054,139 JBrowse link
Q Glom17 Glomerulus QTL 17 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:166,532,971...191,278,129 JBrowse link
Q Glom18 Glomerulus QTL 18 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 1:185,356,336...231,689,108 JBrowse link
Q Glom19 Glomerulus QTL 19 IDA RGD PMID:18682577 RGD:2312422 NCBI chr 4:45,456,990...146,803,430 JBrowse link
Q Glom20 Glomerulus QTL 20 IDA RGD PMID:18682577 RGD:2312422 NCBI chr11:44,285,759...82,566,702 JBrowse link
Q Glom21 Glomerulus QTL 21 IDA RGD PMID:18682577 RGD:2312422 NCBI chr18:5,185,858...40,503,530 JBrowse link
Q Glom9 Glomerulus QTL 9 IDA RGD PMID:16720678 RGD:1581737 NCBI chr 2:92,337,601...137,337,601 JBrowse link
Q Hcar1 Hepatocarcinoma resistance QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr10:6,154,182...15,990,232 JBrowse link
Q Hcar10 Hepatocarcinoma resistance QTL 10 IDA RGD PMID:12154055 RGD:629566 NCBI chr 8:40,713,066...82,925,667 JBrowse link
Q Hcar11 Hepatocarcinoma resistance QTL 11 IDA RGD PMID:12154055 RGD:629566 NCBI chr 6:82,523,650...110,548,006 JBrowse link
Q Hcar12 Hepatocarcinoma resistance QTL 12 IDA RGD PMID:12154055 RGD:629566 NCBI chr 3:29,463,235...118,376,539 JBrowse link
Q Hcar13 Hepatocarcinoma resistance QTL 13 IDA RGD PMID:15185337 RGD:737884 NCBI chr 4:1...32,584,199 JBrowse link
Q Hcar14 Hepatocarcinoma resistance QTL 14 IDA RGD PMID:15185337 RGD:737884 NCBI chr18:51,464,733...83,218,561 JBrowse link
Q Hcar15 Hepatocarcinoma resistance QTL 15 IDA RGD PMID:15771619 RGD:1358145 NCBI chr 1:153,136,852...260,522,016 JBrowse link
Q Hcar2 Hepatocarcinoma resistance QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 4:78,878,504...123,878,504 JBrowse link
Q Hcar3 Hepatocarcinoma resistance QTL 3 IDA RGD PMID:10493520 RGD:619598 NCBI chr 8:54,237,644...99,103,503 JBrowse link
Q Hcar4 Hepatocarcinoma resistance QTL 4 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:193,422,268...214,537,671 JBrowse link
Q Hcar5 Hepatocarcinoma resistance QTL 5 IDA RGD PMID:10850431 RGD:619609 NCBI chr 1:214,537,555...226,660,468 JBrowse link
Q Hcar6 Hepatocarcinoma resistance QTL 6 IDA RGD PMID:10850431 RGD:619609
Q Hcar7 Hepatocarcinoma resistance QTL 7 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:70,808,386...115,808,386 JBrowse link
Q Hcar8 Hepatocarcinoma resistance QTL 8 IDA RGD PMID:10850431 RGD:619609 NCBI chr 4:123,143,783...168,143,783 JBrowse link
Q Hcar9 Hepatocarcinoma resistance QTL 9 IDA RGD PMID:12154055 RGD:629566 NCBI chr 4:109,866,907...167,139,601 JBrowse link
Q Hcas1 Hepatocarcinoma susceptibility QTL 1 IDA RGD PMID:10493520 RGD:619598 NCBI chr 7:91,412,594...129,807,172 JBrowse link
Q Hcas2 Hepatocarcinoma susceptibility QTL 2 IDA RGD PMID:10493520 RGD:619598 NCBI chr 1:5,925,874...115,540,829 JBrowse link
Q Hcas3 Hepatocarcinoma susceptibility QTL 3 IDA RGD PMID:12154055 RGD:629566 NCBI chr 1:144,267,353...222,987,745 JBrowse link
Q Hcas4 Hepatocarcinoma susceptibility QTL 4 IDA RGD PMID:12154055 RGD:629566 NCBI chr16:4,227,609...46,975,965 JBrowse link
Q Hcas5 Hepatocarcinoma susceptibility QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr 1:176,426,412...257,976,495 JBrowse link
Q Hcas6 Hepatocarcinoma susceptibility QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr14:39,057,237...83,368,335 JBrowse link
Q Hcas7 Hepatocarcinoma susceptibility QTL 7 IDA RGD PMID:15185337 RGD:737884 NCBI chr15:2,266,368...46,921,453 JBrowse link
Q Hcas8 Hepatocarcinoma susceptibility QTL 8 IDA RGD PMID:17079458 RGD:1599590 NCBI chr16:1...22,477,621 JBrowse link
Q Lnnr3 Liver neoplastic nodule remodeling QTL 3 IDA RGD PMID:15185337 RGD:737884 NCBI chr 2:1...41,244,106 JBrowse link
Q Lnnr4 Liver neoplastic nodule remodeling QTL 4 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:1...42,356,786 JBrowse link
Q Lnnr5 Liver neoplastic nodule remodeling QTL 5 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:59,874,408...85,581,182 JBrowse link
Q Lnnr6 Liver neoplastic nodule remodeling QTL 6 IDA RGD PMID:15185337 RGD:737884 NCBI chr13:74,862,117...85,581,182 JBrowse link
Q Pancm2 Pancreatic morphology QTL 2 IDA RGD PMID:20878524 RGD:4889455 NCBI chr10:76,748,906...107,211,142 JBrowse link
Q Prcr1 Prostate cancer resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 2:72,532,993...157,142,209 JBrowse link
Q Prcr2 Prostate cancer resistance QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 1:20,763,158...44,095,856 JBrowse link
Q Rf57 Renal function QTL 57 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 5:59,793,528...90,450,144 JBrowse link
Q Rf58 Renal function QTL 58 IDA RGD PMID:19584172 RGD:2316856 NCBI chr 7:68,938,720...113,886,318 JBrowse link
Q Smcn1 Smooth muscle cell number QTL 1 IDA RGD PMID:15741507 RGD:1357419 NCBI chr 2:59,134,147...127,460,910 JBrowse link
Q Vnigr1 Vascular neointimal growth QTL 1 IDA RGD PMID:16434542 RGD:1578306 NCBI chr 3:149,040,888...168,026,850 JBrowse link
Q Vnigr2 Vascular neointimal growth QTL 2 IDA RGD PMID:16434542 RGD:1578306 NCBI chr 3:130,656,562...169,034,231 JBrowse link
Q Vnigr3 Vascular neointimal growth QTL 3 IDA RGD PMID:16434542 RGD:1578306 NCBI chr 3:130,656,562...169,034,231 JBrowse link
ex vivo light microscopy with histochemistry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gdil2 Gastrointestinal dilation QTL 2 IDA RGD PMID:25790447 RGD:10402048 NCBI chr 2:24,903,853...74,786,777 JBrowse link
ex vivo light microscopy with immunohistochemistry and digital image analysis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gcr3 Gastric cancer resistance QTL 3 IDA RGD PMID:10706129 RGD:69698 NCBI chr16:17,696,791...82,635,055 JBrowse link
Q Lnnr1 Liver neoplastic nodule remodeling QTL 1 IDA RGD PMID:12672032 RGD:629574 NCBI chr 7:34,293,282...79,293,282 JBrowse link
Q Lnnr2 Liver neoplastic nodule remodeling QTL 2 IDA RGD PMID:12672032 RGD:629574 NCBI chr 1:233,948,574...260,522,016 JBrowse link
Q Neuinf4 Neuroinflammation QTL 4 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 1:1...28,736,750 JBrowse link
Q Neuinf5 Neuroinflammation QTL 5 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:9,462,246...58,265,113 JBrowse link
Q Neuinf6 Neuroinflammation QTL 6 IDA RGD PMID:19525015 RGD:2311085 NCBI chr 7:1...27,829,089 JBrowse link
Q Neuinf7 Neuroinflammation QTL 7 IDA RGD PMID:19525015 RGD:2311085 NCBI chr10:72,224,939...107,211,142 JBrowse link
ex vivo stereo light microscopy term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tspe1 Trichinella spiralis expulsion QTL 1 IDA RGD PMID:16465509 RGD:1578305 NCBI chr 9:61,381,434...65,691,299 JBrowse link

Related Phenotype Data for Term "ex vivo light microscopy" (MMO:0000111)

Rat Strains:
Clinical Measurements:
Experimental Conditions:
Measurement Methods:
Term paths to the root
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Term Annotations click to browse term
  measurement method 2368
    ex vivo method 1236
      ex vivo microscopy 132
        ex vivo light microscopy 127
          confocal microscopy + 0
          ex vivo light microscopy with digital image analysis + 49
          ex vivo light microscopy with histochemistry + 1
          ex vivo light microscopy with immunohistochemistry + 7
          ex vivo light microscopy with inverted microscope 0
          ex vivo linear measurement method using light microscopy 0
          ex vivo stereo light microscopy + 1
          ex vivo videomicroscopy 0
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