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ONTOLOGY REPORT - ANNOTATIONS

Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.


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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MPZ myelin protein zero involved_in IMP (PMID:18337304) UniProt PMID:18337304 NCBI chr 1:161,303,600...161,309,968
Ensembl chr 1:161,304,735...161,309,968 		JBrowse link
G TMIGD1 transmembrane and immunoglobulin domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26342724) Ensembl
MGI		 PMID:26342724 GO_REF:0000107 NCBI chr17:30,316,333...30,334,057
Ensembl chr17:30,316,333...30,334,059 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr15:88,803,436...88,875,353
Ensembl chr15:88,803,436...88,875,353 		JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800003) Ensembl
MGI		 PMID:15800003 GO_REF:0000107 NCBI chr11:129,375,233...129,452,279
Ensembl chr11:129,375,848...129,452,279 		JBrowse link
G BMP1 bone morphogenetic protein 1 involved_in TAS (PMID:3201241) PINC PMID:3201241 NCBI chr 8:22,165,372...22,212,326
Ensembl chr 8:22,165,140...22,212,326 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631181) Ensembl
MGI		 PMID:10631181 GO_REF:0000107 NCBI chr 4:94,757,955...95,158,450
Ensembl chr 4:94,757,955...95,158,448 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 6:131,948,176...131,951,372
Ensembl chr 6:131,948,176...131,951,372 		JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr17:50,464,496...50,468,880
Ensembl chr17:50,464,496...50,468,906 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 1:102,876,473...103,108,522
Ensembl chr 1:102,876,467...103,108,872 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554 		JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr11:69,771,022...69,775,341
Ensembl chr11:69,771,022...69,775,341 		JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:4,434,142...4,445,815
Ensembl chr12:4,428,155...4,445,815 		JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:36,027,808...36,124,214
Ensembl chr 6:36,027,782...36,111,236 		JBrowse link
G MGP matrix Gla protein involved_in TAS (PMID:9916809) PINC PMID:9916809 NCBI chr12:14,880,864...14,885,854
Ensembl chr12:14,880,864...14,885,857 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr 2:15,940,550...15,947,004
Ensembl chr 2:15,940,550...15,947,007 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671 		JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:10998416) Ensembl
MGI
GO_Central		 PMID:10998416 GO_REF:0000033 GO_REF:0000107 NCBI chr20:16,748,358...16,752,164
Ensembl chr20:16,748,358...16,770,062 		JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11593033) Ensembl
MGI		 PMID:11593033 GO_REF:0000107 NCBI chr16:2,088,708...2,135,898
Ensembl chr16:2,088,708...2,135,898 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 9:91,722,601...91,950,228
Ensembl chr 9:91,563,091...91,950,228 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISS UniProt GO_REF:0000024 NCBI chr12:23,529,504...24,562,650
Ensembl chr12:23,529,504...24,562,544 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:15,966,449...16,738,477
Ensembl chr11:15,966,449...16,739,591 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:10319868)
(PMID:12414734)		 UniProt
MGI
Ensembl		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416 		JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9250685) Ensembl
MGI		 PMID:9250685 GO_REF:0000107 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867 		JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10804168)
(PMID:10804169)		 Ensembl
MGI		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr 7:1,232,872...1,237,326
Ensembl chr 7:1,232,872...1,237,326 		JBrowse link
G WNT7A Wnt family member 7A involved_in IDA (PMID:17202865) AgBase PMID:17202865 NCBI chr 3:13,816,258...13,880,071
Ensembl chr 3:13,816,258...13,880,071 		JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BPIFA1 BPI fold containing family A member 1 involved_in IMP
IBA		 (PMID:23499554) UniProt
GO_Central		 PMID:23499554 GO_REF:0000033 NCBI chr20:33,235,996...33,243,306
Ensembl chr20:33,235,995...33,243,311 		JBrowse link
G LTF lactotransferrin involved_in IDA (PMID:12037568) UniProt PMID:12037568 NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    cellular process 18300
      cell aggregation 28
        aggregation of unicellular organisms + 2
        cartilage condensation + 24
paths to the root