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ONTOLOGY REPORT - ANNOTATIONS

Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.


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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MPZ myelin protein zero involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:136,691,245...136,720,958
Ensembl chr 1:140,626,039...140,631,273 		JBrowse link
G TMIGD1 transmembrane and immunoglobulin domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26342724) Ensembl
MGI		 PMID:26342724 GO_REF:0000107 NCBI chr17:26,434,052...26,451,937
Ensembl chr17:26,952,956...26,970,501 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr15:67,492,494...67,563,265
Ensembl chr15:86,733,853...86,771,420 		JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800003) Ensembl
MGI		 PMID:15800003 GO_REF:0000107 NCBI chr11:124,187,026...124,264,154
Ensembl chr11:128,086,409...128,162,833 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631181) Ensembl
MGI		 PMID:10631181 GO_REF:0000107 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 6:129,729,572...129,733,113
Ensembl chr 6:133,836,319...133,842,077 		JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr17:44,558,931...44,565,450
Ensembl chr17:49,432,883...49,437,337 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chr12:40,726,137...40,757,690 JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr11:64,866,649...64,871,031 JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:4,543,776...4,555,352
Ensembl chr12:4,466,975...4,478,459 		JBrowse link
G LOC100972297 nuclear pore complex-interacting protein family member B6 acts_upstream_of_or_within ISO (PMID:11593033) MGI PMID:11593033 NCBI chr16:604,927...1,697,831 JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,586,847...35,683,041
Ensembl chr 6:36,788,233...36,871,114 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr2A:15,925,130...15,931,605 JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10998416) Ensembl
MGI
TreeGrafter		 PMID:10998416 GO_REF:0000107 GO_REF:0000118 NCBI chr20:16,708,799...16,712,906
Ensembl chr20:16,689,253...16,692,470 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 9:62,782,183...63,005,626
Ensembl chr 9:90,851,983...90,965,084 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr12:62,361,631...62,780,805
Ensembl chr12:64,971,818...65,388,694 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr11:16,053,730...16,488,566
Ensembl chr11:15,747,495...16,175,246 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:12414734)
(PMID:10319868)		 MGI PMID:10319868 PMID:12414734 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9250685) Ensembl
MGI		 PMID:9250685 GO_REF:0000107 NCBI chr17:17,196,459...17,226,263 JBrowse link
G UNCX UNC homeobox acts_upstream_of_or_within ISO (PMID:10804168)
(PMID:10804169)		 MGI PMID:10804168 PMID:10804169 NCBI chr 7:1,479,804...1,485,041 JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BPIFA1 BPI fold containing family A member 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:29,524,619...29,532,996
Ensembl chr20:30,642,191...30,649,515 		JBrowse link
G LTF lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,337,738...46,367,476
Ensembl chr 3:47,442,440...47,471,532 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    cellular process 15499
      cell aggregation 26
        aggregation of unicellular organisms + 2
        cartilage condensation + 22
paths to the root