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ONTOLOGY REPORT - ANNOTATIONS

Term:complex of collagen trimers
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Accession:GO:0098644 term browser browse the term
Definition:A complex of collagen trimers such as a fibril or collagen network.
Synonyms:exact_synonym: Supramolecular aggregate of collagen;   Supramolecular collagen assembly


show annotations for term's descendants           Sort by:
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of
located_in		 ISO
IEA
IBA		 (PMID:14976317), (PMID:17576241), (PMID:19932771)
MGI:1857154 (PMID:7790374), (PMID:8018053)
GO_REF:0000118
GO_REF:0000033
(PMID:26848503), (PMID:28281531)		 RGD
TreeGrafter
GO_Central		 PMID:7790374 PMID:8018053 PMID:14976317 PMID:17576241 PMID:19932771 More... GO_REF:0000033 GO_REF:0000118 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of
located_in		 ISO
IBA
IEA		 (PMID:17955022), (PMID:18375391), (PMID:19932771)
(PMID:7825727)
GO_REF:0000033
GO_REF:0000107
(PMID:26848503)		 RGD
GO_Central
Ensembl		 PMID:7825727 PMID:17955022 PMID:18375391 PMID:19932771 PMID:26848503 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867 		JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain part_of ISO
IEA
IBA		 (PMID:8660302)
MGI:1857275 (PMID:7276808), (PMID:9880238)
GO_REF:0000118
GO_REF:0000033
GO_REF:0000107		 RGD
TreeGrafter
GO_Central
Ensembl		 PMID:7276808 PMID:8660302 PMID:9880238 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col3a1 collagen type III alpha 1 chain part_of
located_in		 ISO (PMID:17576241), (PMID:19932771), (PMID:7487954)
(PMID:7825727)
(PMID:18805790)		 RGD PMID:7487954 PMID:7825727 PMID:17576241 PMID:18805790 PMID:19932771 NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547 		JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr10:79,883,622...79,900,625
Ensembl chr10:79,883,622...79,900,624 		JBrowse link
G Col1a2 collagen type I alpha 2 chain part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 4:32,563,938...32,598,868
Ensembl chr 4:32,563,381...32,598,867 		JBrowse link
G Col4a1 collagen type IV alpha 1 chain part_of ISO (PMID:16107487)
(PMID:12101409)		 RGD PMID:12101409 PMID:16107487 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Col4a2 collagen type IV alpha 2 chain part_of IBA
ISO		 GO_REF:0000033
(PMID:12101409)		 GO_Central
RGD		 PMID:12101409 GO_REF:0000033 NCBI chr16:78,047,591...78,183,360
Ensembl chr16:78,047,602...78,183,839 		JBrowse link
G Col4a3 collagen type IV alpha 3 chain part_of ISO (PMID:10766752)
(PMID:12101409)		 RGD PMID:10766752 PMID:12101409 NCBI chr 9:83,875,849...84,004,955
Ensembl chr 9:83,875,561...84,001,895 		JBrowse link
G Col4a4 collagen type IV alpha 4 chain part_of ISO
IBA		 (PMID:7523402)
GO_REF:0000033
(MGI:69166|PMID:7962065)		 RGD
GO_Central		 PMID:7523402 PMID:7962065 GO_REF:0000033 MGI:69166 NCBI chr 9:83,833,173...83,875,436
Ensembl chr 9:83,755,515...83,875,876 		JBrowse link
G Col4a5 collagen type IV alpha 5 chain part_of ISO (PMID:12101409) RGD PMID:12101409 NCBI chr  X:105,118,762...105,322,699
Ensembl chr  X:105,118,820...105,322,692 		JBrowse link
G Col4a6 collagen type IV alpha 6 chain part_of IBA
ISO		 GO_REF:0000033
(PMID:10965041), (PMID:12101409)		 GO_Central
RGD		 PMID:10965041 PMID:12101409 GO_REF:0000033 NCBI chr  X:104,766,463...105,117,499
Ensembl chr  X:104,766,957...105,117,500 		JBrowse link
G Col7a1 collagen type VII alpha 1 chain part_of IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 8:109,604,877...109,637,249
Ensembl chr 8:109,604,861...109,637,252 		JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col28a1 collagen type XXVIII alpha 1 chain part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:36,069,980...36,223,128
Ensembl chr 4:36,069,970...36,223,220 		JBrowse link
G Col5a1 collagen type V alpha 1 chain part_of TAS
IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:9683580)		 GO_Central
Ensembl
RGD		 PMID:9683580 PMID:10852920 GO_REF:0000033 GO_REF:0000107, RGD:70693 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain part_of TAS
IBA
ISO		 GO_REF:0000033
(PMID:9425231), (PMID:9783710)		 GO_Central
RGD		 PMID:9425231 PMID:9783710 PMID:9822201 GO_REF:0000033, RGD:70694 NCBI chr 9:47,448,741...47,598,134
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Col5a3 collagen type V alpha 3 chain part_of TAS
ISO		 (PMID:15908193) RGD PMID:15908193 PMID:10852920 RGD:70693 NCBI chr 8:19,304,564...19,349,809
Ensembl chr 8:19,304,571...19,349,853 		JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col10a1 collagen type X alpha 1 chain located_in ISO (PMID:11839302) RGD PMID:11839302 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:38,182,494...38,189,494 		JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain part_of ISO
IBA		 (PMID:3182841)
GO_REF:0000033		 RGD
GO_Central		 PMID:3182841 GO_REF:0000033 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain part_of IEA
ISO		 GO_REF:0000107
(PMID:17331945)		 Ensembl
RGD		 PMID:17331945 GO_REF:0000107 NCBI chr 5:76,647,302...76,765,989
Ensembl chr 5:76,647,429...76,765,174 		JBrowse link
G Lum lumican part_of ISO
IEA		 (PMID:10734230)
GO_REF:0000107		 RGD
Ensembl		 PMID:10734230 GO_REF:0000107 NCBI chr 7:32,358,990...32,365,794
Ensembl chr 7:32,358,614...32,365,793 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      supramolecular complex 1429
        complex of collagen trimers 19
          banded collagen fibril + 11
          collagen anchoring fibril + 0
          collagen network + 10
Path 2
Term Annotations click to browse term
  cellular_component 21254
    cellular anatomical entity 21098
      cell periphery 7067
        external encapsulating structure 474
          extracellular matrix 472
            collagen-containing extracellular matrix 306
              complex of collagen trimers 19
                banded collagen fibril + 11
                collagen anchoring fibril + 0
                collagen network + 10
paths to the root