ONTOLOGY REPORT - ANNOTATIONS

Term:nephron tubule development
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Accession:GO:0072080 term browser browse the term
Definition:The progression of a nephron tubule over time, from its initial formation to the mature structure. A nephron tubule is an epithelial tube that is part of the nephron, the functional part of the kidney.

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nephron tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Wnt6 wingless-type MMTV integration site family, member 6 GBrowse link ISO 9 74,104,364 74,117,995 RGD:1624291 RGD
distal tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Jag1 jagged 1 GBrowse link IEA 3 125,181,063 125,216,481 RGD:1600115 ENSEMBL
G Notch1 notch 1 GBrowse link IEA 3 4,631,797 4,677,640 RGD:1600115 ENSEMBL
G Tfap2b transcription factor AP-2 beta GBrowse link ISO 9 18,052,402 18,082,202 RGD:1624291 RGD
G Tfap2b transcription factor AP-2 beta GBrowse link ISS 9 18,052,402 18,082,202 RGD:1600115 UniProtKB
distal tubule morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Klhl3 kelch-like family member 3 GBrowse link ISS 17 12,467,372 12,615,579 RGD:1600115 UniProtKB
G Klhl3 kelch-like family member 3 GBrowse link ISO 17 12,467,372 12,615,579 RGD:1624291 RGD
loop of Henle development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Dll1 delta-like 1 (Drosophila) GBrowse link IEA 1 54,240,395 54,248,183 RGD:1600115 ENSEMBL
G Jag1 jagged 1 GBrowse link IEA 3 125,181,063 125,216,481 RGD:1600115 ENSEMBL
mesonephric duct formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Hnf1b HNF1 homeobox B GBrowse link ISO 10 72,081,091 72,187,014 RGD:1624291 RGD
G Wnt9b wingless-type MMTV integration site family, member 9B GBrowse link ISO 10 92,880,020 92,901,641 RGD:1624291 RGD
G Wnt9b wingless-type MMTV integration site family, member 9B GBrowse link IEA 10 92,880,020 92,901,641 RGD:1600115 ENSEMBL
mesonephric duct morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Gpc3 glypican 3 GBrowse link ISO X 139,192,115 139,560,649 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISO 6 33,074,410 33,076,769 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISS 6 33,074,410 33,076,769 RGD:1600115 UniProtKB
mesonephric tubule formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link IEA 1 249,804,055 249,895,306 RGD:1600115 ENSEMBL
G Six1 SIX homeobox 1 GBrowse link ISO 6 95,470,153 95,475,389 RGD:1624291 RGD
G Six1 SIX homeobox 1 GBrowse link IEA 6 95,470,153 95,475,389 RGD:1600115 ENSEMBL
metanephric ascending thin limb development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pkd1 polycystic kidney disease 1 homolog (human) GBrowse link ISO 10 13,801,445 13,848,212 RGD:1624291 RGD
G Pkd2 polycystic kidney disease 2 (autosomal dominant) GBrowse link ISO 14 6,349,519 6,392,988 RGD:1624291 RGD
G Pkd2 polycystic kidney disease 2 (autosomal dominant) GBrowse link IEA 14 6,349,519 6,392,988 RGD:1600115 ENSEMBL
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISO 9 41,873,891 41,876,408 RGD:1624291 RGD
G Pou3f3 POU class 3 homeobox 3 GBrowse link IEA 9 41,873,891 41,876,408 RGD:1600115 ENSEMBL
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISS 9 41,873,891 41,876,408 RGD:1600115 UniProtKB
G Umod uromodulin GBrowse link IEA 1 177,729,212 177,742,552 RGD:1600115 ENSEMBL
metanephric connecting tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Calb1 calbindin 1 GBrowse link IEA 5 30,455,665 30,480,122 RGD:1600115 ENSEMBL
metanephric DCT cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISO 9 41,873,891 41,876,408 RGD:1624291 RGD
G Pou3f3 POU class 3 homeobox 3 GBrowse link IEA 9 41,873,891 41,876,408 RGD:1600115 ENSEMBL
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISS 9 41,873,891 41,876,408 RGD:1600115 UniProtKB
metanephric descending thin limb development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aqp1 aquaporin 1 GBrowse link IEA 4 84,098,346 84,110,524 RGD:1600115 ENSEMBL
metanephric distal convoluted tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Calb1 calbindin 1 GBrowse link IEA 5 30,455,665 30,480,122 RGD:1600115 ENSEMBL
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link ISS 1 249,804,055 249,895,306 RGD:1600115 UniProtKB
G Pax8 paired box 8 GBrowse link ISO 3 2,671,478 2,726,801 RGD:1624291 RGD
G Pax8 paired box 8 GBrowse link ISS 3 2,671,478 2,726,801 RGD:1600115 UniProtKB
G Umod uromodulin GBrowse link IEA 1 177,729,212 177,742,552 RGD:1600115 ENSEMBL
metanephric distal tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pkd2 polycystic kidney disease 2 (autosomal dominant) GBrowse link IEA 14 6,349,519 6,392,988 RGD:1600115 ENSEMBL
G Pkd2 polycystic kidney disease 2 (autosomal dominant) GBrowse link ISO 14 6,349,519 6,392,988 RGD:1624291 RGD
metanephric distal tubule morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pkd1 polycystic kidney disease 1 homolog (human) GBrowse link ISO 10 13,801,445 13,848,212 RGD:1624291 RGD
metanephric loop of Henle development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISO 9 41,873,891 41,876,408 RGD:1624291 RGD
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISS 9 41,873,891 41,876,408 RGD:1600115 UniProtKB
G Wnt7b wingless-type MMTV integration site family, member 7B GBrowse link ISO 7 123,533,713 123,554,333 RGD:1624291 RGD
G Wnt7b wingless-type MMTV integration site family, member 7B GBrowse link IEA 7 123,533,713 123,554,333 RGD:1600115 ENSEMBL
metanephric nephron tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISO 6 33,074,410 33,076,769 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISS 6 33,074,410 33,076,769 RGD:1600115 UniProtKB
metanephric nephron tubule formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link ISS 1 249,804,055 249,895,306 RGD:1600115 UniProtKB
G Pax8 paired box 8 GBrowse link ISO 3 2,671,478 2,726,801 RGD:1624291 RGD
G Pax8 paired box 8 GBrowse link ISS 3 2,671,478 2,726,801 RGD:1600115 UniProtKB
G Sox8 SRY (sex determining region Y)-box 8 GBrowse link ISO 10 14,818,955 14,823,943 RGD:1624291 RGD
G Sox8 SRY (sex determining region Y)-box 8 GBrowse link ISS 10 14,818,955 14,823,943 RGD:1600115 UniProtKB
G Sox9 SRY (sex determining region Y)-box 9 GBrowse link IGI 10 102,392,187 102,394,256 RGD:2290270 MGI
G Sox9 SRY (sex determining region Y)-box 9 GBrowse link ISS 10 102,392,187 102,394,256 RGD:1600115 UniProtKB
G Sox9 SRY (sex determining region Y)-box 9 GBrowse link ISO 10 102,392,187 102,394,256 RGD:1624291 RGD
metanephric nephron tubule morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Hes5 hairy and enhancer of split 5 (Drosophila) GBrowse link IEA 5 171,763,869 171,764,636 RGD:1600115 ENSEMBL
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 GBrowse link ISO 3 95,370,049 95,471,040 RGD:1624291 RGD
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 GBrowse link IEA 3 95,370,049 95,471,040 RGD:1600115 ENSEMBL
metanephric proximal convoluted tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Acat1 acetyl-CoA acetyltransferase 1 GBrowse link IEP 8 57,044,478 57,072,970 RGD:2326090 RGD
metanephric proximal convoluted tubule segment 2 development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aqp1 aquaporin 1 GBrowse link IEA 4 84,098,346 84,110,524 RGD:1600115 ENSEMBL
metanephric proximal straight tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aqp1 aquaporin 1 GBrowse link IEA 4 84,098,346 84,110,524 RGD:1600115 ENSEMBL
metanephric proximal tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pkd1 polycystic kidney disease 1 homolog (human) GBrowse link ISO 10 13,801,445 13,848,212 RGD:1624291 RGD
metanephric thick ascending limb development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISO 9 41,873,891 41,876,408 RGD:1624291 RGD
G Pou3f3 POU class 3 homeobox 3 GBrowse link IEA 9 41,873,891 41,876,408 RGD:1600115 ENSEMBL
G Pou3f3 POU class 3 homeobox 3 GBrowse link ISS 9 41,873,891 41,876,408 RGD:1600115 UniProtKB
G Umod uromodulin GBrowse link IEA 1 177,729,212 177,742,552 RGD:1600115 ENSEMBL
negative regulation of apoptotic process involved in metanephric nephron tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link ISS 1 249,804,055 249,895,306 RGD:1600115 UniProtKB
G Pax8 paired box 8 GBrowse link ISO 3 2,671,478 2,726,801 RGD:1624291 RGD
G Pax8 paired box 8 GBrowse link ISS 3 2,671,478 2,726,801 RGD:1600115 UniProtKB
negative regulation of metanephric nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ifng interferon gamma GBrowse link IDA 7 57,621,756 57,625,792 BHF-UCL
negative regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISO 6 33,074,410 33,076,769 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISS 6 33,074,410 33,076,769 RGD:1600115 UniProtKB
nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Mef2c myocyte enhancer factor 2C GBrowse link ISO 2 12,331,078 12,346,520 RGD:1624291 RGD
G Mef2c myocyte enhancer factor 2C GBrowse link ISS 2 12,331,078 12,346,520 RGD:1600115 UniProtKB
G Mef2c myocyte enhancer factor 2C GBrowse link IEA 2 12,331,078 12,346,520 RGD:1600115 ENSEMBL
G Mtss1 metastasis suppressor 1 GBrowse link ISO 7 95,808,266 95,947,927 RGD:1624291 RGD
G Mtss1 metastasis suppressor 1 GBrowse link ISS 7 95,808,266 95,947,927 RGD:1600115 UniProtKB
nephron tubule formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ctnnb1 catenin (cadherin associated protein), beta 1 GBrowse link ISO 8 125,978,161 125,987,670 RGD:1624291 RGD
G Ctnnb1 catenin (cadherin associated protein), beta 1 GBrowse link IBA 8 125,978,161 125,987,670 RGD:1600115 RefGenome
G Wnt6 wingless-type MMTV integration site family, member 6 GBrowse link ISO 9 74,104,364 74,117,995 RGD:1624291 RGD
G Wnt6 wingless-type MMTV integration site family, member 6 GBrowse link IEA 9 74,104,364 74,117,995 RGD:1600115 ENSEMBL
nephron tubule morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Wnt9b wingless-type MMTV integration site family, member 9B GBrowse link ISO 10 92,880,020 92,901,641 RGD:1624291 RGD
positive regulation of metanephric DCT cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link ISS 1 249,804,055 249,895,306 RGD:1600115 UniProtKB
G Pax8 paired box 8 GBrowse link ISO 3 2,671,478 2,726,801 RGD:1624291 RGD
G Pax8 paired box 8 GBrowse link ISS 3 2,671,478 2,726,801 RGD:1600115 UniProtKB
positive regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Cd24 CD24 molecule GBrowse link ISO 20 47,502,354 47,507,663 RGD:1624291 RGD
G Cd24 CD24 molecule GBrowse link ISS 20 47,502,354 47,507,663 RGD:1600115 UniProtKB
G Lhx1 LIM homeobox 1 GBrowse link ISO 10 72,800,497 72,805,799 RGD:1624291 RGD
G Lhx1 LIM homeobox 1 GBrowse link ISS 10 72,800,497 72,805,799 RGD:1600115 UniProtKB
G Prom1 prominin 1 GBrowse link ISO 14 72,122,986 72,230,453 RGD:1624291 RGD
pronephric nephron tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Hnf1b HNF1 homeobox B GBrowse link ISO 10 72,081,091 72,187,014 RGD:1624291 RGD
pronephric nephron tubule morphogenesis term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ahi1 Abelson helper integration site 1 GBrowse link ISO 1 16,332,801 16,454,055 RGD:1624291 RGD
G Ahi1 Abelson helper integration site 1 GBrowse link ISS 1 16,332,801 16,454,055 RGD:1600115 UniProtKB
proximal tubule development term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Aqp11 aquaporin 11 GBrowse link ISO 1 154,973,796 154,983,962 RGD:1624291 RGD
G Dll1 delta-like 1 (Drosophila) GBrowse link IEA 1 54,240,395 54,248,183 RGD:1600115 ENSEMBL
regulation of metanephric nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Lif leukemia inhibitory factor GBrowse link ISO 14 84,887,856 84,890,630 RGD:1624291 RGD
G Lif leukemia inhibitory factor GBrowse link IEA 14 84,887,856 84,890,630 RGD:1600115 ENSEMBL
G Pax2 paired box 2 GBrowse link ISO 1 249,804,055 249,895,306 RGD:1624291 RGD
G Pax2 paired box 2 GBrowse link ISS 1 249,804,055 249,895,306 RGD:1600115 UniProtKB
G Pax8 paired box 8 GBrowse link ISO 3 2,671,478 2,726,801 RGD:1624291 RGD
G Pax8 paired box 8 GBrowse link ISS 3 2,671,478 2,726,801 RGD:1600115 UniProtKB
regulation of nephron tubule epithelial cell differentiation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Ctnnb1 catenin (cadherin associated protein), beta 1 GBrowse link ISO 8 125,978,161 125,987,670 RGD:1624291 RGD
G Ctnnb1 catenin (cadherin associated protein), beta 1 GBrowse link IEA 8 125,978,161 125,987,670 RGD:1600115 ENSEMBL
G Gata3 GATA binding protein 3 GBrowse link ISO 17 79,991,587 80,011,574 RGD:1624291 RGD
G Gata3 GATA binding protein 3 GBrowse link ISS 17 79,991,587 80,011,574 RGD:1600115 UniProtKB
specification of anterior mesonephric tubule identity term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISO 6 33,074,410 33,076,769 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISS 6 33,074,410 33,076,769 RGD:1600115 UniProtKB
specification of loop of Henle identity term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Hes5 hairy and enhancer of split 5 (Drosophila) GBrowse link IEA 5 171,763,869 171,764,636 RGD:1600115 ENSEMBL
G Irx1 iroquois homeobox 1 GBrowse link IEA 17 1,390,894 1,396,724 RGD:1600115 ENSEMBL
G Irx2 iroquois homeobox 2 GBrowse link IEA 17 743,534 748,950 RGD:1600115 ENSEMBL
specification of posterior mesonephric tubule identity term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISO 6 33,074,410 33,076,769 RGD:1624291 RGD
G Osr1 odd-skipped related 1 (Drosophila) GBrowse link ISS 6 33,074,410 33,076,769 RGD:1600115 UniProtKB
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 135967
    developmental process 29431
      anatomical structure development 26183
        nephron development 337
          nephron epithelium development 163
            nephron tubule development 114
              connecting tubule development + 1
              distal tubule development + 26
              loop of Henle development + 17
              mesonephric nephron tubule development + 0
              metanephric nephron tubule development + 62
              nephron tubule epithelial cell differentiation + 23
              nephron tubule morphogenesis + 39
              pronephric nephron tubule development + 3
              proximal tubule development + 6
Path 2
Term Annotations click to browse term
  biological_process 135967
    multicellular organismal process 37265
      single-multicellular organism process 36068
        multicellular organismal development 24588
          system development 21128
            urogenital system development 1437
              renal system development 1208
                kidney development 933
                  kidney epithelium development 222
                    nephron epithelium development 163
                      nephron tubule development 114
                        connecting tubule development + 1
                        distal tubule development + 26
                        loop of Henle development + 17
                        mesonephric nephron tubule development + 0
                        metanephric nephron tubule development + 62
                        nephron tubule epithelial cell differentiation + 23
                        nephron tubule morphogenesis + 39
                        pronephric nephron tubule development + 3
                        proximal tubule development + 6
paths to the root

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