ONTOLOGY REPORT - ANNOTATIONS

Term:trabecula formation
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Accession:GO:0060343 term browser browse the term
Definition:The process of creating a trabecula in an organ. A trabecula is a small, often microscopic, tissue element in the form of a small beam, strut or rod, which generally has a mechanical function. Trabecula are usually but not necessarily, composed of dense collagenous tissue.
Synonyms:exact_synonym: trabeculation
 related_synonym: trabecula biogenesis

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bone trabecula formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Col1a1 collagen, type I, alpha 1 GBrowse link ISO 10 83,622,438 83,639,368 RGD:1624291 RGD
G Col1a1 collagen, type I, alpha 1 GBrowse link IEA 10 83,622,438 83,639,368 RGD:1600115 ENSEMBL
G Fbn2 fibrillin 2 GBrowse link ISO 18 53,883,011 53,914,001 RGD:1624291 RGD
G Fbn2 fibrillin 2 GBrowse link IEA 18 53,883,011 53,914,001 RGD:1600115 ENSEMBL
G Mmp2 matrix metallopeptidase 2 GBrowse link ISO 19 15,246,036 15,275,061 RGD:1624291 RGD
G Msx2 msh homeobox 2 GBrowse link ISO 17 17,243,262 17,248,927 RGD:1624291 RGD
G Msx2 msh homeobox 2 GBrowse link IEA 17 17,243,262 17,248,927 RGD:1600115 ENSEMBL
G Ppargc1b peroxisome proliferator-activated receptor gamma, coactivator 1 beta GBrowse link ISO 18 57,277,749 57,301,024 RGD:1624291 RGD
G Ppargc1b peroxisome proliferator-activated receptor gamma, coactivator 1 beta GBrowse link IEA 18 57,277,749 57,301,024 RGD:1600115 ENSEMBL
G Sfrp1 secreted frizzled-related protein 1 GBrowse link ISO 16 73,030,458 73,067,304 RGD:1624291 RGD
G Sfrp1 secreted frizzled-related protein 1 GBrowse link IEA 16 73,030,458 73,067,304 RGD:1600115 ENSEMBL
G Wnt10b wingless-type MMTV integration site family, member 10B GBrowse link ISO 7 137,541,197 137,547,000 RGD:1624291 RGD
heart trabecula formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 GBrowse link ISO 11 25,434,262 25,443,144 RGD:1624291 RGD
G Adamts1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 GBrowse link IEA 11 25,434,262 25,443,144 RGD:1600115 ENSEMBL
G Bmp10 bone morphogenetic protein 10 GBrowse link ISO 4 121,596,150 121,601,778 RGD:1624291 RGD
G Bmp10 bone morphogenetic protein 10 GBrowse link IEA 4 121,596,150 121,601,778 RGD:1600115 ENSEMBL
G Cav3 caveolin 3 GBrowse link ISO 4 148,294,428 148,310,380 RGD:1624291 RGD
G Cav3 caveolin 3 GBrowse link IEA 4 148,294,428 148,310,380 RGD:1600115 ENSEMBL
G Egln1 EGL nine homolog 1 (C. elegans) GBrowse link ISO 19 55,080,670 55,118,226 RGD:1624291 RGD
G Egln1 EGL nine homolog 1 (C. elegans) GBrowse link IEA 19 55,080,670 55,118,226 RGD:1600115 ENSEMBL
G Fhl2 four and a half LIM domains 2 GBrowse link IEA 9 42,319,997 42,349,055 RGD:1600115 ENSEMBL
G Fkbp1a FK506 binding protein 1a GBrowse link ISO 3 141,861,237 141,880,797 RGD:1624291 RGD
G Fkbp1a FK506 binding protein 1a GBrowse link IEA 3 141,861,237 141,880,797 RGD:1600115 ENSEMBL
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 GBrowse link IEA 1 27,505,117 27,515,204 RGD:1600115 ENSEMBL
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 GBrowse link ISO 1 27,505,117 27,515,204 RGD:1624291 RGD
G Nkx2-5 NK2 homeobox 5 GBrowse link ISO 10 16,606,183 16,608,952 RGD:1624291 RGD
G Nkx2-5 NK2 homeobox 5 GBrowse link IEA 10 16,606,183 16,608,952 RGD:1600115 ENSEMBL
G Ovol2 ovo-like 2 (Drosophila) GBrowse link ISO 3 132,842,267 132,871,206 RGD:1624291 RGD
G Ovol2 ovo-like 2 (Drosophila) GBrowse link IEA 3 132,842,267 132,871,206 RGD:1600115 ENSEMBL
G Rbp4 retinol binding protein 4, plasma GBrowse link ISO 1 242,443,795 242,450,997 RGD:1624291 RGD
G Rbp4 retinol binding protein 4, plasma GBrowse link IEA 1 242,443,795 242,450,997 RGD:1600115 ENSEMBL
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 GBrowse link ISO 8 20,720,915 20,812,157 RGD:1624291 RGD
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 GBrowse link IEA 8 20,720,915 20,812,157 RGD:1600115 ENSEMBL
G Srf serum response factor (c-fos serum response element-binding transcription factor) GBrowse link ISO 9 9,788,378 9,797,639 RGD:1624291 RGD
G Tek TEK tyrosine kinase, endothelial GBrowse link ISO 5 115,047,195 115,196,172 RGD:1624291 RGD
G Tgfbr3 transforming growth factor, beta receptor III GBrowse link ISO 14 3,051,039 3,240,286 RGD:1624291 RGD
G Tgfbr3 transforming growth factor, beta receptor III GBrowse link IEA 14 3,051,039 3,240,286 RGD:1600115 ENSEMBL
negative regulation of bone trabecula formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Grem1 gremlin 1 GBrowse link ISO 3 99,597,201 99,608,935 RGD:1624291 RGD
G Grem1 gremlin 1 GBrowse link IEA 3 99,597,201 99,608,935 RGD:1600115 ENSEMBL
spleen trabecula formation term browser
Symbol Object Name GBrowse Evidence Chr Start Stop Reference Source
G Slc40a1 solute carrier family 40 (iron-regulated transporter), member 1 GBrowse link ISO 9 44,977,430 44,995,358 RGD:1624291 RGD
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 135967
    single-organism process 88399
      single-organism developmental process 22738
        trabecula formation 40
          bone trabecula formation + 14
          heart trabecula formation 25
          liver trabecula formation 0
          spleen trabecula formation 1
Path 2
Term Annotations click to browse term
  biological_process 135967
    single-organism process 88399
      single-multicellular organism process 36068
        multicellular organismal development 24588
          system development 21128
            organ development 14127
              organ morphogenesis 3374
                trabecula formation 40
                  bone trabecula formation + 14
                  heart trabecula formation 25
                  liver trabecula formation 0
                  spleen trabecula formation 1
paths to the root

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