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ONTOLOGY REPORT - ANNOTATIONS

Term:extracellular matrix binding
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Accession:GO:0050840 term browser browse the term
Definition:Binding to a component of the extracellular matrix.
Synonyms:exact_synonym: extracellular matrix constituent binding
 related_synonym: adhesive extracellular matrix constituent


show annotations for term's descendants           Sort by:
extracellular matrix binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts15 ADAM metallopeptidase with thrombospondin type 1 motif, 15 enables ISO (PMID:24220035) RGD PMID:24220035 NCBI chr 8:29,307,864...29,331,249
Ensembl chr 8:29,307,865...29,331,249 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif, 5 enables ISO (PMID:24220035) RGD PMID:24220035 NCBI chr11:25,000,627...25,047,205
Ensembl chr11:25,000,637...25,047,205 		JBrowse link
G Adgrg1 adhesion G protein-coupled receptor G1 enables IEA
ISO
ISS		 GO_REF:0000107
(MGI:3796260|PMID:18509043)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:18509043 GO_REF:0000024 GO_REF:0000107 MGI:3796260 NCBI chr19:10,003,963...10,041,122
Ensembl chr19:10,003,975...10,041,108 		JBrowse link
G Bgn biglycan enables IEA
ISO		 GO_REF:0000107
(PMID:18757743)		 Ensembl
RGD		 PMID:18757743 GO_REF:0000107 NCBI chr  X:151,197,296...151,209,458
Ensembl chr  X:151,197,273...151,209,461 		JBrowse link
G Ccn1 cellular communication network factor 1 enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484 		JBrowse link
G Cd248 CD248 molecule enables IBA
ISO		 GO_REF:0000033
(PMID:22740442)		 GO_Central
RGD		 PMID:22740442 GO_REF:0000033 NCBI chr 1:202,373,676...202,376,240
Ensembl chr 1:202,373,676...202,376,240 		JBrowse link
G Cd93 CD93 molecule enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr 3:135,891,859...135,898,378
Ensembl chr 3:135,891,859...135,898,378 		JBrowse link
G Clec14a C-type lectin domain containing 14A enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:75,881,470...75,884,612
Ensembl chr 6:75,881,473...75,884,612 		JBrowse link
G Dcn decorin enables IEA
ISO		 GO_REF:0000107
(PMID:18757743)		 Ensembl
RGD		 PMID:18757743 GO_REF:0000107 NCBI chr 7:32,281,252...32,321,291
Ensembl chr 7:32,281,252...32,321,270 		JBrowse link
G Dmp1 dentin matrix acidic phosphoprotein 1 enables IEA
ISO
IBA		 GO_REF:0000107
(PMID:18757743)
GO_REF:0000118
GO_REF:0000033		 Ensembl
RGD
TreeGrafter
GO_Central		 PMID:18757743 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr14:5,528,441...5,542,078
Ensembl chr14:5,528,431...5,539,323 		JBrowse link
G Eln elastin enables IEA
ISO		 GO_REF:0000107
(PMID:18757743)		 Ensembl
RGD		 PMID:18757743 GO_REF:0000107 NCBI chr12:21,968,544...22,011,929
Ensembl chr12:21,968,544...22,011,928 		JBrowse link
G Fbln2 fibulin 2 enables IBA
ISO		 GO_REF:0000033
(PMID:18757743)		 GO_Central
RGD		 PMID:18757743 GO_REF:0000033 NCBI chr 4:123,704,289...123,763,857
Ensembl chr 4:123,704,373...123,763,948 		JBrowse link
G Itga2b integrin subunit alpha 2b enables ISO (PMID:15031111) RGD PMID:15031111 NCBI chr10:87,408,532...87,426,055
Ensembl chr10:87,408,536...87,426,168 		JBrowse link
G Itgav integrin subunit alpha V enables ISO (PMID:22505472) RGD PMID:22505472 NCBI chr 3:68,838,514...68,926,653
Ensembl chr 3:68,838,189...68,926,639 		JBrowse link
G Itgb3 integrin subunit beta 3 enables ISO
IEA		 (PMID:22505472)
GO_REF:0000107		 RGD
Ensembl		 PMID:22505472 GO_REF:0000107 NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679 		JBrowse link
G Nid1 nidogen 1 enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr17:86,085,133...86,158,272
Ensembl chr17:86,085,077...86,158,267 		JBrowse link
G Olfml2a olfactomedin-like 2A enables ISO (PMID:15836428) RGD PMID:15836428 NCBI chr 3:22,688,590...22,717,917
Ensembl chr 3:22,688,598...22,717,909 		JBrowse link
G Olfml2b olfactomedin-like 2B enables ISO (PMID:15836428) RGD PMID:15836428 NCBI chr13:82,869,414...82,906,607
Ensembl chr13:82,869,433...82,906,607 		JBrowse link
G Sdc1 syndecan 1 TAS RGD PMID:12135485 RGD:625750 NCBI chr 6:31,562,799...31,585,267
Ensembl chr 6:31,562,739...31,585,264 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 enables IBA
ISO		 GO_REF:0000033
(PMID:18757743)		 GO_Central
RGD		 PMID:18757743 GO_REF:0000033 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699 		JBrowse link
G Smoc2 SPARC related modular calcium binding 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:55,262,472...55,391,804
Ensembl chr 1:55,262,530...55,391,693 		JBrowse link
G Sparc secreted protein acidic and cysteine rich enables IEA
ISO
IBA		 GO_REF:0000118
(PMID:18757743)
GO_REF:0000033		 TreeGrafter
RGD
GO_Central		 PMID:18757743 GO_REF:0000033 GO_REF:0000118 NCBI chr10:39,516,394...39,538,252
Ensembl chr10:39,516,406...39,538,396 		JBrowse link
G Sparcl1 SPARC like 1 enables IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:5,632,816...5,663,866
Ensembl chr14:5,632,569...5,663,865 		JBrowse link
G Spock1 sparc/osteonectin, cwcv and kazal like domains proteoglycan 1 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr17:6,741,504...7,221,685
Ensembl chr17:6,742,273...7,224,935 		JBrowse link
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr20:28,037,334...28,064,272
Ensembl chr20:28,033,475...28,064,272 		JBrowse link
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 enables IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr16:26,382,895...26,815,943
Ensembl chr16:26,383,383...26,815,205 		JBrowse link
G Spp1 secreted phosphoprotein 1 enables IBA
ISO
IEA		 GO_REF:0000033
(PMID:18757743)
GO_REF:0000118		 GO_Central
RGD
TreeGrafter		 PMID:18757743 GO_REF:0000033 GO_REF:0000118 NCBI chr14:5,308,885...5,315,120
Ensembl chr14:5,308,885...5,315,162 		JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains enables ISO
IBA		 (MGI:4939978|PMID:21217009)
GO_REF:0000033		 RGD
GO_Central		 PMID:21217009 GO_REF:0000033 MGI:4939978 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743 		JBrowse link
G Tgfbi transforming growth factor, beta induced enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr17:7,955,603...7,984,903
Ensembl chr17:7,955,603...7,985,240 		JBrowse link
G Thbs1 thrombospondin 1 enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Thsd1 thrombospondin type 1 domain containing 1 enables ISO (PMID:27895300) RGD PMID:27895300 NCBI chr16:69,771,408...69,804,844
Ensembl chr16:69,771,408...69,801,504 		JBrowse link
G Vtn vitronectin enables IBA
ISO		 GO_REF:0000033
(PMID:18757743)		 GO_Central
RGD		 PMID:18757743 GO_REF:0000033 NCBI chr10:63,394,732...63,397,812
Ensembl chr10:63,394,719...63,397,810 		JBrowse link
G Zan zonadhesin enables ISO (PMID:7592795) RGD PMID:7592795 NCBI chr12:19,215,018...19,322,789
Ensembl chr12:19,215,102...19,271,240 		JBrowse link
bone sialoprotein binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anxa2 annexin A2 IPI RGD PMID:23525114 RGD:12911212 NCBI chr 8:70,105,268...70,141,663
Ensembl chr 8:70,105,253...70,141,658 		JBrowse link
collagen fibril binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambp alpha-1-microglobulin/bikunin precursor enables ISO
ISS		 (PMID:22096585)
GO_REF:0000024		 RGD
UniProt		 PMID:22096585 GO_REF:0000024 NCBI chr 5:76,568,094...76,578,416
Ensembl chr 5:76,568,094...76,578,331 		JBrowse link
G Chadl chondroadherin-like enables ISO (PMID:25451920) RGD PMID:25451920 NCBI chr 7:113,205,323...113,218,678
Ensembl chr 7:113,210,748...113,217,272 		JBrowse link
G Tnxb tenascin XB enables ISO (PMID:16278880) RGD PMID:16278880
laminin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase enables ISO
IEA		 (PMID:12524166)
PR:P02469 (PMID:15474030)
GO_REF:0000107		 RGD
Ensembl		 PMID:12524166 PMID:15474030 GO_REF:0000107 NCBI chr12:19,406,133...19,413,713
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Adam9 ADAM metallopeptidase domain 9 enables ISO (PMID:15361064) RGD PMID:15361064 NCBI chr16:67,022,538...67,101,647
Ensembl chr16:67,022,655...67,100,917 		JBrowse link
G Adgrg6 adhesion G protein-coupled receptor G6 enables ISO
IBA		 (MGI:5629884|PMID:25695270)
GO_REF:0000033		 RGD
GO_Central		 PMID:25695270 GO_REF:0000033 MGI:5629884 NCBI chr 1:8,812,889...8,954,239
Ensembl chr 1:8,812,904...8,954,123 		JBrowse link
G Agrn agrin enables IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:166,749,306...166,782,212
Ensembl chr 5:166,749,310...166,786,003 		JBrowse link
G Bcam basal cell adhesion molecule (Lutheran blood group) enables ISO
IEA		 (PMID:16236823)
GO_REF:0000107		 RGD
Ensembl		 PMID:16236823 GO_REF:0000107 NCBI chr 1:79,415,016...79,429,403
Ensembl chr 1:79,415,017...79,429,403 		JBrowse link
G C20h6orf15 similar to human chromosome 6 open reading frame 15 enables ISO (PMID:18757743) RGD PMID:18757743 NCBI chr20:3,172,330...3,173,886
Ensembl chr20:3,172,330...3,173,886 		JBrowse link
G Ctss cathepsin S enables ISO
IEA		 (PMID:22952693)
GO_REF:0000107		 RGD
Ensembl		 PMID:22952693 GO_REF:0000107 NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G Dag1 dystroglycan 1 enables IDA
ISO
IBA		 (PMID:19155270)
GO_REF:0000033		 RGD
GO_Central		 PMID:19155270 PMID:8996823 GO_REF:0000033, RGD:11541070 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325 		JBrowse link
G Fkrp fukutin related protein enables ISO (PMID:21224063) RGD PMID:21224063 NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Gpc1 glypican 1 enables ISS
ISO
IEA		 GO_REF:0000024
(MGI:4461098|PMID:20100867)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20100867 GO_REF:0000024 GO_REF:0000107 MGI:4461098 NCBI chr 9:93,396,234...93,424,047
Ensembl chr 9:93,396,234...93,424,047 		JBrowse link
G Itga2 integrin subunit alpha 2 IMP binding by rat pheochromocytoma cells RGD PMID:10082128 RGD:2307408 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481 		JBrowse link
G Itga3 integrin subunit alpha 3 IMP
IDA		 RGD PMID:2223092 PMID:1835909 RGD:2325828, RGD:2325829 NCBI chr10:79,990,160...80,022,206
Ensembl chr10:79,990,161...80,022,118 		JBrowse link
G Itga6 integrin subunit alpha 6 IPI RGD PMID:16608848 RGD:1600017 NCBI chr 3:56,604,512...56,689,428
Ensembl chr 3:56,617,268...56,689,428 		JBrowse link
G Itga7 integrin subunit alpha 7 contributes_to IDA
ISO		 (PMID:1839357), (PMID:9004048) RGD PMID:1839357 PMID:9004048 PMID:1315319 PMID:16282198 RGD:70774, RGD:1600026 NCBI chr 7:1,360,125...1,388,886
Ensembl chr 7:1,359,940...1,388,450 		JBrowse link
G Itga9 integrin subunit alpha 9 IDA RGD PMID:8020590 RGD:2317878 NCBI chr 8:118,307,424...118,615,527
Ensembl chr 8:118,307,381...118,613,754 		JBrowse link
G Itgb1 integrin subunit beta 1 contributes_to
enables		 IMP
ISO
IEA
IDA		 (PMID:1839357)
GO_REF:0000118
GO_REF:0000107		 RGD
TreeGrafter
Ensembl		 PMID:1839357 PMID:18635166 PMID:1835909 GO_REF:0000107 GO_REF:0000118, RGD:2325290, RGD:2325829 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195 		JBrowse link
G Lgals1 galectin 1 enables IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter
RGD		 PMID:1955484 GO_REF:0000033 GO_REF:0000118, RGD:2316546 NCBI chr 7:110,485,239...110,488,345
Ensembl chr 7:110,481,392...110,488,345 		JBrowse link
G Lgals3 galectin 3 enables ISO
IBA
IEA		 (PMID:2402511)
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107		 RGD
GO_Central
TreeGrafter
Ensembl		 PMID:2402511 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:20,620,083...20,632,019
Ensembl chr15:20,607,692...20,632,025 		JBrowse link
G Lrrc15 leucine rich repeat containing 15 enables ISO
IEA		 (PMID:16098915)
GO_REF:0000107		 RGD
Ensembl		 PMID:16098915 GO_REF:0000107 NCBI chr11:70,469,817...70,484,268
Ensembl chr11:70,469,804...70,484,267 		JBrowse link
G Lypd3 Ly6/Plaur domain containing 3 enables IDA PMID:15729693 MGI PMID:15729693 RGD:8553808 NCBI chr 1:80,226,449...80,230,901
Ensembl chr 1:80,226,449...80,230,901 		JBrowse link
G Ncl nucleolin IDA RGD PMID:8583499 RGD:9686427 NCBI chr 9:86,999,588...87,008,112
Ensembl chr 9:86,998,019...87,008,136 		JBrowse link
G Nid1 nidogen 1 enables ISO (PMID:22952693) RGD PMID:22952693 NCBI chr17:86,085,133...86,158,272
Ensembl chr17:86,085,077...86,158,267 		JBrowse link
G Plekha2 pleckstrin homology domain containing A2 enables ISO (PMID:19786618) RGD PMID:19786618 NCBI chr16:66,938,684...67,000,661
Ensembl chr16:66,939,109...66,999,395 		JBrowse link
G Rpsa ribosomal protein SA enables ISO (PMID:8452943) RGD PMID:8452943 NCBI chr 8:119,851,225...119,855,103
Ensembl chr 8:119,851,225...119,855,247 		JBrowse link
G Ssc5d scavenger receptor cysteine rich family member with 5 domains enables ISO (MGI:4939978|PMID:21217009) RGD PMID:21217009 MGI:4939978 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743 		JBrowse link
G Thbs1 thrombospondin 1 enables ISO (PMID:6693501) RGD PMID:6693501 NCBI chr 3:105,056,293...105,071,445
Ensembl chr 3:105,056,292...105,071,440 		JBrowse link
G Tinagl1 tubulointerstitial nephritis antigen-like 1 enables ISO PR:P19137 (PMID:19587330) RGD PMID:19587330 NCBI chr 5:142,513,710...142,523,730
Ensembl chr 5:142,513,714...142,523,720 		JBrowse link
laminin-1 binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dag1 dystroglycan 1 IDA RGD PMID:9153251 RGD:11541058 NCBI chr 8:108,890,926...108,955,611
Ensembl chr 8:108,890,929...108,952,325 		JBrowse link
G Nid1 nidogen 1 enables IEA
ISO		 GO_REF:0000107
(PMID:17517882)		 Ensembl
RGD		 PMID:17517882 GO_REF:0000107 NCBI chr17:86,085,133...86,158,272
Ensembl chr17:86,085,077...86,158,267 		JBrowse link
G Ntn4 netrin 4 enables ISO (PMID:17588941) RGD PMID:17588941 NCBI chr 7:28,186,611...28,300,390
Ensembl chr 7:28,186,611...28,300,390 		JBrowse link
G Pxdn peroxidasin enables ISO (PMID:32485152) RGD PMID:32485152 NCBI chr 6:46,580,749...46,658,345
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Shh sonic hedgehog signaling molecule enables IEA
ISO
ISS		 GO_REF:0000107
(PMID:15056720)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:15056720 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Slit2 slit guidance ligand 2 enables ISO
IEA		 (PMID:10102268)
GO_REF:0000107		 RGD
Ensembl		 PMID:10102268 GO_REF:0000107 NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948 		JBrowse link
G Thbs4 thrombospondin 4 IDA RGD PMID:10956668 RGD:1580072 NCBI chr 2:23,983,158...24,025,289
Ensembl chr 2:23,983,158...24,026,313 		JBrowse link
microfibril binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl2 ADAMTS-like 2 enables ISO PR:Q61554|PR:Q61555 (PMID:25762570) RGD PMID:25762570 NCBI chr 3:10,397,774...10,434,557
Ensembl chr 3:10,404,626...10,434,554 		JBrowse link
G Adamtsl5 ADAMTS-like 5 enables ISO (PMID:23010571) RGD PMID:23010571 NCBI chr 7:9,362,623...9,371,248
Ensembl chr 7:9,363,237...9,370,285 		JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 enables ISO
IBA
IEA		 (PMID:12429738)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:12429738 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:20,029,629...20,425,339
Ensembl chr 6:20,029,629...20,425,349 		JBrowse link
G Ltbp2 latent transforming growth factor beta binding protein 2 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:104,429,947...104,530,498
Ensembl chr 6:104,429,947...104,526,208 		JBrowse link
G Polr2a RNA polymerase II subunit A enables ISO (PMID:28945358) RGD PMID:28945358 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455 		JBrowse link
G Vwa1 von Willebrand factor A domain containing 1 enables ISO (PMID:23300779) RGD PMID:23300779 NCBI chr 5:166,377,451...166,382,784
Ensembl chr 5:166,377,455...166,382,637 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21010
    binding 18037
      extracellular matrix binding 72
        bone sialoprotein binding 1
        collagen fibril binding 3
        host cell extracellular matrix binding 0
        laminin binding + 32
        microfibril binding 6
paths to the root